Commit graph

40418 commits

Author SHA1 Message Date
Kamel Ibn Aziz Derouiche
062e257712 Import py27-csb-1.2.3 as wip/py-csb.
Computational Structural Biology Toolbox
2014-06-20 19:57:21 +00:00
Kamel Ibn Aziz Derouiche
db7bfd4e66 Update component 2014-06-20 19:16:45 +00:00
Kamel Ibn Aziz Derouiche
5fd66a3f8e Import py27-nfg-0.1.2 as wip/py-ngf.
PyNFG is designed to make it easy for researchers to model strategic
environments using the Network Form Game (NFG) formalism developed by David
Wolpert with contributions from Ritchie Lee, James Bono and others. The main
idea of the NFG framework is to translate a strategic environment into the
language of probabilistic graphical models. The result is a more intuitive,
powerful, and user-friendly framework than the extensive form
2014-06-20 19:14:30 +00:00
Kamel Ibn Aziz Derouiche
306c308862 Import py27-fnss-0.5.0 as wip/py-fnss. 2014-06-20 18:20:42 +00:00
Makoto Fujiwara
c8d232e5af Add patch to resolve following error
StdDefs.c: In function 'putstr':
  StdDefs.c:120:4: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign]
      for (j = 0; j <= strlen(s); j++)
          ^
2014-06-20 14:33:28 +00:00
Makoto Fujiwara
fd3741d6f0 Resolve (or adjust to avr-gcc-4.8.3) libiberty.a not found problem. 2014-06-20 13:00:38 +00:00
Makoto Fujiwara
2bb92563f8 Correction (Removing) the harmful line (if ${AVR_TARGET} is empty), as
-BUILDLINK_FNAME_TRANSFORM.avr-gcc+=    -e "s,${AVR_TARGET}/lib/,lib/,g"
(with comment, getting .builkdlink/lib/ -> .buildlinklib/ )

Looking for the resolution for packaging emulators/simulavr and
wip/simulavr-git (former has another problem now).
2014-06-20 12:37:08 +00:00
Kamel Ibn Aziz Derouiche
1135060984 Import py27-hdf5storage-0.1.1 as wip/py-hdf5storage.
Utilities to read/write Python types to/from HDF5 files, including MATLAB v7.3
MAT files
2014-06-20 10:58:12 +00:00
Kamel Ibn Aziz Derouiche
17f35f28d4 Import py27-pseudopy-1.2.1 as wip/py-pseudopy.
Compute and visualize pseudospectra of matrices
2014-06-20 10:46:03 +00:00
Kamel Ibn Aziz Derouiche
aeb47fbb68 Update component 2014-06-20 10:40:28 +00:00
Kamel Ibn Aziz Derouiche
f24ebc9581 Import py27-ctutils-0.1 as wip/py-ctutils.
ctutils is a set of simple tools for analyzing data in CT scans
Currently the project supports scans in TXM format
(as produced by Xradia products), VGI format (as produced by ??? products),
and TIFF stacks
2014-06-20 09:40:55 +00:00
Kamel Ibn Aziz Derouiche
d085b7e534 Import py27-mipp-0.9 as wip/py-mipp.
Meteorological ingest processing package
2014-06-20 09:33:49 +00:00
Kamel Ibn Aziz Derouiche
6d001296d2 Update package 2014-06-20 09:26:26 +00:00
Makoto Fujiwara
fab19eb4a3 libiberty.a is required by simulavr. Move it to more visible PATH from simulavr. 2014-06-20 01:18:06 +00:00
Makoto Fujiwara
1166a284fb In cvs log in 1.31, xml was in the _SUGGESTED_ list, but was NOT in reallity. Correct it 2014-06-20 00:37:06 +00:00
Thomas Klausner
93fd9e3f75 + hitori-0.4.4. 2014-06-19 17:54:49 +00:00
Niclas Rosenvik
8a7e1d4908 Changed so that docs are installed in docdir as the pkgsrc docs want it.
Bumping pkgrevisions.
2014-06-19 15:00:36 +00:00
Filip Hajny
0ec5f6f3b4 Fix INSTALLATION_DIRS with regard to SMF support files 2014-06-19 11:23:17 +00:00
Filip Hajny
50bf0e8ddc Fix INSTALLATION_DIRS with regard to SMF support files. 2014-06-19 11:22:34 +00:00
Filip Hajny
8ea044ea8b Fix SCons prefix arg. 2014-06-19 11:17:24 +00:00
Filip Hajny
b095be0f1c apache2 was retired, remove support. 2014-06-19 11:13:15 +00:00
Greg Schenzel
e2dc552cb1 LICENSE added. 2014-06-18 21:47:56 +00:00
Greg Schenzel
5d949005bf Updated from 1.4 to 1.7 and set current MASTER_SITE and HOMEPAGE. 2014-06-18 21:01:42 +00:00
Niclas Rosenvik
01bd60c401 * Added buildlink3.mk
* Removed files/configure.ac and used dos2unix and patching instead.
* Added TODO
2014-06-18 14:08:01 +00:00
Makoto Fujiwara
b45c38fe6f Move the assignment after .include "../../wip/mk/git-package.mk". 2014-06-18 09:45:35 +00:00
Makoto Fujiwara
261ddd719a (1) copy cross/avr-libc (as it is)
(2) compile with wip/avr-gcc (4.8.3) and cross/avr-binutils(2.24)
As a result, several files are added, see diff on PLIST, thanks.
2014-06-18 06:30:42 +00:00
Makoto Fujiwara
e32438271f Update avr-gcc 4.7.3 to 4.8.3
- libiberty.a will be installed as
    lib/gcc/avr/${PKGVERSION}/libiberty.a
  (previous 4.5.3, and 4.7.3 did not have the one).
  and it is moved from lib/libiberty.a to above to avoid confilct to
  other cross and native tools.

From grepping 'avr' from NEWS file:
---------------------------------
   On AVR, the configure option --with-avrlibc supported since GCC 4.7.2
   is turned on per default for all non-RTEMS configurations. This option
   arranges for a better integration of [3]AVR Libc with avr-gcc. For
   technical details, see [4]PR54461. To turn off the option in non-RTEMS
   configurations, use --with-avrlibc=no. If the compiler is configured
   for RTEMS, the option is always turned off.

     * Support has been added for the AVR-specific configure option
       --with-avrlibc=yes in order to arrange for better integration of
       [3]AVR-Libc. This configure option is supported in avr-gcc 4.7.2
       and newer and will only take effect in non-RTEMS configurations. If
       avr-gcc is configured for RTEMS, the option will be ignored which
       is the same as specifying --with-avrlibc=no. See [4]PR54461 for
       more technical details.

   3. http://www.nongnu.org/avr-libc/
   4. http://gcc.gnu.org/PR54461

#include <avr/io.h> /* Port Definitions from AVR-LibC */

     * [297]14064 [avr-elf] -fdata-sections triggers ICE
     * [302]16884 [avr-elf] [fweb related] bug while initializing
2014-06-18 05:08:59 +00:00
Makoto Fujiwara
b436c321da (Makefile)
- Add post-install: target. Files under examples/python weren't installed
   as a default.
 - Add disabled (with ## ) lines for SUBST. Those are trace of trial
   to add *.elf in example to be installed. (See TODO for the note).
 -  use wip/avr-gcc (4.8.3 to be committed later)

(PLIST)
 +include/simulavr/*.hpp
 -share/doc/simulavr/examples/python/*.elf

(patches deleted)
 - patch-bootstrap
   patch-src_Makefile.am
   patch-Makefile.am

(patch-configure.ac)
 - Drop the chunk for automake related problem
2014-06-18 02:21:52 +00:00
Makoto Fujiwara
1e78eebdb0 - Swap patch for src/image.c by the one proposed by Eli Zaretskii
- Add patch for lisp/term/w32-win.el as above
 Ref:
http://emacs.1067599.n5.nabble.com/bug-17790-build-failure-with-giflib-5-1-0-td324636.html
2014-06-17 23:02:35 +00:00
Makoto Fujiwara
233b518df1 tqsl-2.0.2RC4 to 2.0.2RC5 change:
----------
This release fixes a pair of related defects that have been there
since TQSL 1.x

When you create a station location, you associate it with a callsign
certificate. When you sign a log, you select a location for signing,
which then uses the callsign to select the right callsign certificate.

The problems happen when you do unexpected things with those
certificates.

If you create a station location for K1MU, then delete all of the
certificates for K1MU, then signing a log would cause an "Invalid
Argument" error. TQSL has been corrected to now display an error that
there are no valid callsign certificates.

Similarly, if you create a station location and then let the
associated callsign certificate to expire, trying to sign using that
location would also give an unhelpful "Invalid Argument" message.

When there were no matching certificates, displaying the properties of
a station location would display an incorrect callsign.

These defects have been corrected in RC5 so that useful error messages
are displayed for these cases.
2014-06-17 22:41:18 +00:00
Kamel Ibn Aziz Derouiche
6ae76481a7 Import py27-chompack-2.0.0 as wip/py-chompack.
Library for chordal matrix computations
2014-06-17 17:54:14 +00:00
Makoto Fujiwara
3444c588d0 Modify GIFLIB New API patch to be conditional. Ref: bug#17790 on emacs-bugs 2014-06-17 01:53:00 +00:00
Thomas Klausner
346c680175 Bump version, following upstream. 2014-06-16 10:22:51 +00:00
Kamel Ibn Aziz Derouiche
86daae37ac Update component to 1.1.7
update python installer strategy
2014-06-16 00:22:39 +00:00
Blue Rats
8e0903aa87 Delicious, fresh sipwitch - you must eat!
Changes from 1.9.1 to 1.9.2
- namespace usage cleanup
- make sure we can relocate systemd unitdir...
- removed old config support
2014-06-15 23:13:19 +00:00
Makoto Fujiwara
9c5fa6ef34 Make it empty, the message is used for pkgsrc proper commit 2014-06-15 23:02:50 +00:00
Makoto Fujiwara
ccf37ed414 Prepare 2.23.2 to 2.24 Update. 2014-06-15 14:59:31 +00:00
Makoto Fujiwara
7f4dc8d042 -DISTNAME= mu-cite-201202272330
+DISTNAME=      mu-cite-201406091013
-------
 2014-06-09  Katsumi Yamaoka  <yamaoka@jpl.org>
  * mu-register.el (mu-cite-get-no-prefix-register-verbose-method):
    New function.
    (mu-cite-get-prefix-register-verbose-method): Work for it.

  * mu-cite.el (mu-cite-default-methods-alist):
    Add a new method `no-prefix-register-verbose'.
     (mu-cite-original): Register a name before generating top cite form.
     (fill-column-for-fill-cited-region): Don't use default-fill-column.
     (string-compare-from-top): Replace sref with aref.
2014-06-15 13:29:21 +00:00
Niclas Rosenvik
5c165ef669 +libpgf 2014-06-15 10:29:32 +00:00
Niclas Rosenvik
41ee85259e Added libpgf to pkgsrc-wip.
LibPGF is a library for encoding and decoding the progressive graphics
file (PGF) format. PGF is is based on discrete, fast wavelet transform
with progressive coding features and has both lossy and lossless
compression.
2014-06-15 10:25:39 +00:00
Makoto Fujiwara
0b08a6f0e8 It seems following problem with MAKE_JOBS_SAFE related problem,
disable it for interim fix:
  Creating /WRKOBJDIR/wip/emacs-current/work/emacs/info-dir.25076...
  ../../info/efaq-w32.info: No such file or directory
  ../../info/ccmode.info: No such file or directory
  Makefile:182: recipe for target '../../info/efaq-w32.info' failed
  gmake[3]: *** [../../info/efaq-w32.info] Error 1
  Makefile:177: recipe for target '../../info/ccmode.info' failed
  gmake[3]: *** [../../info/ccmode.info] Error 1
2014-06-15 08:35:28 +00:00
Makoto Fujiwara
58419c6a5c Minimize pkglint flags 2014-06-15 08:30:47 +00:00
Makoto Fujiwara
c6ab88a92d giflib-5.1.0 (GIF image format library) changes API. Patche is added.
mage.c:7417:7: error: too few arguments to function 'DGifCloseFile'
  emacs-current/work/.buildlink/include/gif_lib.h:183:9:
  note: declared here
2014-06-15 08:29:46 +00:00
Makoto Fujiwara
ae9324d9a7 Original site replaced DISTFILE with the same name (sorry, actually by myself - mef@) 2014-06-15 08:15:28 +00:00
Makoto Fujiwara
5ca35c6767 Sorry, empty distinfo is necessary for pkglint 2014-06-15 02:09:08 +00:00
Makoto Fujiwara
306b159808 distinfo no longer necessary. 2014-06-15 02:07:47 +00:00
Makoto Fujiwara
b370bad965 Delete patch-configure.in 2014-06-15 02:05:54 +00:00
Makoto Fujiwara
ee25d77f39 patch target for patch-configure does not exist in patch stage.
SUBST framework is used to edit == -> = for configure (after generated) instead
2014-06-15 02:02:05 +00:00
Makoto Fujiwara
b489367863 (some in emulation are moved to obsolete)
-share/emacs/${PKGVERSION}/lisp/emulation/crisp.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/tpu-edt.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/tpu-extras.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/tpu-mapper.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/vi.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/vip.el{c,.gz}
-share/emacs/${PKGVERSION}/lisp/emulation/ws-mode.el{c,.gz}

+share/emacs/${PKGVERSION}/lisp/obsolete/crisp.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/tpu-edt.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/tpu-extras.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/tpu-mapper.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/vi.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/vip.el{c,.gz}
+share/emacs/${PKGVERSION}/lisp/obsolete/ws-mode.el{c,.gz}
2014-06-14 23:36:38 +00:00
Thomas Klausner
944abadbeb Update EGG_NAME for upstream changes. 2014-06-14 18:55:49 +00:00