8 lines
436 B
Text
8 lines
436 B
Text
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports
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bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria
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(12S,16S) and eukaryotes (5S,5.8S,28S,18S).
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It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new
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nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.
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Multithreading is supported and one can expect roughly linear speed-ups with
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more CPUs.
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