epacts: Fix build (Add R bl3)
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a13681acea
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e127101527
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@ -19,11 +19,7 @@ COMMENT= Efficient and Parallelizable Association Container Toolbox
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# Check this
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LICENSE= gnu-gpl-v3
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# Test and change if necessary.
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# MAKE_JOBS_SAFE= no
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DEPENDS+= gnuplot>=0:../../graphics/gnuplot
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DEPENDS+= R>=0:../../math/R
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# Just assuming C and C++: Adjust this!
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USE_LANGUAGES= c c++
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@ -42,11 +38,10 @@ pre-configure:
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cd ${WRKSRC} && autoreconf -if
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post-install:
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${STRIP_CMD} \
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${STRIP} \
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${DESTDIR}${PREFIX}/lib/mmSKAT/libs/mmSKAT.so \
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${DESTDIR}${PREFIX}/lib/epactsR/libs/epactsR.so
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# Convert any _DEPENDS above that have a buildlink3.mk
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# .include "../..///buildlink3.mk"
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.include "../../math/R/buildlink3.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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38
epacts/PLIST
38
epacts/PLIST
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@ -23,6 +23,43 @@ bin/tabix
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bin/test_run_epacts.sh
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bin/vcfast
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bin/wGetOptions.pm
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lib/epactsR/DESCRIPTION
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lib/epactsR/Meta/Rd.rds
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lib/epactsR/Meta/hsearch.rds
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lib/epactsR/Meta/links.rds
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lib/epactsR/Meta/nsInfo.rds
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lib/epactsR/Meta/package.rds
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lib/epactsR/NAMESPACE
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lib/epactsR/help/AnIndex
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lib/epactsR/help/aliases.rds
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lib/epactsR/help/epactsR.rdb
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lib/epactsR/help/epactsR.rdx
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lib/epactsR/help/paths.rds
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lib/epactsR/html/00Index.html
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lib/epactsR/html/R.css
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lib/epactsR/libs/epactsR.so
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lib/mmSKAT/DESCRIPTION
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lib/mmSKAT/Meta/Rd.rds
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lib/mmSKAT/Meta/data.rds
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lib/mmSKAT/Meta/hsearch.rds
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lib/mmSKAT/Meta/links.rds
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lib/mmSKAT/Meta/nsInfo.rds
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lib/mmSKAT/Meta/package.rds
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lib/mmSKAT/NAMESPACE
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lib/mmSKAT/R/mmSKAT
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lib/mmSKAT/R/mmSKAT.rdb
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lib/mmSKAT/R/mmSKAT.rdx
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lib/mmSKAT/data/SKAT.example.rda
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lib/mmSKAT/data/SKAT.haplotypes.rda
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lib/mmSKAT/data/datalist
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lib/mmSKAT/help/AnIndex
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lib/mmSKAT/help/aliases.rds
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lib/mmSKAT/help/mmSKAT.rdb
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lib/mmSKAT/help/mmSKAT.rdx
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lib/mmSKAT/help/paths.rds
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lib/mmSKAT/html/00Index.html
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lib/mmSKAT/html/R.css
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lib/mmSKAT/libs/mmSKAT.so
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share/EPACTS/1000G_dummy_pheno.ped
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share/EPACTS/1000G_exome_chr20_example_softFiltered.calls.vcf.gz
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share/EPACTS/1000G_exome_chr20_example_softFiltered.calls.vcf.gz.tbi
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@ -84,4 +121,3 @@ share/EPACTS/wgEncodeBroadHmmNhekHMM.bed.gz
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share/EPACTS/wgEncodeBroadHmmNhekHMM.bed.gz.tbi
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share/EPACTS/wgEncodeBroadHmmNhlfHMM.bed.gz
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share/EPACTS/wgEncodeBroadHmmNhlfHMM.bed.gz.tbi
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@pkgdir lib
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