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TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Note: TopHat has been Superseded by HISAT2 and is no longer maintained upstream. This port is provided mainly for revisiting old studies where TopHat was used.
11 lines
466 B
Text
11 lines
466 B
Text
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq
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reads to mammalian-sized genomes using the ultra high-throughput short read
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aligner Bowtie, and then analyzes the mapping results to identify splice
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junctions between exons.
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Note:
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TopHat has been Superseded by HISAT2 and is no longer maintained upstream.
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This port is provided mainly for revisiting old studies where TopHat was used.
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WWW: http://ccb.jhu.edu/software/tophat/index.shtml
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