33 lines
959 B
Makefile
33 lines
959 B
Makefile
# $NetBSD$
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#
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DISTNAME= rna-seq-1.2.3
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CATEGORIES= biology meta-pkgs
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MASTER_SITES= # empty
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OWNER= bacon@NetBSD.org
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COMMENT= Core tools needed for RNA-Seq analysis
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DEPENDS+= sra-tools>0:../../wip/sra-tools
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DEPENDS+= fastq-trim>0:../../wip/fastq-trim
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DEPENDS+= fastqc>0:../../biology/fastqc
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DEPENDS+= biolibc-tools>0:../../wip/biolibc-tools
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DEPENDS+= gffread>0:../../biology/gffread
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DEPENDS+= kallisto>0:../../biology/kallisto
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DEPENDS+= hisat2>0:../../biology/hisat2
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DEPENDS+= rna-star>0:../../wip/rna-star
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DEPENDS+= samtools>0:../../biology/samtools
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DEPENDS+= igv>0:../../biology/igv
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DEPENDS+= fasda>0:../../wip/fasda
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DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../wip/py-multiqc
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DEPENDS+= webbrowser>0:../../wip/webbrowser
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DEPENDS+= curl>0:../../www/curl
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DEPENDS+= lz4>0:../../archivers/lz4
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DEPENDS+= xz>0:../../archivers/xz
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DEPENDS+= zstd>0:../../archivers/zstd
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META_PACKAGE= yes
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.include "../../lang/python/application.mk"
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.include "../../mk/bsd.pkg.mk"
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