21 lines
687 B
Plaintext
21 lines
687 B
Plaintext
# NanoStat
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Calculate various statistics from a long read sequencing dataset in
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fastq, bam or albacore sequencing summary format.
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#### Examples
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NanoStat --fastq reads.fastq.gz --outdir statreports
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NanoStat --summary sequencing_summary1.txt sequencing_summary2.txt \
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sequencing_summary3.txt --readtype 1D2
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NanoStat --bam alignment.bam alignment2.bam
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I welcome all suggestions, bug reports, feature requests and
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contributions. Please leave an issue
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(https://github.com/wdecoster/nanostat/issues) or open a pull request.
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If you use this tool, please consider citing our publication:
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https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.
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