57 lines
1.6 KiB
Makefile
57 lines
1.6 KiB
Makefile
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# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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###########################################################
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DISTNAME= ddocent-${PORTVERSION}
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CATEGORIES= biology
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MASTER_SITES= http://acadix.biz/Ports/distfiles/
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EXTRACT_SUFX= .tar.xz
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PKGNAME= ddocent-${PORTVERSION}
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MAINTAINER= dsiercks@uwm.edu
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HOMEPAGE= http://ddocent.wordpress.com/
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COMMENT= Bash pipeline for ddRAD sequencing
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LICENSE= mit
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NO_BUILD= yes
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REPLACE_BASH= scripts/*.sh scripts/dDocent_filters
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REPLACE_PERL= scripts/*.pl
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PORTVERSION= 2015.11.30
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# This subst is applied on top of patch-dDocent
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# Do not apply it within the source dist, or it will get picked up
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# next time the patch is generated with pkg-diff or mkpatches
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SUBST_CLASSES+= prefix
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SUBST_STAGE.prefix= post-install
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SUBST_FILES.prefix= ${DESTDIR}${PREFIX}/bin/dDocent
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SUBST_SED.prefix= -e 's|%%PREFIX%%|${PREFIX}|g'
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DEPENDS+= gnuplot>=3.7:../../graphics/gnuplot \
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cdhit>=4.6:../../biology/cdhit \
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parallel>=0:../../wip/parallel \
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gawk>=0:../../lang/gawk \
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vcftools>=0.1.11:../../wip/vcftools \
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stacks>=0:../../wip/stacks \
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Trimmomatic:../../wip/trimmomatic \
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seqtk>=0:../../wip/seqtk \
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bedtools2>=2.23.0:../../wip/bedtools2 \
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pear-merger>=0:../../wip/pear \
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mawk>=0:../../lang/mawk
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INSTALLATION_DIRS= bin
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do-install:
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${INSTALL_SCRIPT} \
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${WRKSRC}/dDocent \
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${WRKSRC}/scripts/* ${DESTDIR}${PREFIX}/bin
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.include "../../wip/bamtools/buildlink3.mk"
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.include "../../wip/freebayes/buildlink3.mk"
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.include "../../wip/samtools0119/buildlink3.mk"
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.include "../../wip/vcflib/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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