Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation. Changes: -:- hmmsearch intermittently failed on Swissprot searches, on some platforms (reports on AMD/Linux; Mac OS/X). (#h25) -:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT, and could explode to very large allocations when searching with large sequences. (#h26) -:- technical improvements in handing dsq's (digitized sequences); "bug" has no visible effects, except when compiling on different platforms. (#h27) -:- typo fix in P7Forward() recursion; typo may have had minor effect on calculated scores. (#h28) -:- hmmalign now includes --outformat and --oneline option for specifying different output alignment formats than the default Stockholm.
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2 changed files with 8 additions and 7 deletions
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# $NetBSD: Makefile,v 1.5 2004/08/16 02:47:49 ben Exp $
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# $NetBSD: Makefile,v 1.6 2004/12/01 04:01:09 minskim Exp $
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#
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DISTNAME= hmmer-2.3.1
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DISTNAME= hmmer-2.3.2
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.1/
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MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/
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MAINTAINER= hdp@cs.nmsu.edu
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HOMEPAGE= http://hmmer.wustl.edu/
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COMMENT= Implementation of profile HMM software for protein sequence analysis
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WRKSRC= ${WRKDIR}/hmmer-2.3.1
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PKG_INSTALLATION_TYPES= overwrite pkgviews
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USE_BUILDLINK3= yes
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GNU_CONFIGURE= yes
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$NetBSD: distinfo,v 1.3 2004/08/23 14:37:04 ben Exp $
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$NetBSD: distinfo,v 1.4 2004/12/01 04:01:09 minskim Exp $
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SHA1 (hmmer-2.3.1.tar.gz) = bf6a3ec56c24332d7e66d6ce8865de1d72dce01f
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Size (hmmer-2.3.1.tar.gz) = 1023122 bytes
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SHA1 (hmmer-2.3.2.tar.gz) = aa34cb97cbc43ff3bd92dd111ba5677298fe2d40
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Size (hmmer-2.3.2.tar.gz) = 1024933 bytes
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SHA1 (patch-aa) = e443df78be8036bb8e58567ae9e9f734f8b6ae99
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