Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.
24 lines
375 B
Makefile
24 lines
375 B
Makefile
# $FreeBSD$
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PORTNAME= bioawk
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DISTVERSIONPREFIX= v
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DISTVERSION= 1.0-7
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DISTVERSIONSUFFIX= -gfd40150
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= BWK awk modified for biological data
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LICENSE= BSD3CLAUSE
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USE_GITHUB= yes
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GH_ACCOUNT= lh3
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MAKE_JOBS_UNSAFE= yes
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ALL_TARGET= bioawk
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INSTALL_TARGET= install-strip
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PLIST_FILES= bin/bioawk
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.include <bsd.port.mk>
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