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pkgsrc-wip/jemboss-standalone/patches/patch-ak

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$NetBSD: patch-ak,v 1.1.1.1 2004/11/19 19:27:31 daprice Exp $
--- jemboss/utils/install-jemboss-server.sh.orig Sun Jul 11 01:53:03 2004
+++ jemboss/utils/install-jemboss-server.sh Tue Aug 10 12:53:33 2004
@@ -157,12 +157,12 @@
echo
echo "--------------------------------------------------------------"
echo
- echo "Install EMBASSY packages (y,n) [y]?"
- read EMBASSY
+# echo "Install EMBASSY packages (y,n) [y]?"
+# read EMBASSY
- if [ "$EMBASSY" = "" ]; then
+# if [ "$EMBASSY" = "" ]; then
EMBASSY="y"
- fi
+# fi
echo "$EMBASSY" >> $RECORD
@@ -171,37 +171,37 @@
if [ ! -d $EMBOSS_DOWNLOAD/embassy ]; then
mkdir $EMBOSS_DOWNLOAD/embassy
fi
- echo
- echo "To install EMBASSY Packages:"
- echo "(1) Download these from ftp://ftp.uk.embnet.org/pub/EMBOSS/"
- echo "(2) And unpack (gunzip and untar) them in: "
- echo "$EMBOSS_DOWNLOAD/embassy"
- echo "(3) *before* pressing return to continue!"
- read BLANK
+# echo
+# echo "To install EMBASSY Packages:"
+# echo "(1) Download these from ftp://ftp.uk.embnet.org/pub/EMBOSS/"
+# echo "(2) And unpack (gunzip and untar) them in: "
+# echo "$EMBOSS_DOWNLOAD/embassy"
+# echo "(3) *before* pressing return to continue!"
+# read BLANK
cd $EMBOSS_DOWNLOAD/embassy
- echo
- echo "Install all packages that are downloaded in"
- echo "$EMBOSS_DOWNLOAD/embassy "
- echo "(if no prompts will be given for each package to install)"
- echo "(y,n) [y]?"
+ # echo
+ # echo "Install all packages that are downloaded in"
+ # echo "$EMBOSS_DOWNLOAD/embassy "
+ # echo "(if no prompts will be given for each package to install)"
+ # echo "(y,n) [y]?"
- read ALL
- if [ "$ALL" = "" ]; then
+ # read ALL
+ # if [ "$ALL" = "" ]; then
ALL="y"
- fi
+ # fi
for dir in *
do
if [ $ALL = "y" ]; then
INST="y"
else
- echo "Install $dir (y,n) [y]?"
- read INST
- if [ "$INST" = "" ]; then
+# echo "Install $dir (y,n) [y]?"
+# read INST
+# if [ "$INST" = "" ]; then
INST="y"
- fi
+# fi
fi
if [ $INST = "y" ]; then
@@ -376,7 +376,7 @@
JEMBOSS_PROPERTIES=$EMBOSS_INSTALL/share/EMBOSS/jemboss/resources/jemboss.properties
- mv $JEMBOSS_PROPERTIES $JEMBOSS_PROPERTIES.orig
+ mv $JEMBOSS_PROPERTIES $JEMBOSS_PROPERTIES.ORIGINAL
touch $JEMBOSS_PROPERTIES
if [ $AUTH = "y" ]; then
@@ -408,12 +408,12 @@
# >> $JEMBOSS_PROPERTIES
echo "acdDirToParse=$EMBOSS_INSTALL/share/EMBOSS/acd/" >> $JEMBOSS_PROPERTIES
echo "embossURL=$EMBOSS_URL" >> $JEMBOSS_PROPERTIES
- cp $JEMBOSS_PROPERTIES $JEMBOSS_PROPERTIES.bak
+# cp $JEMBOSS_PROPERTIES $JEMBOSS_PROPERTIES.bak
- echo
- echo "Changed $EMBOSS_INSTALL/share/EMBOSS/jemboss/resources/jemboss.properties"
- echo "to reflect this installation (original in jemboss.properties.orig)"
- echo
+# echo
+# echo "Changed $EMBOSS_INSTALL/share/EMBOSS/jemboss/resources/jemboss.properties"
+# echo "to reflect this installation (original in jemboss.properties.orig)"
+# echo
}
@@ -665,39 +665,39 @@
}
-clear
-echo
-echo "--------------------------------------------------------------"
-echo " EMBOSS and Jemboss Server installation script"
-echo "--------------------------------------------------------------"
-echo " "
-echo "Note: any default values are given in square brackets []. "
-echo " "
-echo "There are two types of installation see details at: "
-echo "http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Jemboss/install/setup.html"
-echo " "
-echo "(1) CLIENT-SERVER"
-echo "(2) STANDALONE"
-echo "Enter type of installation [1] :"
-read INSTALL_TYPE
+#clear
+#echo
+#echo "--------------------------------------------------------------"
+#echo " EMBOSS and Jemboss Server installation script"
+#echo "--------------------------------------------------------------"
+#echo " "
+#echo "Note: any default values are given in square brackets []. "
+#echo " "
+#echo "There are two types of installation see details at: "
+#echo "http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Jemboss/install/setup.html"
+#echo " "
+#echo "(1) CLIENT-SERVER"
+#echo "(2) STANDALONE"
+#echo "Enter type of installation [1] :"
+#read INSTALL_TYPE
-if (test "$INSTALL_TYPE" != "1") && (test "$INSTALL_TYPE" != "2"); then
- INSTALL_TYPE="1"
-fi
-clear
+#if (test "$INSTALL_TYPE" != "1") && (test "$INSTALL_TYPE" != "2"); then
+ INSTALL_TYPE="2"
+#fi
+#clear
-echo
-echo "--------------------------------------------------------------"
-echo " EMBOSS and Jemboss Server installation script"
-echo "--------------------------------------------------------------"
-echo
-echo "*** This script needs to be run with permissions to be able"
-echo "*** to install EMBOSS in the required directories. This may"
-echo "*** be best done as root or as a tomcat user."
-echo
-echo "Before running this script you should download the latest:"
-echo
-echo "(1) EMBOSS release (contains Jemboss) ftp://ftp.uk.embnet.org/pub/EMBOSS/"
+#echo
+#echo "--------------------------------------------------------------"
+#echo " EMBOSS and Jemboss Server installation script"
+#echo "--------------------------------------------------------------"
+#echo
+#echo "*** This script needs to be run with permissions to be able"
+#echo "*** to install EMBOSS in the required directories. This may"
+#echo "*** be best done as root or as a tomcat user."
+#echo
+#echo "Before running this script you should download the latest:"
+#echo
+#echo "(1) EMBOSS release (contains Jemboss) ftp://ftp.uk.embnet.org/pub/EMBOSS/"
if [ $INSTALL_TYPE = "1" ]; then
@@ -705,13 +705,13 @@
echo "(3) Apache AXIS (SOAP) release http://xml.apache.org/axis/"
fi
-echo
-echo "Has the above been downloaded (y/n)? "
-read DOWNLOADED
+#echo
+#echo "Has the above been downloaded (y/n)? "
+#read DOWNLOADED
-if (test "$DOWNLOADED" != "y") && (test "$DOWNLOADED" != "Y"); then
- exit 1
-fi
+#if (test "$DOWNLOADED" != "y") && (test "$DOWNLOADED" != "Y"); then
+# exit 1
+#fi
RECORD="install.record"
@@ -754,22 +754,22 @@
esac
-echo
-echo "Select the platform that your Jemboss server will be"
-echo "run on from 1-8 [$PLATTMP]:"
-echo "(1) linux"
-echo "(2) aix"
-echo "(3) irix"
-echo "(4) hp-ux"
-echo "(5) solaris"
-echo "(6) macosX"
-echo "(7) OSF"
-echo "(8) FreeBSD"
-read PLAT
+#echo
+#echo "Select the platform that your Jemboss server will be"
+#echo "run on from 1-8 [$PLATTMP]:"
+#echo "(1) linux"
+#echo "(2) aix"
+#echo "(3) irix"
+#echo "(4) hp-ux"
+#echo "(5) solaris"
+#echo "(6) macosX"
+#echo "(7) OSF"
+#echo "(8) FreeBSD"
+#read PLAT
-if [ "$PLAT" = "" ]; then
+#if [ "$PLAT" = "" ]; then
PLAT=$PLATTMP
-fi
+#fi
echo "$PLAT" >> $RECORD
@@ -869,22 +869,22 @@
# JAVA_HOME
#
getJavaHomePath
-JAVA_HOME=$JAVA_HOME_TMP
-if [ "$JAVA_HOME" != "0" ]; then
- echo "Enter java (1.3 or above) location [$JAVA_HOME_TMP]: "
- read JAVA_HOME
-
- if [ "$JAVA_HOME" = "" ]; then
- JAVA_HOME=$JAVA_HOME_TMP
- fi
-fi
+JAVA_HOME=@PKG_JAVA_HOME@
+#if [ "$JAVA_HOME" != "0" ]; then
+# echo "Enter java (1.3 or above) location [$JAVA_HOME_TMP]: "
+# read JAVA_HOME
+
+# if [ "$JAVA_HOME" = "" ]; then
+# JAVA_HOME=$JAVA_HOME_TMP
+# fi
+#fi
-while [ ! -f "$JAVA_HOME/bin/javac" ]
-do
- echo "Enter java (1.3 or above) location (/usr/java/jdk1.3.1/): "
- read JAVA_HOME
-done
-echo
+#while [ ! -f "$JAVA_HOME/bin/javac" ]
+#do
+# echo "Enter java (1.3 or above) location (/usr/java/jdk1.3.1/): "
+# read JAVA_HOME
+#done
+#echo
echo "$JAVA_HOME" >> $RECORD
#
@@ -901,29 +901,29 @@
JAVA_INCLUDE=$JAVA_HOME/include/
JAVA_INCLUDE_OS=$JAVA_INCLUDE
if [ -d $JAVA_INCLUDE/linux ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/linux
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}linux
elif [ -d $JAVA_INCLUDE/solaris ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/solaris
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}solaris
elif [ -d $JAVA_INCLUDE/irix ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/irix
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}irix
elif [ -d $JAVA_INCLUDE/hp-ux ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/hp-ux
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}hp-ux
elif [ -d $JAVA_INCLUDE/alpha ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/alpha
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}alpha
elif [ -d $JAVA_INCLUDE/freebsd ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/freebsd
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}freebsd
elif [ -d $JAVA_INCLUDE ]; then
JAVA_INCLUDE_OS=${JAVA_INCLUDE}
else
- echo "Enter java include/Header directory location (containing jni.h)? "
+# echo "Enter java include/Header directory location (containing jni.h)? "
read JAVA_INCLUDE
JAVA_INCLUDE_OS=$JAVA_INCLUDE
if [ -d $JAVA_INCLUDE/linux ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/linux
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}linux
elif [ -d $JAVA_INCLUDE/solaris ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/solaris
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}solaris
elif [ -d $JAVA_INCLUDE/irix ]; then
- JAVA_INCLUDE_OS=${JAVA_INCLUDE}/irix
+ JAVA_INCLUDE_OS=${JAVA_INCLUDE}irix
elif [ -d $JAVA_INCLUDE ]; then
JAVA_INCLUDE_OS=${JAVA_INCLUDE}
else
@@ -941,38 +941,38 @@
EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
-echo "Enter EMBOSS download directory"
-echo "[$EMBOSS_DOWNLOAD_TMP]: "
-read EMBOSS_DOWNLOAD
+#echo "Enter EMBOSS download directory"
+#echo "[$EMBOSS_DOWNLOAD_TMP]: "
+#read EMBOSS_DOWNLOAD
-if [ "$EMBOSS_DOWNLOAD" = "" ]; then
+#if [ "$EMBOSS_DOWNLOAD" = "" ]; then
EMBOSS_DOWNLOAD=$EMBOSS_DOWNLOAD_TMP
-fi
+#fi
-while [ ! -d "$EMBOSS_DOWNLOAD/ajax" ]
-do
- echo "Enter EMBOSS download directory (e.g. /usr/emboss/EMBOSS-2.x.x): "
- read EMBOSS_DOWNLOAD
-done
-echo
+#while [ ! -d "$EMBOSS_DOWNLOAD/ajax" ]
+#do
+# echo "Enter EMBOSS download directory (e.g. /usr/emboss/EMBOSS-2.x.x): "
+# read EMBOSS_DOWNLOAD
+#done
+#echo
echo "$EMBOSS_DOWNLOAD" >> $RECORD
-echo "Enter where EMBOSS should be installed [/usr/local/emboss]: "
-read EMBOSS_INSTALL
+#echo "Enter where EMBOSS should be installed [/usr/local/emboss]: "
+#read EMBOSS_INSTALL
-if [ "$EMBOSS_INSTALL" = "" ]; then
- EMBOSS_INSTALL=/usr/local/emboss
-fi
+#if [ "$EMBOSS_INSTALL" = "" ]; then
+ EMBOSS_INSTALL=@PREFIX@
+#fi
-if [ -d "$EMBOSS_INSTALL/share/EMBOSS/jemboss" ]; then
- echo
- echo "Jemboss has already be installed to: "
- echo "$EMBOSS_INSTALL/share/EMBOSS/jemboss "
- echo "It is recommended this is removed before continuing."
- echo "To continue press return."
- read BLANK
-fi
-echo
+#if [ -d "$EMBOSS_INSTALL/share/EMBOSS/jemboss" ]; then
+# echo
+# echo "Jemboss has already be installed to: "
+# echo "$EMBOSS_INSTALL/share/EMBOSS/jemboss "
+# echo "It is recommended this is removed before continuing."
+# echo "To continue press return."
+# read BLANK
+#fi
+#echo
echo "$EMBOSS_INSTALL" >> $RECORD
if [ $INSTALL_TYPE = "1" ]; then
@@ -1039,21 +1039,21 @@
CC="$CC -DTOMCAT_UID=$UUID "; export CC
- echo
- echo "Unix Authentication Method, see:"
- echo "http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Jemboss/install/authentication.html"
- echo
- echo "(1) shadow (3) PAM (5) HP-UX shadow"
- echo "(2) no shadow (4) AIX shadow (6) Re-entrant shadow"
- echo "(7) Re-entrant no shadow"
- echo
- echo "Type of unix password method being used "
- echo "(select 1, 2, 3, 4, 5, 6 or 7 )[$AUTH_TYPE_TMP]"
- read AUTH_TYPE
+# echo
+# echo "Unix Authentication Method, see:"
+# echo "http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Jemboss/install/authentication.html"
+# echo
+# echo "(1) shadow (3) PAM (5) HP-UX shadow"
+# echo "(2) no shadow (4) AIX shadow (6) Re-entrant shadow"
+# echo "(7) Re-entrant no shadow"
+# echo
+# echo "Type of unix password method being used "
+# echo "(select 1, 2, 3, 4, 5, 6 or 7 )[$AUTH_TYPE_TMP]"
+# read AUTH_TYPE
- if [ "$AUTH_TYPE" = "" ]; then
+# if [ "$AUTH_TYPE" = "" ]; then
AUTH_TYPE="$AUTH_TYPE_TMP"
- fi
+# fi
echo "$AUTH_TYPE" >> $RECORD
@@ -1133,41 +1133,41 @@
USER_CONFIG=""
get_libs $USER_CONFIG
-if [ "$USER_CONFIG" = "" ]; then
- echo
- echo "--------------------------------------------------------------"
- echo
- echo "The libraries for EMBOSS (libpng and gd) do not appear to"
- echo "be in /usr. It may be necessary to use the configuration"
- echo "flag --with-pngdriver to specify their location"
- echo
- echo "For details see the EMBOSS admin guide:"
- echo "http://www.uk.embnet.org/Software/EMBOSS/Doc/Admin_guide/adminguide/"
- echo
- echo "Enter any other EMBOSS configuration options (e.g. --with-pngdriver=pathname)"
- echo "or press return to leave blank:"
- read USER_CONFIG
-elif [ "$USER_CONFIG" = "default" ]; then
- echo
- echo "--------------------------------------------------------------"
- echo
- echo "The libraries for EMBOSS (libpng and gd) appear to be in /usr,"
- echo "if these are the correct libraries then there should be no need"
- echo "to add any configuration options."
- echo
- echo "Enter any other EMBOSS configuration options (e.g. --with-pngdriver=pathname)"
- echo "or press return to leave blank:"
- read USER_CONFIG
-else
- echo "Enter any other EMBOSS configuration options or press return to"
- echo "use default [$USER_CONFIG]:"
- read USER_CONFIG_TMP
- if [ "$USER_CONFIG_TMP" != "" ]; then
+#if [ "$USER_CONFIG" = "" ]; then
+# echo
+# echo "--------------------------------------------------------------"
+# echo
+# echo "The libraries for EMBOSS (libpng and gd) do not appear to"
+# echo "be in /usr. It may be necessary to use the configuration"
+# echo "flag --with-pngdriver to specify their location"
+# echo
+# echo "For details see the EMBOSS admin guide:"
+# echo "http://www.uk.embnet.org/Software/EMBOSS/Doc/Admin_guide/adminguide/"
+# echo
+# echo "Enter any other EMBOSS configuration options (e.g. --with-pngdriver=pathname)"
+# echo "or press return to leave blank:"
+# read USER_CONFIG
+#elif [ "$USER_CONFIG" = "default" ]; then
+# echo
+# echo "--------------------------------------------------------------"
+# echo
+# echo "The libraries for EMBOSS (libpng and gd) appear to be in /usr,"
+# echo "if these are the correct libraries then there should be no need"
+# echo "to add any configuration options."
+# echo
+# echo "Enter any other EMBOSS configuration options (e.g. --with-pngdriver=pathname)"
+# echo "or press return to leave blank:"
+# read USER_CONFIG
+#else
+# echo "Enter any other EMBOSS configuration options or press return to"
+# echo "use default [$USER_CONFIG]:"
+# read USER_CONFIG_TMP
+# if [ "$USER_CONFIG_TMP" != "" ]; then
USER_CONFIG="$USER_CONFIG_TMP"
- fi
-fi
+# fi
+#fi
-check_libs "$USER_CONFIG" $PLATFORM
+#check_libs "$USER_CONFIG" $PLATFORM
echo "$USER_CONFIG" >> $RECORD
#
@@ -1180,30 +1180,30 @@
fi
fi
-echo
-echo " ******** EMBOSS will be configured with this information ******** "
-echo
-echo "./configure --with-java=$JAVA_INCLUDE \\"
-echo " --with-javaos=$JAVA_INCLUDE_OS \\"
-echo " --with-thread=$PLATFORM \\"
-echo " --prefix=$EMBOSS_INSTALL \\"
-echo " $JEMBOSS_SERVER_AUTH $USER_CONFIG"
-echo
-
-WORK_DIR=`pwd`
-cd $EMBOSS_DOWNLOAD
-
-./configure --with-java=$JAVA_INCLUDE \
- --with-javaos=$JAVA_INCLUDE_OS \
- --with-thread=$PLATFORM \
- --prefix=$EMBOSS_INSTALL $JEMBOSS_SERVER_AUTH $USER_CONFIG
+#echo
+#echo " ******** EMBOSS will be configured with this information ******** "
+#echo
+#echo "./configure --with-java=$JAVA_INCLUDE \\"
+#echo " --with-javaos=$JAVA_INCLUDE_OS \\"
+#echo " --with-thread=$PLATFORM \\"
+#echo " --prefix=$EMBOSS_INSTALL \\"
+#echo " $JEMBOSS_SERVER_AUTH $USER_CONFIG"
+#echo
+
+#WORK_DIR=`pwd`
+#cd $EMBOSS_DOWNLOAD
+
+#./configure --with-java=$JAVA_INCLUDE \
+# --with-javaos=$JAVA_INCLUDE_OS \
+# --with-thread=$PLATFORM \
+# --prefix=$EMBOSS_INSTALL $JEMBOSS_SERVER_AUTH $USER_CONFIG
make
-echo
-echo " ******* EMBOSS with Jemboss will be installed in $EMBOSS_INSTALL ******* "
-echo
-sleep 2
+#echo
+#echo " ******* EMBOSS with Jemboss will be installed in $EMBOSS_INSTALL ******* "
+#echo
+#sleep 2
make install
@@ -1211,15 +1211,15 @@
#
# Config EMBASSY
#
-embassy_install $EMBOSS_DOWNLOAD $RECORD $PLATFORM $EMBOSS_INSTALL $USER_CONFIG
+#embassy_install $EMBOSS_DOWNLOAD $RECORD $PLATFORM $EMBOSS_INSTALL $USER_CONFIG
#
#
# Get clustalw and primer3_core path
#
-getClustalWPath
-getPrimerPath
+#getClustalWPath
+#getPrimerPath
#
#
@@ -1280,69 +1280,69 @@
#
#
-rm -f tomstart
+#rm -f tomstart
-echo
-echo "#!/bin/csh " > tomstart
-echo "setenv JAVA_HOME $JAVA_HOME" >> tomstart
+#echo
+#echo "#!/bin/csh " > tomstart
+#echo "setenv JAVA_HOME $JAVA_HOME" >> tomstart
-if [ "$SSL" = "y" ]; then
- echo "setenv JSSE_HOME $JSSE_HOME" >> tomstart
-fi
+#if [ "$SSL" = "y" ]; then
+# echo "setenv JSSE_HOME $JSSE_HOME" >> tomstart
+#fi
-if [ "$AIX" = "y" ]; then
- echo "setenv LIBPATH /usr/lib/threads:/usr/lib:/lib:$EMBOSS_INSTALL/lib" >> tomstart
- cp $EMBOSS_DOWNLOAD/ajax/.libs/libajax.so.0 $EMBOSS_INSTALL/lib
- ln -s $EMBOSS_INSTALL/lib/libajax.so.0 $EMBOSS_INSTALL/lib/libajax.so
-else
- echo "setenv JAVA_OPTS \"-Djava.library.path=$EMBOSS_INSTALL/lib\"" >> tomstart
- echo "setenv LD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstart
-fi
+#if [ "$AIX" = "y" ]; then
+# echo "setenv LIBPATH /usr/lib/threads:/usr/lib:/lib:$EMBOSS_INSTALL/lib" >> tomstart
+# cp $EMBOSS_DOWNLOAD/ajax/.libs/libajax.so.0 $EMBOSS_INSTALL/lib
+# ln -s $EMBOSS_INSTALL/lib/libajax.so.0 $EMBOSS_INSTALL/lib/libajax.so
+#else
+# echo "setenv JAVA_OPTS \"-Djava.library.path=$EMBOSS_INSTALL/lib\"" >> tomstart
+# echo "setenv LD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstart
+#fi
-if [ "$MACOSX" = "y" ]; then
- echo "setenv DYLD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstart
-fi
+#if [ "$MACOSX" = "y" ]; then
+# echo "setenv DYLD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstart
+#fi
-if [ "$PLATFORM" = "hpux" ]; then
- echo "setenv SHLIB_PATH $EMBOSS_INSTALL/lib" >> tomstart
-fi
+#if [ "$PLATFORM" = "hpux" ]; then
+# echo "setenv SHLIB_PATH $EMBOSS_INSTALL/lib" >> tomstart
+#fi
-if [ "$AUTH_TYPE" = "3" ]; then
- if [ -f "/lib/libpam.so" ]; then
- echo "setenv LD_PRELOAD /lib/libpam.so" >> tomstart
- elif [ -f "/usr/lib/libpam.so" ]; then
- echo "setenv LD_PRELOAD /usr/lib/libpam.so" >> tomstart
- else
- echo
- echo "WARNING: don't know what to set LD_PRELOAD to"
- echo "edit LD_PRELOAD in tomstart script!"
- echo "setenv LD_PRELOAD /usr/lib/libpam.so" >> tomstart
- echo
- fi
-fi
+#if [ "$AUTH_TYPE" = "3" ]; then
+# if [ -f "/lib/libpam.so" ]; then
+# echo "setenv LD_PRELOAD /lib/libpam.so" >> tomstart
+# elif [ -f "/usr/lib/libpam.so" ]; then
+# echo "setenv LD_PRELOAD /usr/lib/libpam.so" >> tomstart
+# else
+# echo
+# echo "WARNING: don't know what to set LD_PRELOAD to"
+# echo "edit LD_PRELOAD in tomstart script!"
+# echo "setenv LD_PRELOAD /usr/lib/libpam.so" >> tomstart
+# echo
+# fi
+#fi
-echo 'set path=($path '"$JAVA_HOME/bin)" >> tomstart
-echo "rehash" >> tomstart
-echo "$TOMCAT_ROOT/bin/startup.sh" >> tomstart
+#echo 'set path=($path '"$JAVA_HOME/bin)" >> tomstart
+#echo "rehash" >> tomstart
+#echo "$TOMCAT_ROOT/bin/startup.sh" >> tomstart
-rm -f tomstop
+#rm -f tomstop
-echo
-echo "#!/bin/csh " > tomstop
-echo "setenv JAVA_HOME $JAVA_HOME" >> tomstop
-echo "setenv LD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstop
+#echo
+#echo "#!/bin/csh " > tomstop
+#echo "setenv JAVA_HOME $JAVA_HOME" >> tomstop
+#echo "setenv LD_LIBRARY_PATH $EMBOSS_INSTALL/lib" >> tomstop
#if [ "$AUTH_TYPE" = "3" ]; then
# echo "setenv LD_PRELOAD /lib/libpam.so" >> tomstop
#fi
-echo 'set path=($path '"$JAVA_HOME/bin)" >> tomstop
-echo "rehash" >> tomstop
-echo "$TOMCAT_ROOT/bin/shutdown.sh" >> tomstop
+#echo 'set path=($path '"$JAVA_HOME/bin)" >> tomstop
+#echo "rehash" >> tomstop
+#echo "$TOMCAT_ROOT/bin/shutdown.sh" >> tomstop
-chmod u+x tomstart
-chmod u+x tomstop
+#chmod u+x tomstart
+#chmod u+x tomstop
#
@@ -1360,13 +1360,13 @@
if [ -f "$RUNFILE.bak" ]; then
rm -f $RUNFILE.bak
fi
- sed "s|^#java org|$JAVA_HOME/bin/java org|" $RUNFILE > $RUNFILE.new
- sed "s|^java org.emboss.jemboss.Jemboss &|#java org.emboss.jemboss.Jemboss &|" $RUNFILE.new > $RUNFILE.new1
- sed "s|^#EMBOSS_INSTALL=\(.*\)|EMBOSS_INSTALL=$EMBOSS_INSTALL/lib; export EMBOSS_INSTALL|" $RUNFILE.new1 > $RUNFILE.new2
+# sed "s|^#java org|$JAVA_HOME/bin/java org|" $RUNFILE > $RUNFILE.new
+# sed "s|^java org.emboss.jemboss.Jemboss &|#java org.emboss.jemboss.Jemboss &|" $RUNFILE.new > $RUNFILE.new1
+# sed "s|^#EMBOSS_INSTALL=\(.*\)|EMBOSS_INSTALL=$EMBOSS_INSTALL/lib; export EMBOSS_INSTALL|" $RUNFILE.new1 > $RUNFILE.new2
sed "s|^#LD_LIBRARY_PATH|LD_LIBRARY_PATH|" $RUNFILE.new2 > $RUNFILE.new3
- rm -f $RUNFILE.new $RUNFILE.new1 $RUNFILE.new2
- mv $RUNFILE $RUNFILE.bak1
- mv $RUNFILE.new3 $RUNFILE
+# rm -f $RUNFILE.new $RUNFILE.new1 $RUNFILE.new2
+# mv $RUNFILE $RUNFILE.bak1
+# mv $RUNFILE.new3 $RUNFILE
if [ "$AIX" = "y" ]; then
@@ -1377,11 +1377,11 @@
chmod a+x $RUNFILE
- echo
- echo "To run Jemboss:"
- echo "cd $JEMBOSS"
- echo "./runJemboss.sh"
- echo
+# echo
+# echo "To run Jemboss:"
+# echo "cd $JEMBOSS"
+# echo "./runJemboss.sh"
+# echo
exit 0
else
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