2019-05-11 16:27:18 +02:00
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# $NetBSD: Makefile,v 1.2 2019/05/11 14:27:18 bacon Exp $
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biology/vsearch: import vsearch-2.13.3
VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).
2019-05-10 18:19:22 +02:00
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2019-05-11 16:27:18 +02:00
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DISTNAME= vsearch-2.13.4
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biology/vsearch: import vsearch-2.13.3
VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).
2019-05-10 18:19:22 +02:00
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/}
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GITHUB_TAG= v${PKGVERSION_NOREV}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://github.com/torognes/vsearch
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COMMENT= Versatile open-source tool for metagenomics
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LICENSE= gnu-gpl-v3
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# Works on powerpc64, but only in little endian mode
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ONLY_FOR_PLATFORM= *-*-aarch64 *-*-x86_64
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USE_LANGUAGES= c c++
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USE_TOOLS+= autoconf automake autoreconf gmake
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS+= --disable-pdfman
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pre-configure:
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cd ${WRKSRC} && autoreconf -fi
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../archivers/bzip2/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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