freebsd-ports/biology/samtools/Makefile
2016-05-26 20:28:55 +00:00

44 lines
1.1 KiB
Makefile

# Created by: Reed A. Cartwright <cartwright@asu.edu>
# $FreeBSD$
PORTNAME= samtools
PORTVERSION= 1.3.1
CATEGORIES= biology
MAINTAINER= cartwright@asu.edu
COMMENT= Tools for manipulating next-generation sequencing data
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= htslib>=1.3:biology/htslib
LIB_DEPENDS= libhts.so:biology/htslib
TEST_DEPENDS= bash:shells/bash
USE_GITHUB= yes
USES= autoreconf gmake ncurses perl5 shebangfix
USE_PERL5= test
GNU_CONFIGURE= yes
SUB_FILES= pkg-message
SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
MAKE_ENV= INSTALL_LIB="${INSTALL_LIB}" \
INSTALL_DATA="${INSTALL_DATA}" \
INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
INSTALL_DIR="${MKDIR}"
PLIST_SUB= PORTVERSION="${PORTVERSION}"
TEST_TARGET= test
post-patch:
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac
${CP} ${FILESDIR}/ax_with_htslib.m4 ${WRKSRC}/
${CP} ${FILESDIR}/ax_with_curses.m4 ${WRKSRC}/
.include <bsd.port.mk>