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epacts: Fix build (Add R bl3)

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This commit is contained in:
Jason Bacon 2017-08-31 16:04:34 -05:00
parent a13681acea
commit e127101527
2 changed files with 39 additions and 8 deletions
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9
epacts/Makefile
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@ -19,11 +19,7 @@ COMMENT= Efficient and Parallelizable Association Container Toolbox
# Check this
LICENSE= gnu-gpl-v3
# Test and change if necessary.
# MAKE_JOBS_SAFE= no
DEPENDS+= gnuplot>=0:../../graphics/gnuplot
DEPENDS+= R>=0:../../math/R
# Just assuming C and C++: Adjust this!
USE_LANGUAGES= c c++
@ -42,11 +38,10 @@ pre-configure:
cd ${WRKSRC} && autoreconf -if
post-install:
${STRIP_CMD} \
${STRIP} \
${DESTDIR}${PREFIX}/lib/mmSKAT/libs/mmSKAT.so \
${DESTDIR}${PREFIX}/lib/epactsR/libs/epactsR.so
# Convert any _DEPENDS above that have a buildlink3.mk
# .include "../..///buildlink3.mk"
.include "../../math/R/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

38
epacts/PLIST
View file

@ -23,6 +23,43 @@ bin/tabix
bin/test_run_epacts.sh
bin/vcfast
bin/wGetOptions.pm
lib/epactsR/DESCRIPTION
lib/epactsR/Meta/Rd.rds
lib/epactsR/Meta/hsearch.rds
lib/epactsR/Meta/links.rds
lib/epactsR/Meta/nsInfo.rds
lib/epactsR/Meta/package.rds
lib/epactsR/NAMESPACE
lib/epactsR/help/AnIndex
lib/epactsR/help/aliases.rds
lib/epactsR/help/epactsR.rdb
lib/epactsR/help/epactsR.rdx
lib/epactsR/help/paths.rds
lib/epactsR/html/00Index.html
lib/epactsR/html/R.css
lib/epactsR/libs/epactsR.so
lib/mmSKAT/DESCRIPTION
lib/mmSKAT/Meta/Rd.rds
lib/mmSKAT/Meta/data.rds
lib/mmSKAT/Meta/hsearch.rds
lib/mmSKAT/Meta/links.rds
lib/mmSKAT/Meta/nsInfo.rds
lib/mmSKAT/Meta/package.rds
lib/mmSKAT/NAMESPACE
lib/mmSKAT/R/mmSKAT
lib/mmSKAT/R/mmSKAT.rdb
lib/mmSKAT/R/mmSKAT.rdx
lib/mmSKAT/data/SKAT.example.rda
lib/mmSKAT/data/SKAT.haplotypes.rda
lib/mmSKAT/data/datalist
lib/mmSKAT/help/AnIndex
lib/mmSKAT/help/aliases.rds
lib/mmSKAT/help/mmSKAT.rdb
lib/mmSKAT/help/mmSKAT.rdx
lib/mmSKAT/help/paths.rds
lib/mmSKAT/html/00Index.html
lib/mmSKAT/html/R.css
lib/mmSKAT/libs/mmSKAT.so
share/EPACTS/1000G_dummy_pheno.ped
share/EPACTS/1000G_exome_chr20_example_softFiltered.calls.vcf.gz
share/EPACTS/1000G_exome_chr20_example_softFiltered.calls.vcf.gz.tbi
@ -84,4 +121,3 @@ share/EPACTS/wgEncodeBroadHmmNhekHMM.bed.gz
share/EPACTS/wgEncodeBroadHmmNhekHMM.bed.gz.tbi
share/EPACTS/wgEncodeBroadHmmNhlfHMM.bed.gz
share/EPACTS/wgEncodeBroadHmmNhlfHMM.bed.gz.tbi
@pkgdir lib