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fb4dcc6a41
pkgsrc-wip
/
glimmerm
History
Roland Illig
2a1ca3d973
Replaced USE_GNU_TOOLS+=make with USE_TOOLS+=gmake.
2005-05-24 10:29:21 +00:00
..
patches
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
DESCR
Removed trailing white-space.
2005-05-23 10:27:02 +00:00
distinfo
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
Makefile
Replaced USE_GNU_TOOLS+=make with USE_TOOLS+=gmake.
2005-05-24 10:29:21 +00:00
NOTES
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00
PLIST
A gene finder derived from Glimmer, but developed specifically for eukaryotes. It is based on a dynamic programing algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. It uses Interpolated Markov Model(IMM) for selecting thebest gene model. The system has been trained for Arabidopsis thaliana, Oryza sativa (rice),and Plasmodium falciparum (the malaria parasite), and should work well on closely related organisms.
2005-02-25 21:41:32 +00:00