kpriv/pkgsrc
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
pkgsrc/biology/pdbalign/Makefile

22 lines
587 B
Makefile
Raw Normal View History

"user-destdir" is default these days
2012-09-11 22:32:10 +02:00
# $NetBSD: Makefile,v 1.6 2012/09/11 20:32:13 asau Exp $
Rats. Re-import ``align'' as ``pdbalign'', as that's the package's name. Given a GCG multiple sequence alignment file (a GCG MSF file), which a includes a sequence of known structure, the program pdbalign maps the sequence variability onto the known structure. The central premise is of course, that for a closely related family of proteins (sequence ID > 40%) the 3-D structures will not be significantly different.pdbdist calculates the distance from each atom in the pdb file to each atom in the ligand and records the minimum in the temperature field for that atom record.distalign reads the output from pdbdist and also the original GCG MSF file and produces an MSF file annotated with a measure of sequence variability and the distance of the residue at that position (of the sequence of known structure) from the ligand.
2003-09-26 05:15:28 +02:00
#
DISTNAME= pdbalign
PKGNAME= pdbalign-20030812
CATEGORIES= biology
MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/
MAINTAINER= hdp@cs.nmsu.edu
Whitespace cleanup, courtesy of pkglint. Patch provided by Sergey Svishchev in private mail.
2007-02-22 20:26:05 +01:00
HOMEPAGE= #empty
Rats. Re-import ``align'' as ``pdbalign'', as that's the package's name. Given a GCG multiple sequence alignment file (a GCG MSF file), which a includes a sequence of known structure, the program pdbalign maps the sequence variability onto the known structure. The central premise is of course, that for a closely related family of proteins (sequence ID > 40%) the 3-D structures will not be significantly different.pdbdist calculates the distance from each atom in the pdb file to each atom in the ligand and records the minimum in the temperature field for that atom record.distalign reads the output from pdbdist and also the original GCG MSF file and produces an MSF file annotated with a measure of sequence variability and the distance of the residue at that position (of the sequence of known structure) from the ligand.
2003-09-26 05:15:28 +02:00
COMMENT= Prediction of Protein Secondary Structure and Active Sites
Move WRKSRC definition away from the first paragraph in a Makefile.
2004-01-20 13:07:06 +01:00
WRKSRC= ${WRKDIR}
Create directories before installing files into them.
2005-06-16 08:57:37 +02:00
INSTALLATION_DIRS= bin
Move WRKSRC definition away from the first paragraph in a Makefile.
2004-01-20 13:07:06 +01:00
Rats. Re-import ``align'' as ``pdbalign'', as that's the package's name. Given a GCG multiple sequence alignment file (a GCG MSF file), which a includes a sequence of known structure, the program pdbalign maps the sequence variability onto the known structure. The central premise is of course, that for a closely related family of proteins (sequence ID > 40%) the 3-D structures will not be significantly different.pdbdist calculates the distance from each atom in the pdb file to each atom in the ligand and records the minimum in the temperature field for that atom record.distalign reads the output from pdbdist and also the original GCG MSF file and produces an MSF file annotated with a measure of sequence variability and the distance of the residue at that position (of the sequence of known structure) from the ligand.
2003-09-26 05:15:28 +02:00
do-install:
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target.
2008-03-03 01:51:43 +01:00
${INSTALL_PROGRAM} ${WRKSRC}/pdbalign ${DESTDIR}${PREFIX}/bin
${INSTALL_PROGRAM} ${WRKSRC}/distalign ${DESTDIR}${PREFIX}/bin
${INSTALL_PROGRAM} ${WRKSRC}/pdbdist ${DESTDIR}${PREFIX}/bin
Rats. Re-import ``align'' as ``pdbalign'', as that's the package's name. Given a GCG multiple sequence alignment file (a GCG MSF file), which a includes a sequence of known structure, the program pdbalign maps the sequence variability onto the known structure. The central premise is of course, that for a closely related family of proteins (sequence ID > 40%) the 3-D structures will not be significantly different.pdbdist calculates the distance from each atom in the pdb file to each atom in the ligand and records the minimum in the temperature field for that atom record.distalign reads the output from pdbdist and also the original GCG MSF file and produces an MSF file annotated with a measure of sequence variability and the distance of the residue at that position (of the sequence of known structure) from the ligand.
2003-09-26 05:15:28 +02:00
.include "../../mk/bsd.pkg.mk"
Reference in a new issue Copy permalink