kpriv
/
pkgsrc
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

biology/atac-seq: Update to 1.4 

Add biology/py-macs3 dep to metapackage
This commit is contained in:
bacon 2024-01-10 16:10:17 +00:00
parent 5edfcbbb2d
commit 2d164089a9
2 changed files with 9 additions and 7 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
biology/atac-seq/DESCR
View File

@ -1,5 +1,6 @@
The atac-seq meta-package provides the core tools needed for performing
a typical ATAC-Seq differential accessibility analysis, including
adapter trimming, quality control, alignment, peak calling, and
identification of differentially accessible peaks. Researchers may
want additional tools for data manipulation, gene ontology, etc.
The atac-seq meta-package provides the core tools needed for
performing a typical ATAC-Seq differential accessibility analysis,
including adapter trimming, quality control, alignment, peak calling,
and identification of differentially accessible peaks. Researchers
may want additional tools for data manipulation, gene ontology,
etc.

5
biology/atac-seq/Makefile
View File

@ -1,9 +1,9 @@
# $NetBSD: Makefile,v 1.8 2023/12/23 16:23:22 bacon Exp $
# $NetBSD: Makefile,v 1.9 2024/01/10 16:10:17 bacon Exp $
#
# Update minor version when adding or removing dependencies
# Update revision for all other changes
DISTNAME= atac-seq-1.3
DISTNAME= atac-seq-1.4
CATEGORIES= biology meta-pkgs
MASTER_SITES= # empty
@ -20,6 +20,7 @@ DEPENDS+= bowtie2>0:../../biology/bowtie2
DEPENDS+= samtools>0:../../biology/samtools
DEPENDS+= igv>0:../../biology/igv
DEPENDS+= ${PYPKGPREFIX}-macs2>0:../../biology/py-macs2
DEPENDS+= ${PYPKGPREFIX}-macs3>0:../../biology/py-macs3
DEPENDS+= fasda>0:../../biology/fasda
DEPENDS+= peak-classifier>0:../../biology/peak-classifier
DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc