Import py26-ruffus-2.2 as wip/py-ruffus.
Lightweight python module to run computational pipelines
This commit is contained in:
Kamel Ibn Aziz Derouiche
Thomas Klausner
parent
d8d5a71e4e
commit
f19ba7e07d
4 changed files with 184 additions and 0 deletions
1
py-ruffus/DESCR
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py-ruffus/DESCR
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Lightweight python module to run computational pipelines
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py-ruffus/Makefile
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py-ruffus/Makefile
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# $NetBSD: Makefile,v 1.1.1.1 2011/01/17 22:16:29 jihbed Exp $
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#
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DISTNAME= ruffus-2.2
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PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
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CATEGORIES= science python
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MASTER_SITES= http://pypi.python.org/packages/source/r/ruffus/
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EXTRACT_SUFX= .zip
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MAINTAINER= jihbed.research@gmail.com
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HOMEPAGE= http://www.ruffus.org.uk/index.html
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COMMENT= Lightweight python module to run computational pipelines
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LICENSE= mit
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DEPENDS+= ${PYPKGPREFIX}-simplejson>=2.1.1:../../converters/py-simplejson
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DEPENDS+= ${PYPKGPREFIX}-multiprocessing>=2.6.2.1:../../devel/py-multiprocessing
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PKG_DESTDIR_SUPPORT= user-destdir
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USE_LANGUAGES= # none
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PYTHON_VERSIONS_ACCEPTED= 26 25
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.include "../../lang/python/egg.mk"
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.include "../../mk/bsd.pkg.mk"
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153
py-ruffus/PLIST
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py-ruffus/PLIST
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@comment $NetBSD: PLIST,v 1.1.1.1 2011/01/17 22:16:29 jihbed Exp $
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${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
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${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
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${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
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${PYSITELIB}/${EGG_INFODIR}/top_level.txt
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${PYSITELIB}/ruffus/__init__.py
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${PYSITELIB}/ruffus/__init__.pyc
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${PYSITELIB}/ruffus/__init__.pyo
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${PYSITELIB}/ruffus/adjacent_pairs_iterate.py
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${PYSITELIB}/ruffus/adjacent_pairs_iterate.pyc
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${PYSITELIB}/ruffus/adjacent_pairs_iterate.pyo
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${PYSITELIB}/ruffus/file_name_parameters.py
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${PYSITELIB}/ruffus/file_name_parameters.pyc
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${PYSITELIB}/ruffus/file_name_parameters.pyo
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${PYSITELIB}/ruffus/graph.py
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${PYSITELIB}/ruffus/graph.pyc
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${PYSITELIB}/ruffus/graph.pyo
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${PYSITELIB}/ruffus/print_dependencies.py
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${PYSITELIB}/ruffus/print_dependencies.pyc
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${PYSITELIB}/ruffus/print_dependencies.pyo
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${PYSITELIB}/ruffus/proxy_logger.py
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${PYSITELIB}/ruffus/proxy_logger.pyc
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${PYSITELIB}/ruffus/proxy_logger.pyo
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${PYSITELIB}/ruffus/re_glob.py
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${PYSITELIB}/ruffus/re_glob.pyc
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${PYSITELIB}/ruffus/re_glob.pyo
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${PYSITELIB}/ruffus/ruffus_exceptions.py
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${PYSITELIB}/ruffus/ruffus_exceptions.pyc
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${PYSITELIB}/ruffus/ruffus_exceptions.pyo
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${PYSITELIB}/ruffus/ruffus_utility.py
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${PYSITELIB}/ruffus/ruffus_utility.pyc
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${PYSITELIB}/ruffus/ruffus_utility.pyo
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${PYSITELIB}/ruffus/ruffus_version.py
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${PYSITELIB}/ruffus/ruffus_version.pyc
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${PYSITELIB}/ruffus/ruffus_version.pyo
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${PYSITELIB}/ruffus/svn-commit.tmp
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${PYSITELIB}/ruffus/task.py
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${PYSITELIB}/ruffus/task.pyc
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${PYSITELIB}/ruffus/task.pyo
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/parallel.py
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/parallel.pyc
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/parallel.pyo
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simple.py
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simple.pyc
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simple.pyo
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simpler.py
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simpler.pyc
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${PYSITELIB}/ruffus/test/auto_generated_pipeline_examples/simpler.pyo
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${PYSITELIB}/ruffus/test/complicated_example.py
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${PYSITELIB}/ruffus/test/complicated_example.pyc
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${PYSITELIB}/ruffus/test/complicated_example.pyo
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${PYSITELIB}/ruffus/test/create_test_script_from_dependency_tree.py
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${PYSITELIB}/ruffus/test/create_test_script_from_dependency_tree.pyc
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${PYSITELIB}/ruffus/test/create_test_script_from_dependency_tree.pyo
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${PYSITELIB}/ruffus/test/data_for_complicated_example/all_genes_in_each_species/fly.genes.fa
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${PYSITELIB}/ruffus/test/data_for_complicated_example/all_genes_in_each_species/octopus.genes.fa
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${PYSITELIB}/ruffus/test/data_for_complicated_example/all_genes_in_each_species/spider.genes.fa
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${PYSITELIB}/ruffus/test/data_for_complicated_example/all_genes_in_each_species/worm.genes.fa
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${PYSITELIB}/ruffus/test/data_for_complicated_example/unknown_genes/gene_sets1.genes.fa
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${PYSITELIB}/ruffus/test/data_for_complicated_example/unknown_genes/gene_sets2.genes.fa
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${PYSITELIB}/ruffus/test/dependency_data/dag.dependency
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${PYSITELIB}/ruffus/test/dependency_data/non_dag.dependency
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${PYSITELIB}/ruffus/test/dependency_data/simple.dag
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${PYSITELIB}/ruffus/test/dependency_data/simpler.dag
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${PYSITELIB}/ruffus/test/draw_specified_dependency_tree.py
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${PYSITELIB}/ruffus/test/draw_specified_dependency_tree.pyc
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${PYSITELIB}/ruffus/test/draw_specified_dependency_tree.pyo
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${PYSITELIB}/ruffus/test/play_with_colours.py
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${PYSITELIB}/ruffus/test/play_with_colours.pyc
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${PYSITELIB}/ruffus/test/play_with_colours.pyo
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${PYSITELIB}/ruffus/test/qrsh_workaround.py
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${PYSITELIB}/ruffus/test/qrsh_workaround.pyc
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${PYSITELIB}/ruffus/test/qrsh_workaround.pyo
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${PYSITELIB}/ruffus/test/run_all_unit_tests.cmd
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${PYSITELIB}/ruffus/test/simpler.py
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${PYSITELIB}/ruffus/test/simpler.pyc
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${PYSITELIB}/ruffus/test/simpler.pyo
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${PYSITELIB}/ruffus/test/simpler_at_runtime.py
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${PYSITELIB}/ruffus/test/simpler_at_runtime.pyc
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${PYSITELIB}/ruffus/test/simpler_at_runtime.pyo
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${PYSITELIB}/ruffus/test/simpler_with_shared_logging.py
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${PYSITELIB}/ruffus/test/simpler_with_shared_logging.pyc
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${PYSITELIB}/ruffus/test/simpler_with_shared_logging.pyo
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${PYSITELIB}/ruffus/test/test_N_x_M_and_collate.py
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${PYSITELIB}/ruffus/test/test_N_x_M_and_collate.pyc
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${PYSITELIB}/ruffus/test/test_N_x_M_and_collate.pyo
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${PYSITELIB}/ruffus/test/test_branching_dependencies.py
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${PYSITELIB}/ruffus/test/test_branching_dependencies.pyc
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${PYSITELIB}/ruffus/test/test_branching_dependencies.pyo
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${PYSITELIB}/ruffus/test/test_collate.py
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${PYSITELIB}/ruffus/test/test_collate.pyc
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${PYSITELIB}/ruffus/test/test_collate.pyo
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${PYSITELIB}/ruffus/test/test_empty_files_decorator.py
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${PYSITELIB}/ruffus/test/test_empty_files_decorator.pyc
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${PYSITELIB}/ruffus/test/test_empty_files_decorator.pyo
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${PYSITELIB}/ruffus/test/test_exceptions.py
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${PYSITELIB}/ruffus/test/test_exceptions.pyc
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${PYSITELIB}/ruffus/test/test_exceptions.pyo
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${PYSITELIB}/ruffus/test/test_file_name_parameters.py
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${PYSITELIB}/ruffus/test/test_file_name_parameters.pyc
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${PYSITELIB}/ruffus/test/test_file_name_parameters.pyo
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${PYSITELIB}/ruffus/test/test_files_decorator.py
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${PYSITELIB}/ruffus/test/test_files_decorator.pyc
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${PYSITELIB}/ruffus/test/test_files_decorator.pyo
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${PYSITELIB}/ruffus/test/test_files_post_merge.py
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${PYSITELIB}/ruffus/test/test_files_post_merge.pyc
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${PYSITELIB}/ruffus/test/test_files_post_merge.pyo
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${PYSITELIB}/ruffus/test/test_filesre_combine.py
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${PYSITELIB}/ruffus/test/test_filesre_combine.pyc
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${PYSITELIB}/ruffus/test/test_filesre_combine.pyo
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${PYSITELIB}/ruffus/test/test_filesre_split_and_combine.py
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${PYSITELIB}/ruffus/test/test_filesre_split_and_combine.pyc
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${PYSITELIB}/ruffus/test/test_filesre_split_and_combine.pyo
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${PYSITELIB}/ruffus/test/test_follows_mkdir.py
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${PYSITELIB}/ruffus/test/test_follows_mkdir.pyc
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${PYSITELIB}/ruffus/test/test_follows_mkdir.pyo
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${PYSITELIB}/ruffus/test/test_inputs_with_multiple_args_raising_exception.py
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${PYSITELIB}/ruffus/test/test_inputs_with_multiple_args_raising_exception.pyc
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${PYSITELIB}/ruffus/test/test_inputs_with_multiple_args_raising_exception.pyo
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${PYSITELIB}/ruffus/test/test_pausing.py
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${PYSITELIB}/ruffus/test/test_pausing.pyc
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${PYSITELIB}/ruffus/test/test_pausing.pyo
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${PYSITELIB}/ruffus/test/test_ruffus_utility.py
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${PYSITELIB}/ruffus/test/test_ruffus_utility.pyc
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${PYSITELIB}/ruffus/test/test_ruffus_utility.pyo
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${PYSITELIB}/ruffus/test/test_script.py_template
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${PYSITELIB}/ruffus/test/test_split_and_combine.py
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${PYSITELIB}/ruffus/test/test_split_and_combine.pyc
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${PYSITELIB}/ruffus/test/test_split_and_combine.pyo
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${PYSITELIB}/ruffus/test/test_split_regex_and_collate.py
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${PYSITELIB}/ruffus/test/test_split_regex_and_collate.pyc
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${PYSITELIB}/ruffus/test/test_split_regex_and_collate.pyo
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${PYSITELIB}/ruffus/test/test_task_file_dependencies.py
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${PYSITELIB}/ruffus/test/test_task_file_dependencies.pyc
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${PYSITELIB}/ruffus/test/test_task_file_dependencies.pyo
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${PYSITELIB}/ruffus/test/test_task_misc.py
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${PYSITELIB}/ruffus/test/test_task_misc.pyc
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${PYSITELIB}/ruffus/test/test_task_misc.pyo
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${PYSITELIB}/ruffus/test/test_transform_add_inputs.py
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${PYSITELIB}/ruffus/test/test_transform_add_inputs.pyc
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${PYSITELIB}/ruffus/test/test_transform_add_inputs.pyo
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${PYSITELIB}/ruffus/test/test_transform_inputs.py
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${PYSITELIB}/ruffus/test/test_transform_inputs.pyc
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${PYSITELIB}/ruffus/test/test_transform_inputs.pyo
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${PYSITELIB}/ruffus/test/test_transform_with_no_re_matches.py
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${PYSITELIB}/ruffus/test/test_transform_with_no_re_matches.pyc
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${PYSITELIB}/ruffus/test/test_transform_with_no_re_matches.pyo
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${PYSITELIB}/ruffus/test/test_tutorial7.py
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${PYSITELIB}/ruffus/test/test_tutorial7.pyc
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${PYSITELIB}/ruffus/test/test_tutorial7.pyo
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${PYSITELIB}/ruffus/test/test_unicode_filenames.py
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${PYSITELIB}/ruffus/test/test_unicode_filenames.pyc
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${PYSITELIB}/ruffus/test/test_unicode_filenames.pyo
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5
py-ruffus/distinfo
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py-ruffus/distinfo
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$NetBSD: distinfo,v 1.1.1.1 2011/01/17 22:16:29 jihbed Exp $
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SHA1 (ruffus-2.2.zip) = a1e21cdeaa5fffcea3c5c9c484302a23392c6c58
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RMD160 (ruffus-2.2.zip) = 564e8b57d7f52f93418e666bc6f765e7d90eeba0
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Size (ruffus-2.2.zip) = 5946177 bytes
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