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py-causality, +py-eigency, +py-fancyimpute, +py-mdtraj, +py-sphinxcontrib-bibtex,

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update: py-theano
This commit is contained in:
K.I.A.Derouiche 2017-04-11 01:09:40 +01:00
parent 656acc3b06
commit 37a28d83a8
25 changed files with 1351 additions and 155 deletions
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1
.gitignore vendored
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*/work.*
# Temporary files
Makefile-url2pkg.bak
*~
\#*\#
*.orig

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Tools for causal analysis

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# $NetBSD$
DISTNAME= causality-0.0.3
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= devel
MASTER_SITES= ${MASTER_SITE_PYPI:=c/causality/}
MAINTAINER= kamelderouiche@yahoo.com
HOMEPAGE= http://github.com/akelleh/causality
COMMENT= Tools for causal analysis
LICENSE= mit
DEPENDS+= ${PYPKGPREFIX}-decorator>=4.0.10:../../devel/py-decorator
DEPENDS+= ${PYPKGPREFIX}-six-[0-9]*:../../lang/py-six
DEPENDS+= ${PYPKGPREFIX}-networkx>=1.11:../../math/py-networkx
DEPENDS+= ${PYPKGPREFIX}-patsy>=0.3.0:../../math/py-patsy
DEPENDS+= ${PYPKGPREFIX}-statsmodels>=0.8.0:../../math/py-statsmodels
DEPENDS+= ${PYPKGPREFIX}-scipy>=0.15.0:../../math/py-scipy
DEPENDS+= ${PYPKGPREFIX}-dateutil>=2.4.0:../../time/py-dateutil
WRKSRC= ${WRKDIR}/causality-0.0.3
USE_LANGUAGES= # none
.include "../../lang/python/egg.mk"
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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@comment $NetBSD$
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
${PYSITELIB}/${EGG_INFODIR}/pbr.json
${PYSITELIB}/${EGG_INFODIR}/requires.txt
${PYSITELIB}/${EGG_INFODIR}/top_level.txt
${PYSITELIB}/causality/__init__.py
${PYSITELIB}/causality/__init__.pyc
${PYSITELIB}/causality/__init__.pyo
${PYSITELIB}/causality/inference/__init__.py
${PYSITELIB}/causality/inference/__init__.pyc
${PYSITELIB}/causality/inference/__init__.pyo
${PYSITELIB}/causality/inference/independence_tests/__init__.py
${PYSITELIB}/causality/inference/independence_tests/__init__.pyc
${PYSITELIB}/causality/inference/independence_tests/__init__.pyo
${PYSITELIB}/causality/inference/search/__init__.py
${PYSITELIB}/causality/inference/search/__init__.pyc
${PYSITELIB}/causality/inference/search/__init__.pyo
${PYSITELIB}/causality/nonparametric/__init__.py
${PYSITELIB}/causality/nonparametric/__init__.pyc
${PYSITELIB}/causality/nonparametric/__init__.pyo
${PYSITELIB}/causality/nonparametric/causal_reg.py
${PYSITELIB}/causality/nonparametric/causal_reg.pyc
${PYSITELIB}/causality/nonparametric/causal_reg.pyo

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$NetBSD$
SHA1 (causality-0.0.3.tar.gz) = 0a43f07b89f8c76a8cb93e7d13aa4a97b8c65826
RMD160 (causality-0.0.3.tar.gz) = 96987f1ff335d2ca2ba9e9eace67561753cada68
SHA512 (causality-0.0.3.tar.gz) = ef41336c607be0a5dd708f106d776e36622cb4b90875fa3ed6f4a835c41fd576464a561c9a66f80f02d96aaca4a4a544f5f84eac860b65b54b6c40e08e87b808
Size (causality-0.0.3.tar.gz) = 9773 bytes

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Eigency is a Cython interface between Numpy arrays and Matrix/Array objects
from the Eigen C++ library. It is intended to simplify the process of writing
C++ extensions using the Eigen library. Eigency is designed to reuse the
underlying storage of the arrays when passing data back and forth, and will
thus avoid making unnecessary copies whenever possible. Only in cases where
copies are explicitly requested by your C++ code will they be made
(see example below)
Below is a description of a range of common usage scenarios. A full working
example of both setup and these different use cases is available in the test
directory distributed with the this package.

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# $NetBSD$
DISTNAME= eigency-1.75
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math python
MASTER_SITES= https://pypi.python.org/packages/55/a0/f6101aa64eb3840a2ca853dea2f8995e44a1a7633c5a70dce2b2672db019/
MAINTAINER= jihbed.research@gmail.com
HOMEPAGE= https://github.com/wouterboomsma/eigency
COMMENT= Cython interface between the numpy arrays and the Matrix/Array
LICENSE= mit
USE_LANGUAGES= c c++
.include "../../devel/py-cython/buildlink3.mk"
.include "../../lang/python/egg.mk"
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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@comment $NetBSD$
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
${PYSITELIB}/${EGG_INFODIR}/requires.txt
${PYSITELIB}/${EGG_INFODIR}/top_level.txt
${PYSITELIB}/eigency/__init__.py
${PYSITELIB}/eigency/__init__.pyc
${PYSITELIB}/eigency/__init__.pyo
${PYSITELIB}/eigency/conversions.h
${PYSITELIB}/eigency/conversions.pxd
${PYSITELIB}/eigency/conversions.pyx
${PYSITELIB}/eigency/conversions.so
${PYSITELIB}/eigency/conversions_api.h
${PYSITELIB}/eigency/core.pxd
${PYSITELIB}/eigency/core.pyx
${PYSITELIB}/eigency/core.so
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Array
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Cholesky
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/CholmodSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Core
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Dense
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Eigen
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Eigen2Support
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Eigenvalues
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Geometry
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Householder
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/IterativeLinearSolvers
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Jacobi
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/LU
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/LeastSquares
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/MetisSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/OrderingMethods
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/PaStiXSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/PardisoSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/QR
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/QtAlignedMalloc
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SPQRSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SVD
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/Sparse
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SparseCholesky
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SparseCore
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SparseLU
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SparseQR
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/StdDeque
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/StdList
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/StdVector
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/SuperLUSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/UmfPackSupport
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Cholesky/LDLT.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Cholesky/LLT.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Cholesky/LLT_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/CholmodSupport/CholmodSupport.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Array.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/ArrayBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/ArrayWrapper.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Assign.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Assign_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/BandMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Block.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/BooleanRedux.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CommaInitializer.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CoreIterators.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CwiseBinaryOp.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CwiseNullaryOp.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CwiseUnaryOp.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/CwiseUnaryView.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/DenseBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/DenseCoeffsBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/DenseStorage.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Diagonal.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/DiagonalMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/DiagonalProduct.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Dot.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/EigenBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Flagged.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/ForceAlignedAccess.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Functors.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Fuzzy.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/GeneralProduct.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/GenericPacketMath.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/GlobalFunctions.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/IO.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Map.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/MapBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/MathFunctions.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Matrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/MatrixBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/NestByValue.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/NoAlias.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/NumTraits.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/PermutationMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/PlainObjectBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/ProductBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Random.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Redux.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Ref.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Replicate.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/ReturnByValue.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Reverse.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Select.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/SelfAdjointView.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/SelfCwiseBinaryOp.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/SolveTriangular.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/StableNorm.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Stride.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Swap.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Transpose.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Transpositions.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/TriangularMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/VectorBlock.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/VectorwiseOp.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/Visitor.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/AltiVec/Complex.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/AltiVec/PacketMath.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/Default/Settings.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/NEON/Complex.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/NEON/PacketMath.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/SSE/Complex.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/SSE/MathFunctions.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/arch/SSE/PacketMath.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/CoeffBasedProduct.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralBlockPanelKernel.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixVector.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/Parallelizer.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointMatrixVector.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointProduct.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/SelfadjointRank2Update.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularMatrixMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularMatrixVector.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularSolverMatrix.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/products/TriangularSolverVector.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/BlasUtil.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/Constants.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/DisableStupidWarnings.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/ForwardDeclarations.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/MKL_support.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/Macros.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/Memory.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/Meta.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/NonMPL2.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/ReenableStupidWarnings.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/StaticAssert.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Core/util/XprHelper.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Block.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Cwise.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/CwiseOperators.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/All.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/Quaternion.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/RotationBase.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/Scaling.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Geometry/Transform.h
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${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/LU.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Lazy.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/LeastSquares.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Macros.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/MathFunctions.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Memory.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Meta.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/Minor.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/QR.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/SVD.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/TriangularSolver.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigen2Support/VectorBlock.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigenvalues/ComplexEigenSolver.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigenvalues/ComplexSchur.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigenvalues/EigenSolver.h
${PYSITELIB}/eigency/eigen_3.2.8/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
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6
py-eigency/distinfo Normal file
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$NetBSD$
SHA1 (eigency-1.75.tar.gz) = 66253c9f178ea9d8b93a4b03636a5474a7ffdf22
RMD160 (eigency-1.75.tar.gz) = ba475af3b26bf134ec6927edff2c57d73227846f
SHA512 (eigency-1.75.tar.gz) = 104421520b5534078e2f9af860ca7128b4ea8bfd6a1a754b99899fd07b4b1d17e3b3cc9f0e15faecc462f6ca72d8c4cc3482efef6ad5e1f33721be5f9ed2a9eb
Size (eigency-1.75.tar.gz) = 666157 bytes

1
py-fancyimpute/DESCR Normal file
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@ -0,0 +1 @@
A variety of matrix completion and imputation algorithms implemented in Python

19
py-fancyimpute/Makefile Normal file
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@ -0,0 +1,19 @@
# $NetBSD$
DISTNAME= fancyimpute-0.2.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= math
MASTER_SITES= https://pypi.python.org/packages/b8/4d/f460fe747949d2b84f21cfaebe58fe1de8f4dcd6779d5fc58adb2f885417/
MAINTAINER= jihbed.research@gmail.com
HOMEPAGE= https://github.com/hammerlab/fancyimpute
COMMENT= Matrix completion and feature imputation algorithms
LICENSE= apache-2.0
DEPENDS+= ${PYPKGPREFIX}-six-[0-9]*:../../lang/py-six
DEPENDS+= ${PYPKGPREFIX}-keras>=1.0.5:../../wip/py-keras
USE_LANGUAGES= # none
.include "../../lang/python/egg.mk"
.include "../../mk/bsd.pkg.mk"

49
py-fancyimpute/PLIST Normal file
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@ -0,0 +1,49 @@
@comment $NetBSD$
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
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6
py-fancyimpute/distinfo Normal file
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$NetBSD$
SHA1 (fancyimpute-0.2.0.tar.gz) = 71cf5d69bb82c558af5c01fa942e8d6ebd8af5db
RMD160 (fancyimpute-0.2.0.tar.gz) = 646df121cca786cc61038e9edd15842c83b3680e
SHA512 (fancyimpute-0.2.0.tar.gz) = e0cae98d143a3f12e5dde986434e6b149f3bc2337e655e5fcb0899de43e64cef93a67b02f3640e238f99225fa00c73d7ba9411b79c5e797a14ad5bd2678598e0
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7
py-mdtraj/DESCR Normal file
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MDTraj is a python library that allows users to manipulate molecular
dynamics(MD) trajectories and perform a variety of analyses, including
fast RMSD, solvent accessible surface area, hydrogen bonding, etc.
A highlight of MDTraj is the wide variety of molecular dynamics trajectory
file formats which are supported, including RCSB pdb, GROMACS xtc, tng,
and trr, CHARMM/NAMD dcd, AMBER binpos, AMBER NetCDF, AMBER mdcrd,
TINKER arc and MDTraj HDF5

20
py-mdtraj/Makefile Normal file
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@ -0,0 +1,20 @@
# $NetBSD$
DISTNAME= mdtraj-1.8.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= biology python
MASTER_SITES= https://pypi.python.org/packages/cd/9f/027fa58d4e93dd3d700e22d5766961c970f6882c2bffd33daef55219d078/
MAINTAINER= jihbed.research@gmail.com
HOMEPAGE= http://mdtraj.org/
COMMENT= The analysis of molecular dynamics trajectories
LICENSE= gnu-lgpl-v2.1
WRKSRC= ${WRKDIR}/mdtraj-1.8.0
USE_LANGUAGES= c c++
.include "../../devel/py-cython/buildlink3.mk"
.include "../../lang/python/egg.mk"
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

569
py-mdtraj/PLIST Normal file
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@comment $NetBSD$
bin/mdconvert
bin/mdinspect
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6
py-mdtraj/distinfo Normal file
View file

@ -0,0 +1,6 @@
$NetBSD$
SHA1 (mdtraj-1.8.0.tar.gz) = d06b8e7f3b5fc9fdba62a11bda77eb62416ceae8
RMD160 (mdtraj-1.8.0.tar.gz) = 539fa565eabff3bfccbc21cc787ecbcf27c7566a
SHA512 (mdtraj-1.8.0.tar.gz) = 636d563dd117d2b0a2605fa393cbd5b9079ccc7ccebe12b6ead438bed985fd8665867c3919ab6a0f303491dc350a9f912457cd1af531529d23d2025d792b006c
Size (mdtraj-1.8.0.tar.gz) = 19837940 bytes

3
py-sphinxcontrib-bibtex/DESCR Normal file
View file

@ -0,0 +1,3 @@
This extension allows BibTeX citations to be inserted into documentation
generated by Sphinx, via a bibliography directive, and a cite role, which
work similarly to LaTeX's thebibliography environment and \cite command.

17
py-sphinxcontrib-bibtex/Makefile Normal file
View file

@ -0,0 +1,17 @@
# $NetBSD$
DISTNAME= sphinxcontrib-bibtex-0.3.5
CATEGORIES= textproc python
MASTER_SITES= https://pypi.python.org/packages/6e/11/82f922ea948e2de4fc5f240ffd00311cb8b826dba90aae92f1ff3665877c/
MAINTAINER= kamelderouiche@yahoo.com
HOMEPAGE= https://github.com/mcmtroffaes/sphinxcontrib-bibtex
COMMENT= Sphinx extension for BibTeX style citations
LICENSE= modified-bsd
WRKSRC= ${WRKDIR}/sphinxcontrib-bibtex-0.3.5
USE_LANGUAGES= # none
.include "../../lang/python/egg.mk"
.include "../../mk/bsd.pkg.mk"

27
py-sphinxcontrib-bibtex/PLIST Normal file
View file

@ -0,0 +1,27 @@
@comment $NetBSD$
${PYSITELIB}/sphinxcontrib/bibtex/__init__.py
${PYSITELIB}/sphinxcontrib/bibtex/__init__.pyc
${PYSITELIB}/sphinxcontrib/bibtex/__init__.pyo
${PYSITELIB}/sphinxcontrib/bibtex/cache.py
${PYSITELIB}/sphinxcontrib/bibtex/cache.pyc
${PYSITELIB}/sphinxcontrib/bibtex/cache.pyo
${PYSITELIB}/sphinxcontrib/bibtex/directives.py
${PYSITELIB}/sphinxcontrib/bibtex/directives.pyc
${PYSITELIB}/sphinxcontrib/bibtex/directives.pyo
${PYSITELIB}/sphinxcontrib/bibtex/nodes.py
${PYSITELIB}/sphinxcontrib/bibtex/nodes.pyc
${PYSITELIB}/sphinxcontrib/bibtex/nodes.pyo
${PYSITELIB}/sphinxcontrib/bibtex/roles.py
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${PYSITELIB}/sphinxcontrib/bibtex/transforms.py
${PYSITELIB}/sphinxcontrib/bibtex/transforms.pyc
${PYSITELIB}/sphinxcontrib/bibtex/transforms.pyo
${PYSITELIB}/${EGG_NAME}-nspkg.pth
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
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${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
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${PYSITELIB}/${EGG_INFODIR}/top_level.txt

6
py-sphinxcontrib-bibtex/distinfo Normal file
View file

@ -0,0 +1,6 @@
$NetBSD$
SHA1 (sphinxcontrib-bibtex-0.3.5.tar.gz) = 9574dd7ac4cb5c8dc09a1df4320c47b0c9d84519
RMD160 (sphinxcontrib-bibtex-0.3.5.tar.gz) = 68445110c1c8a1f79ab38c56c0c262acee446052
SHA512 (sphinxcontrib-bibtex-0.3.5.tar.gz) = 4287ca8fe2f647e08c80f43beaca54fc5b15e4468871b547853db3fb13793271c351752aa4edc1b5b50ab4d9150f3a0698992193ddd8150966e067fa6fb93256
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13
py-theano/Makefile
View file

@ -1,9 +1,9 @@
# $NetBSD$
DISTNAME= Theano-0.8.2
DISTNAME= Theano-0.9.0
PKGNAME= ${PYPKGPREFIX}-${DISTNAME:tl}
CATEGORIES= math python
MASTER_SITES= ${MASTER_SITE_PYPI:=T/Theano/}
MASTER_SITES= https://pypi.python.org/packages/28/03/6af9ff242da966f89de6ab81164db0d1a36fd89379b7370f07043de62f10/
MAINTAINER= jihbed.research@gmail.com
HOMEPAGE= http://deeplearning.net/software/theano/
@ -11,16 +11,13 @@ COMMENT= Optimizing compiler for evaluating mathematical expressions
LICENSE= modified-bsd
DEPENDS+= ${PYPKGPREFIX}-nose>=1.3.7:../../devel/py-nose
DEPENDS+= ${PYPKGPREFIX}-six-[0-9]*:../../lang/py-six
DEPENDS+= ${PYPKGPREFIX}-scipy>=0.17.0:../../math/py-scipy
USE_TOOLS+= bash
USE_LANGUAGES= c c++
REPLACE_BASH+= theano/misc/check_blas_many.sh
post-extract:
${MV} ${WRKSRC}/bin/theano-cache ${WRKSRC}/bin/theano-cache${PYVERSSUFFIX}
${MV} ${WRKSRC}/bin/theano-nose ${WRKSRC}/bin/theano-nose${PYVERSSUFFIX}
${MV} ${WRKSRC}/bin/theano-test ${WRKSRC}/bin/theano-test${PYVERSSUFFIX}
PY_PATCHPLIST= yes
do-test:
${RUN} cd {WRKSRC}/theano/tests ; ${SETENV} {TEST_ENV} ${PYTHONBIN} main.py

335
py-theano/PLIST
View file

@ -1,22 +1,27 @@
@comment $NetBSD$
bin/theano-cache${PYVERSSUFFIX}
bin/theano-nose${PYVERSSUFFIX}
bin/theano-test${PYVERSSUFFIX}
bin/theano-cache
bin/theano-nose
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
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${PYSITELIB}/theano/compat/python2x.py
${PYSITELIB}/theano/compat/python2x.pyc
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${PYSITELIB}/theano/compat/six.py
${PYSITELIB}/theano/compat/six.pyc
${PYSITELIB}/theano/compat/six.pyo
@ -53,9 +58,6 @@ ${PYSITELIB}/theano/compile/ops.pyo
${PYSITELIB}/theano/compile/pfunc.py
${PYSITELIB}/theano/compile/pfunc.pyc
${PYSITELIB}/theano/compile/pfunc.pyo
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@ -274,6 +276,182 @@ ${PYSITELIB}/theano/gof/utils.pyo
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${PYSITELIB}/theano/gpuarray/tests/test_basic_ops.pyo
${PYSITELIB}/theano/gpuarray/tests/test_blas.py
${PYSITELIB}/theano/gpuarray/tests/test_blas.pyc
${PYSITELIB}/theano/gpuarray/tests/test_blas.pyo
${PYSITELIB}/theano/gpuarray/tests/test_blocksparse.py
${PYSITELIB}/theano/gpuarray/tests/test_blocksparse.pyc
${PYSITELIB}/theano/gpuarray/tests/test_blocksparse.pyo
${PYSITELIB}/theano/gpuarray/tests/test_cgpukernelbase.py
${PYSITELIB}/theano/gpuarray/tests/test_cgpukernelbase.pyc
${PYSITELIB}/theano/gpuarray/tests/test_cgpukernelbase.pyo
${PYSITELIB}/theano/gpuarray/tests/test_dnn.py
${PYSITELIB}/theano/gpuarray/tests/test_dnn.pyc
${PYSITELIB}/theano/gpuarray/tests/test_dnn.pyo
${PYSITELIB}/theano/gpuarray/tests/test_elemwise.py
${PYSITELIB}/theano/gpuarray/tests/test_elemwise.pyc
${PYSITELIB}/theano/gpuarray/tests/test_elemwise.pyo
${PYSITELIB}/theano/gpuarray/tests/test_extra_ops.py
${PYSITELIB}/theano/gpuarray/tests/test_extra_ops.pyc
${PYSITELIB}/theano/gpuarray/tests/test_extra_ops.pyo
${PYSITELIB}/theano/gpuarray/tests/test_fft.py
${PYSITELIB}/theano/gpuarray/tests/test_fft.pyc
${PYSITELIB}/theano/gpuarray/tests/test_fft.pyo
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr.py
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr.pyc
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr.pyo
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr3d.py
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr3d.pyc
${PYSITELIB}/theano/gpuarray/tests/test_gemmcorr3d.pyo
${PYSITELIB}/theano/gpuarray/tests/test_linalg.py
${PYSITELIB}/theano/gpuarray/tests/test_linalg.pyc
${PYSITELIB}/theano/gpuarray/tests/test_linalg.pyo
${PYSITELIB}/theano/gpuarray/tests/test_multinomial.py
${PYSITELIB}/theano/gpuarray/tests/test_multinomial.pyc
${PYSITELIB}/theano/gpuarray/tests/test_multinomial.pyo
${PYSITELIB}/theano/gpuarray/tests/test_neighbours.py
${PYSITELIB}/theano/gpuarray/tests/test_neighbours.pyc
${PYSITELIB}/theano/gpuarray/tests/test_neighbours.pyo
${PYSITELIB}/theano/gpuarray/tests/test_nerv.py
${PYSITELIB}/theano/gpuarray/tests/test_nerv.pyc
${PYSITELIB}/theano/gpuarray/tests/test_nerv.pyo
${PYSITELIB}/theano/gpuarray/tests/test_nnet.py
${PYSITELIB}/theano/gpuarray/tests/test_nnet.pyc
${PYSITELIB}/theano/gpuarray/tests/test_nnet.pyo
${PYSITELIB}/theano/gpuarray/tests/test_opt.py
${PYSITELIB}/theano/gpuarray/tests/test_opt.pyc
${PYSITELIB}/theano/gpuarray/tests/test_opt.pyo
${PYSITELIB}/theano/gpuarray/tests/test_pickle.py
${PYSITELIB}/theano/gpuarray/tests/test_pickle.pyc
${PYSITELIB}/theano/gpuarray/tests/test_pickle.pyo
${PYSITELIB}/theano/gpuarray/tests/test_pool.py
${PYSITELIB}/theano/gpuarray/tests/test_pool.pyc
${PYSITELIB}/theano/gpuarray/tests/test_pool.pyo
${PYSITELIB}/theano/gpuarray/tests/test_reduction.py
${PYSITELIB}/theano/gpuarray/tests/test_reduction.pyc
${PYSITELIB}/theano/gpuarray/tests/test_reduction.pyo
${PYSITELIB}/theano/gpuarray/tests/test_scan.py
${PYSITELIB}/theano/gpuarray/tests/test_scan.pyc
${PYSITELIB}/theano/gpuarray/tests/test_scan.pyo
${PYSITELIB}/theano/gpuarray/tests/test_subtensor.py
${PYSITELIB}/theano/gpuarray/tests/test_subtensor.pyc
${PYSITELIB}/theano/gpuarray/tests/test_subtensor.pyo
${PYSITELIB}/theano/gpuarray/tests/test_type.py
${PYSITELIB}/theano/gpuarray/tests/test_type.pyc
${PYSITELIB}/theano/gpuarray/tests/test_type.pyo
${PYSITELIB}/theano/gpuarray/tests/tstgpueye.c
${PYSITELIB}/theano/gpuarray/type.py
${PYSITELIB}/theano/gpuarray/type.pyc
${PYSITELIB}/theano/gpuarray/type.pyo
${PYSITELIB}/theano/gradient.py
${PYSITELIB}/theano/gradient.pyc
${PYSITELIB}/theano/gradient.pyo
@ -311,6 +489,9 @@ ${PYSITELIB}/theano/misc/elemwise_openmp_speedup.pyo
${PYSITELIB}/theano/misc/elemwise_time_test.py
${PYSITELIB}/theano/misc/elemwise_time_test.pyc
${PYSITELIB}/theano/misc/elemwise_time_test.pyo
${PYSITELIB}/theano/misc/frozendict.py
${PYSITELIB}/theano/misc/frozendict.pyc
${PYSITELIB}/theano/misc/frozendict.pyo
${PYSITELIB}/theano/misc/gh_api.py
${PYSITELIB}/theano/misc/gh_api.pyc
${PYSITELIB}/theano/misc/gh_api.pyo
@ -550,107 +731,6 @@ ${PYSITELIB}/theano/sandbox/fourier.pyo
${PYSITELIB}/theano/sandbox/gpuarray/__init__.py
${PYSITELIB}/theano/sandbox/gpuarray/__init__.pyc
${PYSITELIB}/theano/sandbox/gpuarray/__init__.pyo
${PYSITELIB}/theano/sandbox/gpuarray/basic_ops.py
${PYSITELIB}/theano/sandbox/gpuarray/basic_ops.pyc
${PYSITELIB}/theano/sandbox/gpuarray/basic_ops.pyo
${PYSITELIB}/theano/sandbox/gpuarray/blas.py
${PYSITELIB}/theano/sandbox/gpuarray/blas.pyc
${PYSITELIB}/theano/sandbox/gpuarray/blas.pyo
${PYSITELIB}/theano/sandbox/gpuarray/comp.py
${PYSITELIB}/theano/sandbox/gpuarray/comp.pyc
${PYSITELIB}/theano/sandbox/gpuarray/comp.pyo
${PYSITELIB}/theano/sandbox/gpuarray/conv_desc.c
${PYSITELIB}/theano/sandbox/gpuarray/cudnn_helper.h
${PYSITELIB}/theano/sandbox/gpuarray/dnn.py
${PYSITELIB}/theano/sandbox/gpuarray/dnn.pyc
${PYSITELIB}/theano/sandbox/gpuarray/dnn.pyo
${PYSITELIB}/theano/sandbox/gpuarray/dnn_base.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_conv_base.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_fwd.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_gi.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_gw.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_pool.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_pool_grad.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_softmax.c
${PYSITELIB}/theano/sandbox/gpuarray/dnn_softmax_grad.c
${PYSITELIB}/theano/sandbox/gpuarray/elemwise.py
${PYSITELIB}/theano/sandbox/gpuarray/elemwise.pyc
${PYSITELIB}/theano/sandbox/gpuarray/elemwise.pyo
${PYSITELIB}/theano/sandbox/gpuarray/fp16_help.py
${PYSITELIB}/theano/sandbox/gpuarray/fp16_help.pyc
${PYSITELIB}/theano/sandbox/gpuarray/fp16_help.pyo
${PYSITELIB}/theano/sandbox/gpuarray/gemm16.c
${PYSITELIB}/theano/sandbox/gpuarray/gpuarray_helper.h
${PYSITELIB}/theano/sandbox/gpuarray/kernel_codegen.py
${PYSITELIB}/theano/sandbox/gpuarray/kernel_codegen.pyc
${PYSITELIB}/theano/sandbox/gpuarray/kernel_codegen.pyo
${PYSITELIB}/theano/sandbox/gpuarray/neighbours.py
${PYSITELIB}/theano/sandbox/gpuarray/neighbours.pyc
${PYSITELIB}/theano/sandbox/gpuarray/neighbours.pyo
${PYSITELIB}/theano/sandbox/gpuarray/nerv.py
${PYSITELIB}/theano/sandbox/gpuarray/nerv.pyc
${PYSITELIB}/theano/sandbox/gpuarray/nerv.pyo
${PYSITELIB}/theano/sandbox/gpuarray/nnet.py
${PYSITELIB}/theano/sandbox/gpuarray/nnet.pyc
${PYSITELIB}/theano/sandbox/gpuarray/nnet.pyo
${PYSITELIB}/theano/sandbox/gpuarray/opt.py
${PYSITELIB}/theano/sandbox/gpuarray/opt.pyc
${PYSITELIB}/theano/sandbox/gpuarray/opt.pyo
${PYSITELIB}/theano/sandbox/gpuarray/opt_util.py
${PYSITELIB}/theano/sandbox/gpuarray/opt_util.pyc
${PYSITELIB}/theano/sandbox/gpuarray/opt_util.pyo
${PYSITELIB}/theano/sandbox/gpuarray/subtensor.py
${PYSITELIB}/theano/sandbox/gpuarray/subtensor.pyc
${PYSITELIB}/theano/sandbox/gpuarray/subtensor.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/GpuArray.pkl
${PYSITELIB}/theano/sandbox/gpuarray/tests/__init__.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/__init__.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/__init__.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/config.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/config.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/config.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_abstractconv.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_abstractconv.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_abstractconv.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_basic_ops.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_basic_ops.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_basic_ops.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_blas.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_blas.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_blas.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_dnn.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_dnn.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_dnn.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_elemwise.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_elemwise.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_elemwise.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_neighbours.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_neighbours.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_neighbours.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nerv.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nerv.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nerv.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nnet.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nnet.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_nnet.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_opt.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_opt.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_opt.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_pickle.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_pickle.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_pickle.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_scan.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_scan.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_scan.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_subtensor.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_subtensor.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_subtensor.pyo
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_type.py
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_type.pyc
${PYSITELIB}/theano/sandbox/gpuarray/tests/test_type.pyo
${PYSITELIB}/theano/sandbox/gpuarray/type.py
${PYSITELIB}/theano/sandbox/gpuarray/type.pyc
${PYSITELIB}/theano/sandbox/gpuarray/type.pyo
${PYSITELIB}/theano/sandbox/linalg/__init__.py
${PYSITELIB}/theano/sandbox/linalg/__init__.pyc
${PYSITELIB}/theano/sandbox/linalg/__init__.pyo
@ -669,16 +749,13 @@ ${PYSITELIB}/theano/sandbox/minimal.pyo
${PYSITELIB}/theano/sandbox/multinomial.py
${PYSITELIB}/theano/sandbox/multinomial.pyc
${PYSITELIB}/theano/sandbox/multinomial.pyo
${PYSITELIB}/theano/sandbox/neighbourhoods.py
${PYSITELIB}/theano/sandbox/neighbourhoods.pyc
${PYSITELIB}/theano/sandbox/neighbourhoods.pyo
${PYSITELIB}/theano/sandbox/neighbours.py
${PYSITELIB}/theano/sandbox/neighbours.pyc
${PYSITELIB}/theano/sandbox/neighbours.pyo
${PYSITELIB}/theano/sandbox/rng_mrg.py
${PYSITELIB}/theano/sandbox/rng_mrg.pyc
${PYSITELIB}/theano/sandbox/rng_mrg.pyo
${PYSITELIB}/theano/sandbox/samples_MRG31k3p_12_7_5.txt
${PYSITELIB}/theano/sandbox/samples_MRG31k3p_1${PYVERSSUFFIX}_5.txt
${PYSITELIB}/theano/sandbox/softsign.py
${PYSITELIB}/theano/sandbox/softsign.pyc
${PYSITELIB}/theano/sandbox/softsign.pyo
@ -695,9 +772,6 @@ ${PYSITELIB}/theano/sandbox/tests/test_multinomial.pyo
${PYSITELIB}/theano/sandbox/tests/test_multinomial_wo_replacement.py
${PYSITELIB}/theano/sandbox/tests/test_multinomial_wo_replacement.pyc
${PYSITELIB}/theano/sandbox/tests/test_multinomial_wo_replacement.pyo
${PYSITELIB}/theano/sandbox/tests/test_neighbourhoods.py
${PYSITELIB}/theano/sandbox/tests/test_neighbourhoods.pyc
${PYSITELIB}/theano/sandbox/tests/test_neighbourhoods.pyo
${PYSITELIB}/theano/sandbox/tests/test_rng_mrg.py
${PYSITELIB}/theano/sandbox/tests/test_rng_mrg.pyc
${PYSITELIB}/theano/sandbox/tests/test_rng_mrg.pyo
@ -737,6 +811,9 @@ ${PYSITELIB}/theano/scan_module/__init__.pyo
${PYSITELIB}/theano/scan_module/scan.py
${PYSITELIB}/theano/scan_module/scan.pyc
${PYSITELIB}/theano/scan_module/scan.pyo
${PYSITELIB}/theano/scan_module/scan_checkpoints.py
${PYSITELIB}/theano/scan_module/scan_checkpoints.pyc
${PYSITELIB}/theano/scan_module/scan_checkpoints.pyo
${PYSITELIB}/theano/scan_module/scan_op.py
${PYSITELIB}/theano/scan_module/scan_op.pyc
${PYSITELIB}/theano/scan_module/scan_op.pyo
@ -760,6 +837,9 @@ ${PYSITELIB}/theano/scan_module/tests/inconsistent_scan.pkl
${PYSITELIB}/theano/scan_module/tests/test_scan.py
${PYSITELIB}/theano/scan_module/tests/test_scan.pyc
${PYSITELIB}/theano/scan_module/tests/test_scan.pyo
${PYSITELIB}/theano/scan_module/tests/test_scan_checkpoints.py
${PYSITELIB}/theano/scan_module/tests/test_scan_checkpoints.pyc
${PYSITELIB}/theano/scan_module/tests/test_scan_checkpoints.pyo
${PYSITELIB}/theano/scan_module/tests/test_scan_opt.py
${PYSITELIB}/theano/scan_module/tests/test_scan_opt.pyc
${PYSITELIB}/theano/scan_module/tests/test_scan_opt.pyo
@ -820,6 +900,8 @@ ${PYSITELIB}/theano/sparse/utils.pyo
${PYSITELIB}/theano/tensor/__init__.py
${PYSITELIB}/theano/tensor/__init__.pyc
${PYSITELIB}/theano/tensor/__init__.pyo
${PYSITELIB}/theano/tensor/alt_gemm_common.c
${PYSITELIB}/theano/tensor/alt_gemm_template.c
${PYSITELIB}/theano/tensor/basic.py
${PYSITELIB}/theano/tensor/basic.pyc
${PYSITELIB}/theano/tensor/basic.pyo
@ -844,6 +926,9 @@ ${PYSITELIB}/theano/tensor/elemwise_cgen.pyo
${PYSITELIB}/theano/tensor/extra_ops.py
${PYSITELIB}/theano/tensor/extra_ops.pyc
${PYSITELIB}/theano/tensor/extra_ops.pyo
${PYSITELIB}/theano/tensor/fft.py
${PYSITELIB}/theano/tensor/fft.pyc
${PYSITELIB}/theano/tensor/fft.pyo
${PYSITELIB}/theano/tensor/fourier.py
${PYSITELIB}/theano/tensor/fourier.pyc
${PYSITELIB}/theano/tensor/fourier.pyo
@ -886,6 +971,10 @@ ${PYSITELIB}/theano/tensor/nnet/conv3d2d.pyo
${PYSITELIB}/theano/tensor/nnet/corr.py
${PYSITELIB}/theano/tensor/nnet/corr.pyc
${PYSITELIB}/theano/tensor/nnet/corr.pyo
${PYSITELIB}/theano/tensor/nnet/corr3d.py
${PYSITELIB}/theano/tensor/nnet/corr3d.pyc
${PYSITELIB}/theano/tensor/nnet/corr3d.pyo
${PYSITELIB}/theano/tensor/nnet/corr3d_gemm.c
${PYSITELIB}/theano/tensor/nnet/corr_gemm.c
${PYSITELIB}/theano/tensor/nnet/neighbours.py
${PYSITELIB}/theano/tensor/nnet/neighbours.pyc
@ -926,6 +1015,9 @@ ${PYSITELIB}/theano/tensor/nnet/tests/test_conv3d2d.pyo
${PYSITELIB}/theano/tensor/nnet/tests/test_corr.py
${PYSITELIB}/theano/tensor/nnet/tests/test_corr.pyc
${PYSITELIB}/theano/tensor/nnet/tests/test_corr.pyo
${PYSITELIB}/theano/tensor/nnet/tests/test_corr3d.py
${PYSITELIB}/theano/tensor/nnet/tests/test_corr3d.pyc
${PYSITELIB}/theano/tensor/nnet/tests/test_corr3d.pyo
${PYSITELIB}/theano/tensor/nnet/tests/test_neighbours.py
${PYSITELIB}/theano/tensor/nnet/tests/test_neighbours.pyc
${PYSITELIB}/theano/tensor/nnet/tests/test_neighbours.pyo
@ -959,15 +1051,13 @@ ${PYSITELIB}/theano/tensor/signal/__init__.pyo
${PYSITELIB}/theano/tensor/signal/conv.py
${PYSITELIB}/theano/tensor/signal/conv.pyc
${PYSITELIB}/theano/tensor/signal/conv.pyo
${PYSITELIB}/theano/tensor/signal/downsample.py
${PYSITELIB}/theano/tensor/signal/downsample.pyc
${PYSITELIB}/theano/tensor/signal/downsample.pyo
${PYSITELIB}/theano/tensor/signal/pool.py
${PYSITELIB}/theano/tensor/signal/pool.pyc
${PYSITELIB}/theano/tensor/signal/pool.pyo
${PYSITELIB}/theano/tensor/signal/tests/__init__.py
${PYSITELIB}/theano/tensor/signal/tests/__init__.pyc
${PYSITELIB}/theano/tensor/signal/tests/__init__.pyo
${PYSITELIB}/theano/tensor/signal/tests/old_pool_interface.pkl
${PYSITELIB}/theano/tensor/signal/tests/test_conv.py
${PYSITELIB}/theano/tensor/signal/tests/test_conv.pyc
${PYSITELIB}/theano/tensor/signal/tests/test_conv.pyo
@ -1017,6 +1107,9 @@ ${PYSITELIB}/theano/tensor/tests/test_elemwise.pyo
${PYSITELIB}/theano/tensor/tests/test_extra_ops.py
${PYSITELIB}/theano/tensor/tests/test_extra_ops.pyc
${PYSITELIB}/theano/tensor/tests/test_extra_ops.pyo
${PYSITELIB}/theano/tensor/tests/test_fft.py
${PYSITELIB}/theano/tensor/tests/test_fft.pyc
${PYSITELIB}/theano/tensor/tests/test_fft.pyo
${PYSITELIB}/theano/tensor/tests/test_fourier.py
${PYSITELIB}/theano/tensor/tests/test_fourier.pyc
${PYSITELIB}/theano/tensor/tests/test_fourier.pyo

9
py-theano/distinfo
View file

@ -1,7 +1,6 @@
$NetBSD: distinfo,v 1.2 2015/01/26 21:21:52 jihbed Exp $
SHA1 (Theano-0.8.2.tar.gz) = c668e6c9dd5e59bb079e938f964626b96fd555cb
RMD160 (Theano-0.8.2.tar.gz) = 3ba9c49fe7149e5a6b773d9a394bbe6752d9e3ba
SHA512 (Theano-0.8.2.tar.gz) = d7bad7ed4c9453470b66df2ada4587fbe9effc134c0604d11576630a613568386d41aa7dd4a77f8b7a1eb6d8a2f76a8e809b1ac3ae18c85a0c55ba4a059b865e
Size (Theano-0.8.2.tar.gz) = 2914631 bytes
SHA1 (patch-setup.py) = 97d3d1d78ccc30649d8536483e21a8c2bcdf6917
SHA1 (Theano-0.9.0.tar.gz) = 0b01e8a2454b9b7209466acf8267a5894fe49d6a
RMD160 (Theano-0.9.0.tar.gz) = 668f68ff2333d1c0f259761288b7accc07993a6b
SHA512 (Theano-0.9.0.tar.gz) = e0e59256d2442f929fb120b4b21cab735e0a8ba087c4ea7d7caeabe8fa30cc19a46181fe1b4e268e778344fb3506eb20d8090dfc8d2a499c1bf84b07352686ab
Size (Theano-0.9.0.tar.gz) = 3116713 bytes

21
py-theano/patches/patch-setup.py
View file

@ -1,21 +0,0 @@
$NetBSD$
--- setup.py.orig 2016-04-21 12:04:08.000000000 +0000
+++ setup.py
@@ -5,6 +5,7 @@
# * Add download_url
import os
+import sys
import subprocess
import codecs
from fnmatch import fnmatchcase
@@ -174,7 +175,7 @@ def do_setup():
'theano.misc': ['*.sh'],
'theano.d3viz' : ['html/*','css/*','js/*']
},
- scripts=['bin/theano-cache', 'bin/theano-nose', 'bin/theano-test'],
+ scripts=['bin/theano-cache'+sys.version[0:3], 'bin/theano-nose'+sys.version[0:3], 'bin/theano-test'+sys.version[0:3]],
keywords=' '.join([
'theano', 'math', 'numerical', 'symbolic', 'blas',
'numpy', 'gpu', 'autodiff', 'differentiation'