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Remove @dirrm entries from PLISTs
2009-06-14 19:28:16 +02:00
@comment $NetBSD: PLIST,v 1.7 2009/06/14 17:34:34 joerg Exp $
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
bin/annotate
bin/combineMUMs
Updated biology/mummer to release 3.18. Changes include: - MUMmer now resides at Sourceforge - new tools such as delta-filter - more extensive html documentation and examples - bug fixes
2006-01-29 20:31:43 +01:00
bin/delta-filter
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
bin/gaps
bin/mgaps
bin/mummer
bin/postnuc
bin/postpro
bin/prenuc
bin/prepro
bin/repeat-match
bin/show-aligns
bin/show-coords
Updated biology/mummer to release 3.18. Changes include: - MUMmer now resides at Sourceforge - new tools such as delta-filter - more extensive html documentation and examples - bug fixes
2006-01-29 20:31:43 +01:00
bin/show-snps
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
bin/show-tiling
Updated mummer to 3.19. Changes since 3.18: - More documentation.
2007-01-18 20:13:10 +01:00
share/doc/mummer/README
share/doc/mummer/differences.README
updated to MUMmer3.20
2008-10-12 00:01:13 +02:00
share/doc/mummer/dnadiff.README
Updated biology/mummer to release 3.18. Changes include: - MUMmer now resides at Sourceforge - new tools such as delta-filter - more extensive html documentation and examples - bug fixes
2006-01-29 20:31:43 +01:00
share/doc/mummer/mapview.README
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
share/doc/mummer/maxmat3man.tex
share/doc/mummer/maxmat3src.pdf
share/doc/mummer/nucmer.README
share/doc/mummer/optionman.sty
share/doc/mummer/promer.README
share/doc/mummer/run-mummer1.README
share/doc/mummer/run-mummer3.README
share/doc/mummer/skaff.sty
Updated mummer to 3.19. Changes since 3.18: - More documentation.
2007-01-18 20:13:10 +01:00
share/doc/mummer/web/MUMmer.pdf
share/doc/mummer/web/MUMmer2.pdf
share/doc/mummer/web/MUMmer3.pdf
share/doc/mummer/web/XFiles.pdf
share/doc/mummer/web/applications.html
share/doc/mummer/web/compare.html
share/doc/mummer/web/examples/data/B_anthracis_Mslice.fasta
share/doc/mummer/web/examples/data/B_anthracis_contigs.fasta
share/doc/mummer/web/examples/data/D_melanogaster_2Rslice.cds
share/doc/mummer/web/examples/data/D_melanogaster_2Rslice.fasta
share/doc/mummer/web/examples/data/D_melanogaster_2Rslice.utr
share/doc/mummer/web/examples/data/D_pseudoobscura_contigs.fasta
share/doc/mummer/web/examples/data/H_pylori26695_Bslice.fasta
share/doc/mummer/web/examples/data/H_pylori26695_Eslice.fasta
share/doc/mummer/web/examples/data/H_pyloriJ99_Bslice.fasta
share/doc/mummer/web/examples/data/H_pyloriJ99_Eslice.fasta
share/doc/mummer/web/examples/data/README
share/doc/mummer/web/examples/data/mapview_0.fig
share/doc/mummer/web/examples/data/mapview_0.pdf
share/doc/mummer/web/examples/data/mummer.fplot
share/doc/mummer/web/examples/data/mummer.gp
share/doc/mummer/web/examples/data/mummer.mums
share/doc/mummer/web/examples/data/mummer.ps
share/doc/mummer/web/examples/data/mummer.rplot
share/doc/mummer/web/examples/data/mummer1.align
share/doc/mummer/web/examples/data/mummer1.errorsgaps
share/doc/mummer/web/examples/data/mummer1.gaps
share/doc/mummer/web/examples/data/mummer1.out
share/doc/mummer/web/examples/data/mummer3.align
share/doc/mummer/web/examples/data/mummer3.errorsgaps
share/doc/mummer/web/examples/data/mummer3.gaps
share/doc/mummer/web/examples/data/mummer3.out
share/doc/mummer/web/examples/data/nucmer.cluster
share/doc/mummer/web/examples/data/nucmer.coords
share/doc/mummer/web/examples/data/nucmer.delta
share/doc/mummer/web/examples/data/nucmer.snps
share/doc/mummer/web/examples/data/nucmer.tiling
share/doc/mummer/web/examples/data/promer.aligns
share/doc/mummer/web/examples/data/promer.cluster
share/doc/mummer/web/examples/data/promer.coords
share/doc/mummer/web/examples/data/promer.delta
share/doc/mummer/web/examples/dotplot.gif
share/doc/mummer/web/examples/examples_logo.gif
share/doc/mummer/web/examples/index.html
share/doc/mummer/web/examples/mapplot.gif
share/doc/mummer/web/examples/mapview_fig.jpg
share/doc/mummer/web/examples/mummer_ps.jpg
share/doc/mummer/web/index.html
share/doc/mummer/web/logo.gif
share/doc/mummer/web/manual/AlignmentTypes.odg
share/doc/mummer/web/manual/AlignmentTypes.pdf
share/doc/mummer/web/manual/covplot.gif
share/doc/mummer/web/manual/dotplot.gif
share/doc/mummer/web/manual/gaps.gif
share/doc/mummer/web/manual/index.html
share/doc/mummer/web/manual/manual_logo.gif
share/doc/mummer/web/manual/mapplot.gif
share/doc/mummer/web/manual/mgaps.gif
share/doc/mummer/web/manual/multiplota.gif
share/doc/mummer/web/manual/multiplotb.gif
share/doc/mummer/web/manual/nuc_proex.gif
share/doc/mummer/web/manual/nucex.gif
share/doc/mummer/web/manual/osi.gif
share/doc/mummer/web/manual/pro_proex.gif
share/doc/mummer/web/mummer-help.gif
share/doc/mummer/web/mummer-users.gif
updated to MUMmer3.20
2008-10-12 00:01:13 +02:00
share/mummer/dnadiff
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
share/mummer/exact-tandems
Updated biology/mummer to release 3.18. Changes include: - MUMmer now resides at Sourceforge - new tools such as delta-filter - more extensive html documentation and examples - bug fixes
2006-01-29 20:31:43 +01:00
share/mummer/mapview
Initial import of mummer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
2003-09-28 00:24:56 +02:00
share/mummer/mummerplot
share/mummer/nucmer
share/mummer/nucmer2xfig
share/mummer/promer
share/mummer/run-mummer1
share/mummer/run-mummer3
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