63e653adaa
From [1] * What is new in gsl-2.7: * fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com) * fixed bug #60335 (spmatrix test failure, J. Lamb) * fixed bug #36577 * clarified documentation on interpolation accelerators (V. Krishnan) * fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte) * fixed doc bug #59758 * fixed bug #58202 (rstat median for n=5) * added support for native C complex number types in gsl_complex when using a C11 compiler * upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6 * updated exponential fitting example for nonlinear least squares * added banded LU decomposition and solver (gsl_linalg_LU_band) * New functions added to the library: - gsl_matrix_norm1 - gsl_spmatrix_norm1 - gsl_matrix_complex_conjtrans_memcpy - gsl_linalg_QL: decomp, unpack - gsl_linalg_complex_QR_* (thanks to Christian Krueger) - gsl_vector_sum - gsl_matrix_scale_rows - gsl_matrix_scale_columns - gsl_multilarge_linear_matrix_ptr - gsl_multilarge_linear_rhs_ptr - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense) - gsl_spmatrix_dense_sub - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply - gsl_linalg_QR_UD: decomp, lssolve - gsl_linalg_QR_UU: decomp, lssolve, QTvec - gsl_linalg_QR_UZ: decomp - gsl_multifit_linear_lcurvature - gsl_spline2d_eval_extrap * bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me) * made gsl_sf_legendre_array_index() inline and documented - gsl_sf_legendre_nlm() [1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS PR: 256423 Exp-run by: antoine
40 lines
1.2 KiB
Makefile
40 lines
1.2 KiB
Makefile
PORTNAME= viennarna
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DISTVERSION= 2.4.18
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
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DISTNAME= ViennaRNA-${DISTVERSION}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Alignment tools for the structural analysis of RNA
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LICENSE= ViennaRNALicense
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LICENSE_NAME= Vienna RNA License
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LICENSE_FILE= ${WRKSRC}/COPYING
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LICENSE_PERMS= auto-accept dist-mirror pkg-mirror
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BUILD_DEPENDS= bash:shells/bash \
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libgd>0:graphics/gd # for the static lib
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LIB_DEPENDS= libgmp.so:math/gmp \
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libgsl.so:math/gsl \
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libmpfr.so:math/mpfr
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USES= autoreconf compiler:c++11-lang gmake libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure
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USE_XORG= x11 xext # only for build
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GNU_CONFIGURE= yes
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CONFIGURE_SHELL= ${PREFIX}/bin/bash
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CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl
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INFO= RNAlib
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DATASDIR= ${PREFIX}/share/ViennaRNA
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DOCSDIR= ${PREFIX}/share/doc/ViennaRNA
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EXAMPLESDIR= ${PREFIX}/share/examples/ViennaRNA
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OPTIONS_DEFINE= DOCS EXAMPLES
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PORTDOCS= *
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PORTEXAMPLES= *
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.include <bsd.port.mk>
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