Update to OpenMPI 1.4.3
New in 1.4.3 ------------ - Fixed handling of the array_of_argv parameter in the Fortran binding of MPI_COMM_SPAWN_MULTIPLE. - Fixed a problem with the Fortran binding for MPI_FILE_CREATE_ERRHANDLER. Thanks to Secretan Yves for identifying the issue. - Updates to the LSF PLM to ensure that the path is correctly passed. Thanks to Teng Lin for the patch. - Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER bindings. Thanks to Paul Kapinos for pointing out the issue. - Fixed various MPI_THREAD_MULTIPLE race conditions. - Fixed an issue with an undeclared variable from ptmalloc2 munmap on BSD systems. - Fixes for BSD interface detection. - Various other BSD fixes. Thanks to Kevin Buckley helping to track. all of this down. - Fixed issues with the use of the -nper* mpirun command line arguments. - Fixed an issue with coll tuned dynamic rules. - Fixed an issue with the use of OPAL_DESTDIR being applied too aggressively. - Fixed an issue with one-sided xfers when the displacement exceeds 2GBytes. - Change to ensure TotalView works properly on Darwin. - Added support for Visual Studio 2010. - Fix to ensure proper placement of VampirTrace header files. - Needed to add volatile keyword to a varialbe used in debugging (MPIR_being_debugged). - Fixed a bug in inter-allgather. - Fixed malloc(0) warnings. - Corrected a typo the MPI_Comm_size man page (intra -> inter). Thanks to Simon number.cruncher for pointing this out. - Fixed a SegV in orted when given more than 127 app_contexts. - Removed xgrid source code from the 1.4 branch since it is no longer supported in the 1.4 series. - Removed the --enable-opal-progress-threads config option since opal progress thread support does not work in 1.4.x. - Fixed a defect in VampirTrace's vtfilter. - Fixed wrong Windows path in hnp_contact. - Removed the requirement for a paffinity component. - Removed a hardcoded limit of 64 interconnected jobs. - Fix to allow singletons to use ompi-server for rendezvous. - Fixed bug in output-filename option. - Fix to correctly handle failures in mx_init(). - Fixed a potential Fortran memory leak. - Fixed an incorrect branch in some ppc32 assembly code. Thanks to Matthew Clark for this fix. - Remove use of undocumented AS_VAR_GET macro during configuration. - Fixed an issue with VampirTrace's wrapper for MPI_init_thread. - Updated mca-btl-openib-device-params.ini file with various new vendor id's. - Configuration fixes to ensure CPPFLAGS in handled properly if a non-standard valgrind location was specified. - Various man page updates
This commit is contained in:
asau
parent
175827e64c
commit
859ffc5347
4 changed files with 9 additions and 182 deletions
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@ -1,6 +1,6 @@
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# $NetBSD: Makefile,v 1.6 2010/07/30 10:36:34 asau Exp $
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# $NetBSD: Makefile,v 1.7 2010/11/24 01:56:13 asau Exp $
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DISTNAME= openmpi-1.4.2
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DISTNAME= openmpi-1.4.3
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CATEGORIES= parallel
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MASTER_SITES= http://www.open-mpi.org/software/ompi/v1.4/downloads/
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EXTRACT_SUFX= .tar.bz2
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@ -1,4 +1,4 @@
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@comment $NetBSD: PLIST,v 1.3 2010/05/14 20:12:58 asau Exp $
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@comment $NetBSD: PLIST,v 1.4 2010/11/24 01:56:13 asau Exp $
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bin/mpiCC
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bin/mpic++
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bin/mpicc
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@ -479,6 +479,7 @@ share/openmpi/help-mca-coll-base.txt
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share/openmpi/help-mca-param.txt
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share/openmpi/help-mpi-api.txt
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share/openmpi/help-mpi-btl-base.txt
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share/openmpi/help-mpi-btl-tcp.txt
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share/openmpi/help-mpi-common-sm.txt
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share/openmpi/help-mpi-errors.txt
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share/openmpi/help-mpi-runtime.txt
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@ -1,8 +1,8 @@
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$NetBSD: distinfo,v 1.3 2010/05/14 20:12:58 asau Exp $
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$NetBSD: distinfo,v 1.4 2010/11/24 01:56:13 asau Exp $
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SHA1 (openmpi-1.4.2.tar.bz2) = 3e85092433d0e399cc7a51c018f9d13562f78b80
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RMD160 (openmpi-1.4.2.tar.bz2) = 2c9fbcc8f77e7fa28e2bd062875d484548cc0b79
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Size (openmpi-1.4.2.tar.bz2) = 6630550 bytes
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SHA1 (openmpi-1.4.3.tar.bz2) = 9d24b6969d73605904855eb32d40d6b07e231932
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RMD160 (openmpi-1.4.3.tar.bz2) = 087532de57244c03941421162caa9e5537b4eba1
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Size (openmpi-1.4.3.tar.bz2) = 6626909 bytes
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SHA1 (patch-aa) = dfc2eb59ea592823d93a7ae3e223e703450201ad
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SHA1 (patch-ab) = c4be561af983b38803ba1f76a4ff5a6646072c3a
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SHA1 (patch-ac) = 2eb37bf842278c712561e30457d7e00889d12dcd
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@ -10,7 +10,7 @@ SHA1 (patch-ad) = ee74acac5c7a7b022ee9a03957f8f3d71c2579fd
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SHA1 (patch-ae) = a4848899dcd0413caa1c99832477a4bd86b51112
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SHA1 (patch-af) = 812e623c39235098565762c098a40c1cb4f51f23
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SHA1 (patch-ag) = fc29742c423d2376893d4d5c3da7a0514f311262
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SHA1 (patch-ah) = bbc7422eeede4468590262ee84c54d8d0b911445
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SHA1 (patch-ah) = da39a3ee5e6b4b0d3255bfef95601890afd80709
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SHA1 (patch-ai) = e341eefb09df978cf1d43c2176f5f8c6d09f703e
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SHA1 (patch-aj) = 4521e29de16a6cd5bf1a9ea7677b51cd0e6eb86c
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SHA1 (patch-ak) = d9a10360eec6dab95e08d4ac0a4d7da603ac4737
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@ -1,174 +0,0 @@
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$NetBSD: patch-ah,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
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Rewrite network interface configuration using getifaddrs(3) for BSD,
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this should fix OpenMPI for NetBSD. By Kevin M. Buckley.
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--- opal/util/if.c.orig 2009-12-08 23:36:09.000000000 +0300
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+++ opal/util/if.c 2009-12-13 00:06:38.000000000 +0300
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@@ -38,6 +38,9 @@
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#endif
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#ifdef HAVE_NETINET_IN_H
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#include <netinet/in.h>
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+#if defined(__DragonFly__)
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+#define IN_LINKLOCAL(i) (((u_int32_t)(i) & 0xffff0000) == 0xa9fe0000)
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+#endif
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#endif
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#ifdef HAVE_ARPA_INET_H
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#include <arpa/inet.h>
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@@ -164,6 +167,145 @@
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false, false, (int)false, &sd);
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do_not_resolve = OPAL_INT_TO_BOOL(sd);
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+#if defined(__NetBSD__) || defined(__FreeBSD__) || \
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+ defined(__OpenBSD__) || defined(__DragonFly__)
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+ /* configure using getifaddrs(3) */
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+ {
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+ OBJ_CONSTRUCT(&opal_if_list, opal_list_t);
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+
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+ struct ifaddrs **ifadd_list;
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+ struct ifaddrs *cur_ifaddrs;
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+ struct sockaddr_in* sin_addr;
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+
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+ /*
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+ * the manpage claims that getifaddrs() allocates the memory,
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+ * and freeifaddrs() is later used to release the allocated memory.
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+ * however, without this malloc the call to getifaddrs() segfaults
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+ */
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+ ifadd_list = (struct ifaddrs **) malloc(sizeof(struct ifaddrs*));
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+
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+ /* create the linked list of ifaddrs structs */
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+ if(getifaddrs(ifadd_list) < 0) {
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+ opal_output(0, "opal_ifinit: getifaddrs() failed with error=%d\n",
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+ errno);
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+ return OPAL_ERROR;
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+ }
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+
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+ for(cur_ifaddrs = *ifadd_list; NULL != cur_ifaddrs;
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+ cur_ifaddrs = cur_ifaddrs->ifa_next) {
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+
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+ opal_if_t intf;
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+ opal_if_t *intf_ptr;
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+ struct in_addr a4;
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+
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+#if 0
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+ printf("interface %s.\n", cur_ifaddrs->ifa_name);
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+#endif
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+ /* skip non- af_inet interface addresses */
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+ if(AF_INET != cur_ifaddrs->ifa_addr->sa_family) {
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+#if 0
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+ printf("skipping non- af_inet interface %s, family %d.\n",
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+ cur_ifaddrs->ifa_name, cur_ifaddrs->ifa_addr->sa_family);
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+#endif
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+ continue;
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+ }
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+
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+ /* skip interface if it is down (IFF_UP not set) */
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+ if(0 == (cur_ifaddrs->ifa_flags & IFF_UP)) {
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+#if 0
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+ printf("skipping non-up interface %s.\n", cur_ifaddrs->ifa_name);
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+#endif
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+ continue;
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+ }
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+
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+ /* skip interface if it is a loopback device (IFF_LOOPBACK set) */
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+ /* or if it is a point-to-point interface */
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+ /* TODO: do we really skip p2p? */
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+ if(0 != (cur_ifaddrs->ifa_flags & IFF_LOOPBACK)
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+ || 0!= (cur_ifaddrs->ifa_flags & IFF_POINTOPOINT)) {
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+#if 0
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+ printf("skipping loopback interface %s.\n", cur_ifaddrs->ifa_name);
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+#endif
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+ continue;
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+ }
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+
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+#if 0
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+ printf("sa_len %d.\n", cur_ifaddrs->ifa_addr->sa_len);
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+#endif
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+ sin_addr = (struct sockaddr_in *) cur_ifaddrs->ifa_addr;
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+
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+ /* Do we really need to skip link-local addresses? */
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+#if 0
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+ /* skip link local address: */
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+ if(IN_LINKLOCAL (htonl(((struct sockaddr_in*)cur_ifaddrs->ifa_addr)->sin_addr.s_addr))) {
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+#if 0
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+ opal_output(0, "opal_ifinit: skipping link-local ip address on interface %s.\n",
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+ cur_ifaddrs->ifa_name);
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+#endif
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+ continue;
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+ }
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+#endif
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+
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+ memset(&intf, 0, sizeof(intf));
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+ OBJ_CONSTRUCT(&intf, opal_list_item_t);
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+#if 0
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+ char *addr_name = (char *) malloc(48*sizeof(char));
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+ inet_ntop(AF_INET, &sin_addr->sin_addr, addr_name, 48*sizeof(char));
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+ opal_output(0, "inet capable interface %s discovered, address %s.\n",
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+ cur_ifaddrs->ifa_name, addr_name);
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+ free(addr_name);
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+#endif
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+
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+ /* fill values into the opal_if_t */
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+ memcpy(&a4, &(sin_addr->sin_addr), sizeof(struct in_addr));
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+
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+ strncpy(intf.if_name, cur_ifaddrs->ifa_name, IF_NAMESIZE);
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+ intf.if_index = opal_list_get_size(&opal_if_list) + 1;
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+ ((struct sockaddr_in*) &intf.if_addr)->sin_addr = a4;
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+ ((struct sockaddr_in*) &intf.if_addr)->sin_family = AF_INET;
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+ ((struct sockaddr_in*) &intf.if_addr)->sin_len = cur_ifaddrs->ifa_addr->sa_len;
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+
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+ /* since every scope != 0 is ignored, we just set the scope to 0 */
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+ /* There's no scope_id in the non-ipv6 stuff
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+ ((struct sockaddr_in6*) &intf.if_addr)->sin6_scope_id = 0;
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+ */
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+
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+ /*
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+ * hardcoded netmask, adrian says that's ok
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+ */
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+ /* Non-NetBSD uses intf.if_mask = prefix(((struct sockaddr_in*) &ifr->ifr_addr)->sin_addr.s_addr); */
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+ /* intf.if_mask = 64; */
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+ intf.if_mask = prefix( sin_addr->sin_addr.s_addr);
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+ intf.if_flags = cur_ifaddrs->ifa_flags;
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+
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+ /*
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+ * FIXME: figure out how to gain access to the kernel index
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+ * (or create our own), getifaddrs() does not contain such
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+ * data
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+ */
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+
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+ intf.if_kernel_index = (uint16_t) if_nametoindex(cur_ifaddrs->ifa_name);
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+
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+ intf_ptr = (opal_if_t*) calloc(1, sizeof(opal_if_t));
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+ if(NULL == intf_ptr) {
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+ opal_output(0, "opal_ifinit: unable to allocate %lu bytes\n",
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+ sizeof(opal_if_t));
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+ OBJ_DESTRUCT(&intf);
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+ return OPAL_ERR_OUT_OF_RESOURCE;
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+ }
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+ memcpy(intf_ptr, &intf, sizeof(intf));
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+
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+#if 0
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+ printf("About to append interface %s.\n", cur_ifaddrs->ifa_name);
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+#endif
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+ /* opal_list_append(&opal_if_list, &intf_ptr->super); */
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+ opal_list_append(&opal_if_list, (opal_list_item_t*) intf_ptr);
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+
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+ OBJ_DESTRUCT(&intf);
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+ } /* of for loop over ifaddrs list */
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+
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+ }
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+#else
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/* create the internet socket to test off */
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/*
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Change AF_INET to AF_UNSPEC (or AF_INET6) and everything will fail.
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@@ -356,6 +498,10 @@
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}
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free(ifconf.ifc_req);
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close(sd);
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+
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+#endif /* anything other than {Net,Open,Free}BSD and DragonFly */
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+
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+
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#if OPAL_WANT_IPV6
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#ifdef __linux__ /* Linux does not have SIOCGL*, so parse
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/proc/net/if_inet6 instead */
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