freebsd-ports/biology/samtools/files/patch-Makefile
Jason W. Bacon 025ca27d46 biology/samtools: Upgrade to 1.11
Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/samtools/releases/tag/1.11

Reported by:    portscout
2020-11-05 20:32:39 +00:00

35 lines
1 KiB
Text

--- Makefile.orig 2020-10-18 00:55:50 UTC
+++ Makefile
@@ -49,7 +49,8 @@ AOBJS= bam_index.o bam_plcmd.o sam_view.o bam_fas
bam_ampliconclip.o amplicon_stats.o
LZ4OBJS = $(LZ4DIR)/lz4.o
-prefix = /usr/local
+PREFIX ?= /usr/local
+prefix = $(PREFIX)
exec_prefix = $(prefix)
bindir = $(exec_prefix)/bin
datarootdir = $(prefix)/share
@@ -59,14 +60,14 @@ man1dir = $(mandir)/man1
# Installation location for $(MISC_PROGRAMS) and $(MISC_SCRIPTS)
misc_bindir = $(bindir)
-MKDIR_P = mkdir -p
-INSTALL = install -p
-INSTALL_DATA = $(INSTALL) -m 644
-INSTALL_DIR = $(MKDIR_P) -m 755
-INSTALL_MAN = $(INSTALL_DATA)
-INSTALL_PROGRAM = $(INSTALL)
-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
-
+# Use BSD_INSTALL_PROGRAM to strip when WITH_DEBUG not set
+MKDIR_P = mkdir -p
+INSTALL = install -p
+INSTALL_DATA = ${BSD_INSTALL_DATA}
+INSTALL_DIR = $(MKDIR_P)
+INSTALL_MAN = ${BSD_INSTALL_MAN}
+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
PROGRAMS = samtools