pkgsrc/biology/fastDNAml/Makefile

# $NetBSD: Makefile,v 1.11 2014/12/20 12:02:28 mef Exp $

DISTNAME=	fastDNAml_1.2.2
PKGNAME=	fastDNAml-1.2.2
CATEGORIES=	biology
MASTER_SITES=	http://geta.life.uiuc.edu/~gary/programs/fastDNAml/

MAINTAINER=	babafou@babafou.eu.org
HOMEPAGE=	http://iubio.bio.indiana.edu/soft/molbio/evolve/fastdnaml/fastDNAml.html
COMMENT=	Program derived from Joseph Felsenstein's version 3.3 DNAML

WRKSRC=		${WRKDIR}/${DISTNAME}/source

INSTALLATION_DIRS=	bin

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${DESTDIR}${PREFIX}/bin
.for SCRIPT in ae2dnaml bootstrap categories categories_file		\
		checkpoint_summary clean_checkpoints clean_jumbles	\
		dnaml_progress fastDNAml_boot fastDNAml_loop		\
		frequencies global iterate_rates jumble min_info	\
		n_categories n_files out.PID outgroup printdata		\
		quickadd restart scores transition treefile		\
		treefile2prolog trees2NEXUS trees2prolog userlengths	\
		usertree usertrees weights weights_categories
	${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT}	\
		${DESTDIR}${PREFIX}/bin
.endfor
	${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/fastDNAml
.for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt
	${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC}		\
		${DESTDIR}${PREFIX}/share/doc/fastDNAml
.endfor

.include "../../mk/bsd.pkg.mk"
Update HOMEPAGE, was Host Unknown. But the link to download still gets 404. 2014-12-20 13:02:28 +01:00			`# $NetBSD: Makefile,v 1.11 2014/12/20 12:02:28 mef Exp $`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00
Update fastDNAml to version 1.2.2. Notable changes include: * Now under GPL * Convert to function definitions with parameter type lists * General code clean-up 2004-08-17 01:45:59 +02:00			`DISTNAME= fastDNAml_1.2.2`
			`PKGNAME= fastDNAml-1.2.2`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00			`CATEGORIES= biology`
			`MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/`

			`MAINTAINER= babafou@babafou.eu.org`
Update HOMEPAGE, was Host Unknown. But the link to download still gets 404. 2014-12-20 13:02:28 +01:00			`HOMEPAGE= http://iubio.bio.indiana.edu/soft/molbio/evolve/fastdnaml/fastDNAml.html`
Update to new COMMENT style: COMMENT var in Makefile instead of pkg/COMMENT. 2001-02-16 14:41:26 +01:00			`COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00
Update fastDNAml to version 1.2.2. Notable changes include: * Now under GPL * Convert to function definitions with parameter type lists * General code clean-up 2004-08-17 01:45:59 +02:00			`WRKSRC= ${WRKDIR}/${DISTNAME}/source`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00
Create directories before installing files into them. 2005-06-16 08:57:37 +02:00			`INSTALLATION_DIRS= bin`

call ${MAKE} with the right environment and arguments, override CC. fixes build with non-gcc. minor style fixes. 2004-01-29 14:41:05 +01:00			`do-install:`
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. 2008-03-03 01:51:43 +01:00			`${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${DESTDIR}${PREFIX}/bin`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00			`.for SCRIPT in ae2dnaml bootstrap categories categories_file \`
			`checkpoint_summary clean_checkpoints clean_jumbles \`
			`dnaml_progress fastDNAml_boot fastDNAml_loop \`
			`frequencies global iterate_rates jumble min_info \`
			`n_categories n_files out.PID outgroup printdata \`
			`quickadd restart scores transition treefile \`
			`treefile2prolog trees2NEXUS trees2prolog userlengths \`
			`usertree usertrees weights weights_categories`
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. 2008-03-03 01:51:43 +01:00			`${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} \`
			`${DESTDIR}${PREFIX}/bin`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00			`.endfor`
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. 2008-03-03 01:51:43 +01:00			`${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/fastDNAml`
Update fastDNAml to version 1.2.2. Notable changes include: * Now under GPL * Convert to function definitions with parameter type lists * General code clean-up 2004-08-17 01:45:59 +02:00			`.for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt`
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target. 2008-03-03 01:51:43 +01:00			`${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} \`
			`${DESTDIR}${PREFIX}/share/doc/fastDNAml`
Update fastDNAml to version 1.2.2. Notable changes include: * Now under GPL * Convert to function definitions with parameter type lists * General code clean-up 2004-08-17 01:45:59 +02:00			`.endfor`
Import of fastDNAml-1.2.1, a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences, as submitted by Marc Baudoin, thanks! 1999-07-28 22:18:55 +02:00
			`.include "../../mk/bsd.pkg.mk"`