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biology/bowtie2: Update to 2.5.3 

A few bug fixes
Add option for faster indexing of small indexes
Changes: https://github.com/BenLangmead/bowtie2/releases
Reported by: portscout
This commit is contained in:
bacon 2024-01-18 23:30:12 +00:00
parent d5c809001f
commit 100358b726
5 changed files with 9 additions and 9 deletions
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4
biology/bowtie2/Makefile
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@ -1,6 +1,6 @@
# $NetBSD: Makefile,v 1.9 2023/10/18 13:34:23 bacon Exp $
# $NetBSD: Makefile,v 1.10 2024/01/18 23:30:12 bacon Exp $
DISTNAME= bowtie2-2.5.2
DISTNAME= bowtie2-2.5.3
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=BenLangmead/}
GITHUB_TAG= v${PKGVERSION_NOREV}

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biology/bowtie2/PLIST
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@comment $NetBSD: PLIST,v 1.4 2023/10/18 13:34:23 bacon Exp $
@comment $NetBSD: PLIST,v 1.5 2024/01/18 23:30:12 bacon Exp $
bin/bowtie2
bin/bowtie2-align-l
bin/bowtie2-align-s

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biology/bowtie2/distinfo
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$NetBSD: distinfo,v 1.6 2023/10/18 13:34:23 bacon Exp $
$NetBSD: distinfo,v 1.7 2024/01/18 23:30:12 bacon Exp $
BLAKE2s (bowtie2-2.5.2.tar.gz) = 419a51add22afdb8020a650e627275aeaf93d68c7b08af3354dd230fbefa0b18
SHA512 (bowtie2-2.5.2.tar.gz) = e3887439fc5b2c553977451bb519b9d60756a743311690ecd4cd997251630f465f82a82bd47df7f8a76a4d6b4d62e08aa80512a6a7f08e62169dca433c45eeef
Size (bowtie2-2.5.2.tar.gz) = 10632647 bytes
BLAKE2s (bowtie2-2.5.3.tar.gz) = 7d1bc829a0b5c9596bbfb45504cee42688dd779bf733958ad188e9be2ddc6ee0
SHA512 (bowtie2-2.5.3.tar.gz) = 5ef4cbbcb379e1c993e6cc11e2b851f9f80b5ceb274c8fee5b278aecaa76fc40732a0db4ef5e1dda34a35fbb0f0ce6bd86293f4d928e39eaf633e8be664066b6
Size (bowtie2-2.5.3.tar.gz) = 10635819 bytes
SHA1 (patch-Makefile) = 59b9823472a371fa9142a69b37df406c4ed47cd9
SHA1 (patch-scripts_bowtie2-hbb.sh) = d360774cfef0675b4c1cdd1175b394d2cf7f761a

2
biology/bowtie2/patches/patch-Makefile
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$NetBSD: patch-Makefile,v 1.4 2023/10/18 13:34:23 bacon Exp $
$NetBSD: patch-Makefile,v 1.5 2024/01/18 23:30:12 bacon Exp $
# Respect pkgsrc env

2
biology/bowtie2/patches/patch-scripts_bowtie2-hbb.sh
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$NetBSD: patch-scripts_bowtie2-hbb.sh,v 1.4 2023/10/18 13:34:23 bacon Exp $
$NetBSD: patch-scripts_bowtie2-hbb.sh,v 1.5 2024/01/18 23:30:12 bacon Exp $
# Eliminate bash dependency