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26bc684fd2
pkgsrc-wip
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glimmerm
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David
3cc7de8d7e
white space clean up on line 17
2005-04-19 22:48:10 +00:00
..
patches
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
DESCR
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
distinfo
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
Makefile
white space clean up on line 17
2005-04-19 22:48:10 +00:00
NOTES
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
PLIST
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00