SIMA (Sequential IMage Analysis) is an Open Source package for analysis of
time-series imaging data arising from fluorescence microscopy.
The functionality of this package includes:
correction of motion artifacts
segmentation of imaging fields into regions of interest (ROIs)
extraction of dynamic signals from ROIs
The included ROI Buddy software provides a graphical user interface (GUI)
supporting the following functionality:
manual creation of ROIs
editing of ROIs resulting from automated segmentation
registration of ROIs across separate imaging sessions
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