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pkgsrc/biology/genesplicer/Makefile

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Second round of explicit pax dependencies. As reminded by tnn@, many packages used to use ${PAX}. Use the common way of directly calling pax, it is created as tool after all.
2008-05-26 04:13:14 +02:00
# $NetBSD: Makefile,v 1.11 2008/05/26 02:13:16 joerg Exp $
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
#
DISTNAME= GeneSplicer
PKGNAME= genesplicer-20030403
CATEGORIES= biology
MASTER_SITES= ftp://ftp.tigr.org/pub/software/GeneSplicer/
MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= ftp://ftp.tigr.org/pub/software/GeneSplicer/
COMMENT= Computational Method for Splice Site Prediction
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target.
2008-03-03 01:51:43 +01:00
PKG_DESTDIR_SUPPORT= user-destdir
Uses both C and C++
2006-02-26 14:41:17 +01:00
USE_LANGUAGES= c c++
Second round of explicit pax dependencies. As reminded by tnn@, many packages used to use ${PAX}. Use the common way of directly calling pax, it is created as tool after all.
2008-05-26 04:13:14 +02:00
USE_TOOLS+= pax
Uses both C and C++
2006-02-26 14:41:17 +01:00
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
EXDIR= ${PREFIX}/share/examples/genesplicer
EXAMPLES= arabidopsis drosophila malaria pyoelii human rice \
training_data_sets/Arabidopsis \
training_data_sets/Human
Rename variable MAKEFILE to MAKE_FILE.
2006-09-09 04:41:53 +02:00
MAKE_FILE= makefile
Fixed wrong usage of WRKSRC.
2005-11-03 20:36:39 +01:00
BUILD_DIRS= sources
Create directories before installing files into them.
2005-06-16 08:57:37 +02:00
INSTALLATION_DIRS= bin
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
do-install:
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target.
2008-03-03 01:51:43 +01:00
${INSTALL_PROGRAM} ${WRKSRC}/sources/genesplicer ${DESTDIR}${PREFIX}/bin
${INSTALL_DATA_DIR} ${DESTDIR}${EXDIR}
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
.for DOC in readme fasta.example fasta.results
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target.
2008-03-03 01:51:43 +01:00
${INSTALL_DATA} ${WRKSRC}/sources/${DOC} ${DESTDIR}${EXDIR}
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
.endfor
Second round of explicit pax dependencies. As reminded by tnn@, many packages used to use ${PAX}. Use the common way of directly calling pax, it is created as tool after all.
2008-05-26 04:13:14 +02:00
cd ${WRKSRC} && pax -rw ${EXAMPLES} ${DESTDIR}${EXDIR}
Initial import of genesplicer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
2003-09-30 03:57:08 +02:00
.include "../../mk/bsd.pkg.mk"
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