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pkgsrc-wip/emboss-base/patches/patch-al
David 37470a0872 initial import of patches for emboss
2004-11-11 20:57:21 +00:00

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$NetBSD: patch-al,v 1.1.1.1 2004/11/11 20:57:21 daprice Exp $
--- configure.orig Thu Jul 15 07:54:41 2004
+++ configure Mon Aug 9 11:31:48 2004
@@ -24484,7 +24484,7 @@
- ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/gb/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/wormpep/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
+ ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/gb/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/wormpep/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile Makefile"
cat >confcache <<\_ACEOF
# This file is a shell script that caches the results of configure
# tests run on this system so they can be shared between configure
@@ -25150,40 +25150,40 @@
"doc/programs/Makefile" ) CONFIG_FILES="$CONFIG_FILES doc/programs/Makefile" ;;
"doc/programs/html/Makefile" ) CONFIG_FILES="$CONFIG_FILES doc/programs/html/Makefile" ;;
"doc/programs/text/Makefile" ) CONFIG_FILES="$CONFIG_FILES doc/programs/text/Makefile" ;;
- "jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/Makefile" ;;
- "jemboss/api/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/Makefile" ;;
- "jemboss/api/org/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/Makefile" ;;
- "jemboss/api/org/emboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/gui/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/gui/filetree/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/filetree/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/gui/form/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/form/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/gui/startup/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/startup/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/parser/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/parser/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/parser/acd/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/parser/acd/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/programs/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/programs/Makefile" ;;
- "jemboss/api/org/emboss/jemboss/soap/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/soap/Makefile" ;;
- "jemboss/images/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/images/Makefile" ;;
- "jemboss/lib/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/lib/Makefile" ;;
- "jemboss/lib/axis/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/lib/axis/Makefile" ;;
- "jemboss/org/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/Makefile" ;;
- "jemboss/org/emboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/Makefile" ;;
- "jemboss/org/emboss/jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/Makefile" ;;
- "jemboss/org/emboss/jemboss/gui/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/gui/Makefile" ;;
- "jemboss/org/emboss/jemboss/gui/filetree/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/gui/filetree/Makefile" ;;
- "jemboss/org/emboss/jemboss/gui/form/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/gui/form/Makefile" ;;
- "jemboss/org/emboss/jemboss/gui/startup/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/gui/startup/Makefile" ;;
- "jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile" ;;
- "jemboss/org/emboss/jemboss/parser/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/parser/Makefile" ;;
- "jemboss/org/emboss/jemboss/parser/acd/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/parser/acd/Makefile" ;;
- "jemboss/org/emboss/jemboss/programs/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/programs/Makefile" ;;
- "jemboss/org/emboss/jemboss/server/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/server/Makefile" ;;
- "jemboss/org/emboss/jemboss/soap/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/soap/Makefile" ;;
- "jemboss/org/emboss/jemboss/editor/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/editor/Makefile" ;;
- "jemboss/org/emboss/jemboss/draw/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/jemboss/draw/Makefile" ;;
- "jemboss/resources/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/resources/Makefile" ;;
- "jemboss/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/utils/Makefile" ;;
+ #"jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/Makefile" ;;
+ #"jemboss/api/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/Makefile" ;;
+ #"jemboss/api/org/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/api/org/Makefile" ;;
+ #"jemboss/api/org/emboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/gui/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/gui/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/gui/filetree/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/gui/filetree/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/gui/form/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/gui/form/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile" ) #CONFIG_FILES="$CONFIG_FILES jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/gui/startup/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/gui/startup/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/parser/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/parser/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/parser/acd/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/parser/acd/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/programs/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/programs/Makefile" ;;
+# "jemboss/api/org/emboss/jemboss/soap/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/api/org/emboss/jemboss/soap/Makefile" ;;
+# "jemboss/images/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/images/Makefile" ;;
+# "jemboss/lib/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/lib/Makefile" ;;
+# "jemboss/lib/axis/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/lib/axis/Makefile" ;;
+# "jemboss/org/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/Makefile" ;;
+# "jemboss/org/emboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/org/emboss/Makefile" #;;
+# "jemboss/org/emboss/jemboss/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/Makefile" ;;
+# "jemboss/org/emboss/jemboss/gui/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/gui/Makefile" ;;
+# "jemboss/org/emboss/jemboss/gui/filetree/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/gui/filetree/Makefile" ;;
+# "jemboss/org/emboss/jemboss/gui/form/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/gui/form/Makefile" ;;
+# "jemboss/org/emboss/jemboss/gui/startup/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/gui/startup/Makefile" ;;
+# "jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile" ;;
+# "jemboss/org/emboss/jemboss/parser/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/parser/Makefile" ;;
+# "jemboss/org/emboss/jemboss/parser/acd/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/parser/acd/Makefile" ;;
+# "jemboss/org/emboss/jemboss/programs/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/programs/Makefile" ;;
+# "jemboss/org/emboss/jemboss/server/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/server/Makefile" ;;
+# "jemboss/org/emboss/jemboss/soap/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/soap/Makefile" ;;
+# "jemboss/org/emboss/jemboss/editor/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/editor/Makefile" ;;
+# "jemboss/org/emboss/jemboss/draw/Makefile" ) CONFIG_FILES="$CONFIG_FILES #jemboss/org/emboss/jemboss/draw/Makefile" ;;
+# "jemboss/resources/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/resources/Makefile" ;;
+# "jemboss/utils/Makefile" ) CONFIG_FILES="$CONFIG_FILES jemboss/utils/Makefile" ;;
"Makefile" ) CONFIG_FILES="$CONFIG_FILES Makefile" ;;
"depfiles" ) CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
*) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
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