94 lines
3.6 KiB
Makefile
94 lines
3.6 KiB
Makefile
# $NetBSD: Makefile,v 1.5 2005/10/08 21:56:59 rillig Exp $
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#
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DISTNAME= EMBOSS-2.9.0
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PKGNAME= jemboss-standalone-2.9.0
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/
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MAINTAINER= dprice@cs.nmsu.edu
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HOMEPAGE= http://www.emboss.org/
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COMMENT= Standalone Interface for EMBOSS
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DEPENDS+= emboss-java>=0.0.3:../../wip/emboss-java
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DEPENDS+= jakarta-servletapi-[0-9]*:../../www/jakarta-servletapi
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DEPENDS+= xerces-j>=1.2.0:../../textproc/xerces-j
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DEPENDS+= iasp>=2.1.1:../../www/iasp
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DEPENDS+= apache-ant>=1.5.3.1:../../devel/apache-ant
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DIST_SUBDIR= emboss/emboss-2.9.0
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PKG_DEFAULT_JVM= sun-jdk13
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WRKSRC= ${WRKDIR}/${DISTNAME}
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USE_JAVA= yes
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USE_PKGLOCALEDIR= yes
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USE_LIBTOOL= yes
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LIBTOOL_OVERRIDE= ${WRKSRC}/libtool
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS+= --with-java=${PKG_JAVA_HOME}/include
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CONFIGURE_ARGS+= --with-javaos=${PKG_JAVA_HOME}/include/linux
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CONFIGURE_ARGS+= --with-thread=linux
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#pre-extract:
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# setenv PKG_JAVA_HOME which java pull bin/java off the end?
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post-extract:
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${CP} ${FILESDIR}/jemboss ${WRKSRC}/jemboss/
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pre-configure:
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${SED} -e 's:@PKG_JAVA_HOME@:${PKG_JAVA_HOME}:' \
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-e 's:@PREFIX@:${PREFIX}:' \
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${WRKSRC}/jemboss/utils/install-jemboss-server.sh > \
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${WRKSRC}/jemboss/utils/install-jemboss-server.sh.bak
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${MV} ${WRKSRC}/jemboss/utils/install-jemboss-server.sh.bak \
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${WRKSRC}/jemboss/utils/install-jemboss-server.sh
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${SED} -e 's|@JAVA_CLASSPATH@|${CLASSPATH}|' \
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-e 's|@JAVA@|${PKG_JAVA_HOME}bin|' \
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-e 's|@PREFIX@|${PREFIX}|' \
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${WRKSRC}/jemboss/runJemboss.sh > \
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${WRKSRC}/jemboss/runJemboss.sh.bak
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${SED} -e 's|share\/EMBOSS\/jemboss|share\/EMBOSS|' \
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${WRKSRC}/jemboss/runJemboss.sh.bak > \
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${WRKSRC}/jemboss/runJemboss.sh.bak1
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${MV} ${WRKSRC}/jemboss/runJemboss.sh.bak1 \
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${WRKSRC}/jemboss/runJemboss.sh
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${SED} -e 's|share/EMBOSS/bin|pkg/bin|' \
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-e 's|@PREFIX@|${PREFIX}|' \
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${WRKSRC}/jemboss/resources/jemboss.properties > \
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${WRKSRC}/jemboss/resources/jemboss.properties.bak
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${MV} ${WRKSRC}/jemboss/resources/jemboss.properties.bak \
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${WRKSRC}/jemboss/resources/jemboss.properties
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${SED} -e 's|@JAVAC@|${PKG_JAVA_HOME}bin/javac|' \
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-e 's|@X116@|-Wl,-R${X11BASE}/lib|' \
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${WRKSRC}/jemboss/Makefile.in > ${WRKSRC}/jemboss/Makefile.in.bak
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${SED} -e 's|@EMBOSS_INSTALL@|${PREFIX}/share/EMBOSS/jemboss|' \
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-e 's|javac org|javac -g org|' \
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${WRKSRC}/jemboss/jemboss > \
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${WRKSRC}/jemboss/jemboss.bak
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${MV} ${WRKSRC}/jemboss/jemboss.bak \
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${WRKSRC}/jemboss/jemboss
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${MV} ${WRKSRC}/jemboss/Makefile.in.bak ${WRKSRC}/jemboss/Makefile.in
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${SED} -e 's|@LIB@|-Wl,-R${PREFIX}/lib|' \
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${WRKSRC}/configure > ${WRKSRC}/configure.bak
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${MV} ${WRKSRC}/configure.bak ${WRKSRC}/configure
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${CHMOD} +x ${WRKSRC}/configure
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post-install:
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cd ${WRKSRC}/jemboss/utils && \
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${SH} install-jemboss-server.sh
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${INSTALL_SCRIPT} ${WRKSRC}/jemboss/jemboss ${PREFIX}/bin/jemboss
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# ${MV} ${WRKSRC}/jemboss/lib/axis/axis.jar ${PREFIX}/lib/java/axis.jar
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# ${MV} ${WRKSRC}/jemboss/lib/jsse.jar ${PKG_JAVA_HOME}/lib/jsse.jar
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# ${MV} ${WRKSRC}/jemboss/lib/jalview.jar ${PKG}/share/EMBOSS/jemboss/lib/jalview.jar
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.include "../../wip/emboss-base/buildlink3.mk"
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.include "../../wip/jalview/buildlink3.mk"
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.include "../../devel/pth/buildlink3.mk"
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.include "../../mk/java-vm.mk"
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.include "../../mk/x11.buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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CLASSPATH:=${PKG_JAVA_HOME}/lib/classes.zip:${PREFIX}/lib/java/ant.jar:${PKG_JAVA_HOME}/lib/jsse.jar:${PREFIX}/lib/java/xerces.jar:${PKG_JAVA_HOME}/lib/tools.jar:${PREFIX}/lib/java/jalview.jar:${PREFIX}/lib/java/servlet.jar:${PREFIX}/java/iasp21/lib/activation.jar:${PREFIX}/java/iasp21/lib/mail.jar:${CLASSPATH}
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