43 lines
1.3 KiB
Makefile
43 lines
1.3 KiB
Makefile
# $NetBSD$
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GITHUB_PROJECT= NECAT
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GITHUB_TAG= refs/tags/v0.0.1_update20200803
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DISTNAME= v0.0.1_update20200803
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PKGNAME= ${GITHUB_PROJECT:tl}-${DISTNAME:S,^v,,:S,_update,.,}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=xiaochuanle/}
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DIST_SUBDIR= ${GITHUB_PROJECT}
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MAINTAINER= pkgsrc-users@NetBSD.org
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HOMEPAGE= https://github.com/xiaochuanle/NECAT/
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COMMENT= Error correction and de-novo assembler Nanopore reads
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#LICENSE= # TODO: (see mk/license.mk)
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WRKSRC= ${WRKDIR}/NECAT-0.0.1_update20200803/src
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USE_LANGUAGES= c c++
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USE_TOOLS+= gmake pax perl:run
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REPLACE_PERL= pipeline/necat.pl
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REPLACE_SH+= scripts/oc2asmpm.sh
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REPLACE_SH+= scripts/oc2cmd.sh
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REPLACE_SH+= scripts/oc2cns.sh
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REPLACE_SH+= scripts/oc2cns_iter.sh
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REPLACE_SH+= scripts/oc2ctgpm.sh
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REPLACE_SH+= scripts/oc2trim.sh
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REPLACE_SH+= scripts/oc2trim_bases.sh
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REPLACE_SH+= scripts/ontsa.sh
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INSTALLATION_DIRS+= bin
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do-install:
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cd ${WRKSRC}/../${OPSYS}-${MACHINE_ARCH}/bin && ${PAX} -rw . ${DESTDIR}${PREFIX}/bin
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${CHMOD} a-x ${DESTDIR}${PREFIX}/bin/refmap.sh
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${CHMOD} a-x ${DESTDIR}${PREFIX}/bin/run_ctgpm.sh
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# ${RM} -r ${DESTDIR}${PREFIX}/bin/Plgd
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${RM} -r ${DESTDIR}${PREFIX}/bin/trim_bases_accurate
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${RM} -r ${DESTDIR}${PREFIX}/bin/trim_bases_accurate0
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${RM} ${DESTDIR}${PREFIX}/bin/test.sh
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.include "../../mk/bsd.pkg.mk"
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