pkgsrc-wip/gromacs/PLIST
Aleksej Saushev 557560dcf8 Add X support (optional, enabled by default),
reuse GSL and libxml2.
2010-01-12 13:51:21 +00:00

684 lines
19 KiB
Text

@comment $NetBSD: PLIST,v 1.6 2010/01/12 13:51:21 asau Exp $
bin/GMXRC
bin/GMXRC.bash
bin/GMXRC.csh
bin/GMXRC.zsh
bin/anadock
bin/completion.bash
bin/completion.csh
bin/completion.zsh
bin/demux.pl
bin/do_dssp
bin/editconf
bin/eneconv
bin/g_anaeig
bin/g_analyze
bin/g_angle
bin/g_bond
bin/g_bundle
bin/g_chi
bin/g_cluster
bin/g_clustsize
bin/g_confrms
bin/g_covar
bin/g_current
bin/g_density
bin/g_densmap
bin/g_dielectric
bin/g_dih
bin/g_dipoles
bin/g_disre
bin/g_dist
bin/g_dyndom
bin/g_enemat
bin/g_energy
bin/g_filter
bin/g_gyrate
bin/g_h2order
bin/g_hbond
bin/g_helix
bin/g_helixorient
bin/g_kinetics
bin/g_lie
bin/g_mdmat
bin/g_mindist
bin/g_morph
bin/g_msd
bin/g_nmeig
bin/g_nmens
bin/g_nmtraj
bin/g_order
bin/g_polystat
bin/g_potential
bin/g_principal
bin/g_rama
bin/g_rdf
bin/g_rms
bin/g_rmsdist
bin/g_rmsf
bin/g_rotacf
bin/g_saltbr
bin/g_sas
bin/g_sdf
bin/g_sgangle
bin/g_sham
bin/g_sorient
bin/g_spatial
bin/g_spol
bin/g_tcaf
bin/g_traj
bin/g_vanhove
bin/g_velacc
bin/g_wham
bin/genbox
bin/genconf
bin/genion
bin/genrestr
bin/gmxcheck
bin/gmxdump
bin/grompp
${PLIST.x11}bin/highway
bin/luck
bin/make_edi
bin/make_ndx
bin/mdrun
bin/mk_angndx
${PLIST.x11}bin/ngmx
bin/pdb2gmx
bin/protonate
bin/sigeps
bin/tpbconv
bin/trjcat
bin/trjconv
bin/trjorder
bin/wheel
bin/x2top
bin/xplor2gmx.pl
bin/xpm2ps
${PLIST.x11}bin/xrama
include/gromacs/3dview.h
include/gromacs/assert.h
include/gromacs/atomprop.h
include/gromacs/bondf.h
include/gromacs/calcgrid.h
include/gromacs/calch.h
include/gromacs/calcmu.h
include/gromacs/checkpoint.h
include/gromacs/confio.h
include/gromacs/constr.h
include/gromacs/copyrite.h
include/gromacs/coulomb.h
include/gromacs/dihre.h
include/gromacs/disre.h
include/gromacs/do_fit.h
include/gromacs/domdec.h
include/gromacs/domdec_network.h
include/gromacs/ebin.h
include/gromacs/edsam.h
include/gromacs/enxio.h
include/gromacs/ffscanf.h
include/gromacs/fftgrid.h
include/gromacs/filenm.h
include/gromacs/force.h
include/gromacs/futil.h
include/gromacs/gbutil.h
include/gromacs/gmx_ana.h
include/gromacs/gmx_arpack.h
include/gromacs/gmx_blas.h
include/gromacs/gmx_cyclecounter.h
include/gromacs/gmx_fatal.h
include/gromacs/gmx_fft.h
include/gromacs/gmx_lapack.h
include/gromacs/gmx_parallel_3dfft.h
include/gromacs/gmx_random.h
include/gromacs/gmx_system_xdr.h
include/gromacs/gmx_thread.h
include/gromacs/gmx_wallcycle.h
include/gromacs/gmxcomplex.h
include/gromacs/gmxfio.h
include/gromacs/gpp_atomtype.h
include/gromacs/gpp_nextnb.h
include/gromacs/grompp.h
include/gromacs/gstat.h
include/gromacs/index.h
include/gromacs/invblock.h
include/gromacs/macros.h
include/gromacs/magic.h
include/gromacs/main.h
include/gromacs/maths.h
include/gromacs/matio.h
include/gromacs/mdatoms.h
include/gromacs/mdebin.h
include/gromacs/mdrun.h
include/gromacs/mpelogging.h
include/gromacs/mshift.h
include/gromacs/mtop_util.h
include/gromacs/mtxio.h
include/gromacs/mvdata.h
include/gromacs/names.h
include/gromacs/network.h
include/gromacs/nonbonded.h
include/gromacs/nrama.h
include/gromacs/nrjac.h
include/gromacs/nrnb.h
include/gromacs/ns.h
include/gromacs/nsgrid.h
include/gromacs/orires.h
include/gromacs/partdec.h
include/gromacs/pbc.h
include/gromacs/pdbio.h
include/gromacs/pdebug.h
include/gromacs/perf_est.h
include/gromacs/physics.h
include/gromacs/pme.h
include/gromacs/pppm.h
include/gromacs/princ.h
include/gromacs/pull.h
include/gromacs/qmmm.h
include/gromacs/random.h
include/gromacs/rbin.h
include/gromacs/rdgroup.h
include/gromacs/readcomp.h
include/gromacs/readinp.h
include/gromacs/reorder.h
include/gromacs/rmpbc.h
include/gromacs/shellfc.h
include/gromacs/shift.h
include/gromacs/smalloc.h
include/gromacs/sortwater.h
include/gromacs/sparsematrix.h
include/gromacs/split.h
include/gromacs/splitter.h
include/gromacs/statusio.h
include/gromacs/statutil.h
include/gromacs/strdb.h
include/gromacs/string2.h
include/gromacs/struc2.h
include/gromacs/symtab.h
include/gromacs/sysstuff.h
include/gromacs/tags.h
include/gromacs/tgroup.h
include/gromacs/topsort.h
include/gromacs/tpxio.h
include/gromacs/transfer.h
include/gromacs/trnio.h
include/gromacs/txtdump.h
include/gromacs/typedefs.h
include/gromacs/types/atoms.h
include/gromacs/types/block.h
include/gromacs/types/commrec.h
include/gromacs/types/constr.h
include/gromacs/types/energy.h
include/gromacs/types/enums.h
include/gromacs/types/fcdata.h
include/gromacs/types/filenm.h
include/gromacs/types/forcerec.h
include/gromacs/types/graph.h
include/gromacs/types/group.h
include/gromacs/types/idef.h
include/gromacs/types/ifunc.h
include/gromacs/types/inputrec.h
include/gromacs/types/ishift.h
include/gromacs/types/matrix.h
include/gromacs/types/mdatom.h
include/gromacs/types/nblist.h
include/gromacs/types/nbslist.h
include/gromacs/types/nrnb.h
include/gromacs/types/ns.h
include/gromacs/types/nsgrid.h
include/gromacs/types/pbc.h
include/gromacs/types/qmmmrec.h
include/gromacs/types/shellfc.h
include/gromacs/types/simple.h
include/gromacs/types/state.h
include/gromacs/types/symtab.h
include/gromacs/types/topology.h
include/gromacs/types/trx.h
include/gromacs/update.h
include/gromacs/utils.h
include/gromacs/vcm.h
include/gromacs/vec.h
include/gromacs/viewit.h
include/gromacs/vsite.h
include/gromacs/wgms.h
include/gromacs/wman.h
include/gromacs/writeps.h
include/gromacs/xdrf.h
include/gromacs/xtcio.h
include/gromacs/xvgr.h
lib/libgmx_d.la
lib/libgmxana_d.la
lib/libmd_d.la
man/man1/anadock.1
man/man1/do_dssp.1
man/man1/editconf.1
man/man1/eneconv.1
man/man1/g_anaeig.1
man/man1/g_analyze.1
man/man1/g_angle.1
man/man1/g_bond.1
man/man1/g_bundle.1
man/man1/g_chi.1
man/man1/g_cluster.1
man/man1/g_clustsize.1
man/man1/g_confrms.1
man/man1/g_covar.1
man/man1/g_current.1
man/man1/g_density.1
man/man1/g_densmap.1
man/man1/g_dielectric.1
man/man1/g_dih.1
man/man1/g_dipoles.1
man/man1/g_disre.1
man/man1/g_dist.1
man/man1/g_dyndom.1
man/man1/g_enemat.1
man/man1/g_energy.1
man/man1/g_filter.1
man/man1/g_gyrate.1
man/man1/g_h2order.1
man/man1/g_hbond.1
man/man1/g_helix.1
man/man1/g_helixorient.1
man/man1/g_kinetics.1
man/man1/g_lie.1
man/man1/g_mdmat.1
man/man1/g_mindist.1
man/man1/g_morph.1
man/man1/g_msd.1
man/man1/g_nmeig.1
man/man1/g_nmens.1
man/man1/g_nmtraj.1
man/man1/g_order.1
man/man1/g_polystat.1
man/man1/g_potential.1
man/man1/g_principal.1
man/man1/g_rama.1
man/man1/g_rdf.1
man/man1/g_rms.1
man/man1/g_rmsdist.1
man/man1/g_rmsf.1
man/man1/g_rotacf.1
man/man1/g_saltbr.1
man/man1/g_sas.1
man/man1/g_sdf.1
man/man1/g_sgangle.1
man/man1/g_sham.1
man/man1/g_sorient.1
man/man1/g_spatial.1
man/man1/g_spol.1
man/man1/g_tcaf.1
man/man1/g_traj.1
man/man1/g_vanhove.1
man/man1/g_velacc.1
man/man1/g_wham.1
man/man1/gen_table.1
man/man1/genbox.1
man/man1/genconf.1
man/man1/genion.1
man/man1/genrestr.1
man/man1/gmxcheck.1
man/man1/gmxdump.1
man/man1/grompp.1
man/man1/highway.1
man/man1/make_edi.1
man/man1/make_ndx.1
man/man1/mdrun.1
man/man1/mk_angndx.1
man/man1/ngmx.1
man/man1/pdb2gmx.1
man/man1/protonate.1
man/man1/sigeps.1
man/man1/tpbconv.1
man/man1/trjcat.1
man/man1/trjconv.1
man/man1/trjorder.1
man/man1/wheel.1
man/man1/x2top.1
man/man1/xpm2ps.1
man/man1/xrama.1
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share/gromacs/html/online/g_chi.html
share/gromacs/html/online/g_cluster.html
share/gromacs/html/online/g_confrms.html
share/gromacs/html/online/g_covar.html
share/gromacs/html/online/g_density.html
share/gromacs/html/online/g_densmap.html
share/gromacs/html/online/g_dielectric.html
share/gromacs/html/online/g_dih.html
share/gromacs/html/online/g_dipoles.html
share/gromacs/html/online/g_disre.html
share/gromacs/html/online/g_dist.html
share/gromacs/html/online/g_dyndom.html
share/gromacs/html/online/g_enemat.html
share/gromacs/html/online/g_energy.html
share/gromacs/html/online/g_gyrate.html
share/gromacs/html/online/g_h2order.html
share/gromacs/html/online/g_hbond.html
share/gromacs/html/online/g_helix.html
share/gromacs/html/online/g_lie.html
share/gromacs/html/online/g_mdmat.html
share/gromacs/html/online/g_mindist.html
share/gromacs/html/online/g_morph.html
share/gromacs/html/online/g_msd.html
share/gromacs/html/online/g_nmeig.html
share/gromacs/html/online/g_nmens.html
share/gromacs/html/online/g_order.html
share/gromacs/html/online/g_potential.html
share/gromacs/html/online/g_rama.html
share/gromacs/html/online/g_rdf.html
share/gromacs/html/online/g_rms.html
share/gromacs/html/online/g_rmsdist.html
share/gromacs/html/online/g_rmsf.html
share/gromacs/html/online/g_rotacf.html
share/gromacs/html/online/g_saltbr.html
share/gromacs/html/online/g_sas.html
share/gromacs/html/online/g_sgangle.html
share/gromacs/html/online/g_sham.html
share/gromacs/html/online/g_sorient.html
share/gromacs/html/online/g_tcaf.html
share/gromacs/html/online/g_traj.html
share/gromacs/html/online/g_velacc.html
share/gromacs/html/online/genbox.html
share/gromacs/html/online/genconf.html
share/gromacs/html/online/genion.html
share/gromacs/html/online/genpr.html
share/gromacs/html/online/getting_started.html
share/gromacs/html/online/gmxcheck.html
share/gromacs/html/online/gmxdemo.html
share/gromacs/html/online/gmxdump.html
share/gromacs/html/online/gro.html
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share/gromacs/html/online/mtx.html
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share/gromacs/html/online/pdb2gmx.html
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share/gromacs/html/online/protunf.html
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share/gromacs/top/ffgmx.atp
share/gromacs/top/ffgmx.ddb
share/gromacs/top/ffgmx.hdb
share/gromacs/top/ffgmx.itp
share/gromacs/top/ffgmx.rtp
share/gromacs/top/ffgmx2-c.tdb
share/gromacs/top/ffgmx2-n.tdb
share/gromacs/top/ffgmx2.atp
share/gromacs/top/ffgmx2.ddb
share/gromacs/top/ffgmx2.hdb
share/gromacs/top/ffgmx2.itp
share/gromacs/top/ffgmx2.rtp
share/gromacs/top/ffgmx2bon.itp
share/gromacs/top/ffgmx2nb.itp
share/gromacs/top/ffgmxbon.itp
share/gromacs/top/ffgmxnb.itp
share/gromacs/top/ffoplsaa-c.tdb
share/gromacs/top/ffoplsaa-n.tdb
share/gromacs/top/ffoplsaa.atp
share/gromacs/top/ffoplsaa.ddb
share/gromacs/top/ffoplsaa.hdb
share/gromacs/top/ffoplsaa.itp
share/gromacs/top/ffoplsaa.n2t
share/gromacs/top/ffoplsaa.rtp
share/gromacs/top/ffoplsaabon.itp
share/gromacs/top/ffoplsaanb.itp
share/gromacs/top/flexspc.itp
share/gromacs/top/flexspce.itp
share/gromacs/top/flexwat-ferguson.itp
share/gromacs/top/gromacs.dtd
share/gromacs/top/gurgle.dat
share/gromacs/top/h2p4o13.itp
share/gromacs/top/h2p8o25.itp
share/gromacs/top/h2po4.itp
share/gromacs/top/ha-shift.dat
share/gromacs/top/highway.dat
share/gromacs/top/ions.itp
share/gromacs/top/links.dat
share/gromacs/top/methanol.itp
share/gromacs/top/phbres.dat
share/gromacs/top/ps.m2p
share/gromacs/top/random.dat
share/gromacs/top/refi_aa.dat
share/gromacs/top/spc.itp
share/gromacs/top/spc216.gro
share/gromacs/top/spce.itp
share/gromacs/top/specbond.dat
share/gromacs/top/ss.map
share/gromacs/top/surface.dat
share/gromacs/top/sw.itp
share/gromacs/top/table6-10.xvg
share/gromacs/top/table6-11.xvg
share/gromacs/top/table6-12.xvg
share/gromacs/top/table6-8.xvg
share/gromacs/top/table6-9.xvg
share/gromacs/top/tfe.itp
share/gromacs/top/tip3p.itp
share/gromacs/top/tip4p.gro
share/gromacs/top/tip4p.itp
share/gromacs/top/tip5p.gro
share/gromacs/top/tip5p.itp
share/gromacs/top/urea+h2o.gro
share/gromacs/top/urea.itp
share/gromacs/top/vdwradii.dat
share/gromacs/top/xlateat.dat
share/gromacs/tutor/gmxdemo/cpeptide.pdb
share/gromacs/tutor/gmxdemo/demo
share/gromacs/tutor/methanol/conf.gro
share/gromacs/tutor/methanol/grompp.mdp
share/gromacs/tutor/methanol/index.ndx
share/gromacs/tutor/methanol/methanol.itp
share/gromacs/tutor/methanol/methanol.pdb
share/gromacs/tutor/methanol/topol.top
share/gromacs/tutor/mixed/conf.gro
share/gromacs/tutor/mixed/grompp.mdp
share/gromacs/tutor/mixed/index.ndx
share/gromacs/tutor/mixed/mixed.pdb
share/gromacs/tutor/mixed/topol.top
share/gromacs/tutor/nmr1/conf.gro
share/gromacs/tutor/nmr1/grompp.mdp
share/gromacs/tutor/nmr1/pep.pdb
share/gromacs/tutor/nmr1/topol.top
share/gromacs/tutor/nmr2/conf.gro
share/gromacs/tutor/nmr2/genconf.gcp
share/gromacs/tutor/nmr2/grompp.mdp
share/gromacs/tutor/nmr2/pep.pdb
share/gromacs/tutor/nmr2/topol.top
share/gromacs/tutor/speptide/em.mdp
share/gromacs/tutor/speptide/full.mdp
share/gromacs/tutor/speptide/pr.mdp
share/gromacs/tutor/speptide/speptide.pdb
share/gromacs/tutor/water/conf.gro
share/gromacs/tutor/water/grompp.mdp
share/gromacs/tutor/water/index.ndx
share/gromacs/tutor/water/spc216.pdb
share/gromacs/tutor/water/topol.top