60 lines
1.6 KiB
Makefile
60 lines
1.6 KiB
Makefile
# $NetBSD: Makefile,v 1.9 2015/01/28 16:21:48 outpaddling Exp $
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###########################################################
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# Generated by fbsd2pkg #
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###########################################################
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###########################################################
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# Unconverted and partially converted FreeBSD port syntax:
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# .if ${ARCH} == i386
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# MAKE_ENV+= POPCNT_CAPABILITY=0
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# .endif
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# .include <bsd.port.post.mk>
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DISTNAME= bowtie-1.0.1
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GITHUB_TAG= v${PKGVERSION_NOREV}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=BenLangmead/}
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MAINTAINER= bacon4000@gmail.com
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COMMENT= Ultrafast, memory-efficient short read aligner
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LICENSE= artistic
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# Pessimistic assumption. Test and change if possible.
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MAKE_JOBS_SAFE= no
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# Just assuming C and C++: Adjust this!
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USE_LANGUAGES= c c++
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USE_TOOLS+= gmake perl:run pax
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REPLACE_PERL= scripts/*.pl
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# Adapt REINPLACE commands to SUBST:
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SUBST_CLASSES+= lock_guard
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SUBST_STAGE.lock_guard= post-patch
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SUBST_FILES.lock_guard= hit.h log.h
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SUBST_SED.lock_guard= -e 's|lock_guard<MUTEX_T>|tthread::lock_guard<MUTEX_T>|g'
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DATADIR= ${PREFIX}/share/bowtie
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AUTO_MKDIRS= yes
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do-install:
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${INSTALL_PROGRAM} \
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${WRKSRC}/bowtie \
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${WRKSRC}/bowtie-build \
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${WRKSRC}/bowtie-inspect \
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${DESTDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} \
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${WRKSRC}/scripts/*.sh \
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${WRKSRC}/scripts/*.pl \
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${DESTDIR}${PREFIX}/bin
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${MKDIR} ${DESTDIR}${DATADIR}
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cd ${WRKSRC} && ${PAX} -wr genomes indexes reads \
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${DESTDIR}${DATADIR}
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cd ${WRKSRC}/doc && ${PAX} -wr * \
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${DESTDIR}${DOCSDIR}
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.include "../../mk/bsd.pkg.mk"
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