ebb1ae8d2b
# gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build' # gmake[1]: *** [Makefile:24: all] Error 2 Approved by: portmgr (tier-2 blanket)
69 lines
2.1 KiB
Makefile
69 lines
2.1 KiB
Makefile
# $FreeBSD$
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PORTNAME= ncbi-blast+
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DISTVERSION= 2.7.1
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CATEGORIES= biology perl5 python
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MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
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https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
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DISTNAME= ncbi-blast-${PORTVERSION}+-src
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= NCBI implementation of Basic Local Alignment Search Tool
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LICENSE= PD
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LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE
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BROKEN_powerpc64= fails to build: Error 2
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LIB_DEPENDS= libpcre.so:devel/pcre \
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liblmdb.so:databases/lmdb \
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liblzo2.so:archivers/lzo2 \
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libgnutls.so:security/gnutls \
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libtspi.so:security/trousers \
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libgmp.so:math/gmp \
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libidn2.so:dns/libidn2 \
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libnettle.so:security/nettle \
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libhogweed.so:security/nettle \
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libtasn1.so:security/libtasn1 \
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libp11-kit.so:security/p11-kit \
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libgcrypt.so:security/libgcrypt \
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libgpg-error.so:security/libgpg-error \
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libsqlite3.so:databases/sqlite3
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RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils
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USES= compiler:openmp gmake shebangfix perl5 python
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SHEBANG_FILES= src/app/blast/legacy_blast.pl \
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src/app/blast/update_blastdb.pl \
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src/app/winmasker/windowmasker_2.2.22_adapter.py
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USE_LDCONFIG= yes
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GNU_CONFIGURE= yes
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# The test for amq can hang, but amq is not needed so just avoid the test
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CONFIGURE_ENV= ncbi_cv_prog_amq_w=no
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# configure chooses /usr/local/bin/ar with no flags
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# FreeBSD boost port flagged by configure as untested version
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# --libdir=${PREFIX}/lib/ncbi-tools++ doesn't respect DESTDIR, so do
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# a postinstall mv.
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CONFIGURE_ARGS+= AR="ar cr" --without-boost --libdir=${PREFIX}/lib/ncbi-tools++
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WRKSRC_SUBDIR= c++
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MAKE_JOBS_UNSAFE= yes
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# Fix "undefined _ThreadRuneLocale" error on 10.0
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# Fix unknown options in configure
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post-patch:
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@${REINPLACE_CMD} \
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-e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' \
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-e '/--infodir=DIR/d' \
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-e '/--mandir=DIR/d' \
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${WRKSRC}/src/build-system/configure
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post-install:
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@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
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@${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11
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@${RMDIR} ${STAGEDIR}${PREFIX}/lib/debug
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${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/ncbi-tools++/*.so
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.include <bsd.port.mk>
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