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biology/fasda: Update to 0.1.5 

abundance:
    Update stringtie command to also produce gene-level abundances
    Output 0 for effective length for now to clearly indicate that it's invalid
normalize: Add --debug option
    Updates for latest libxtend API
Test -> Yeast-test
Add Mouse-test suite with multiple mouse data options
Streamline test scripts

Changes: https://github.com/auerlab/fasda/releases
This commit is contained in:
bacon 2023-10-28 20:33:41 +00:00
parent 44caeedf5c
commit bf619cf607
3 changed files with 7 additions and 7 deletions
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4
biology/fasda/Makefile
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@ -1,6 +1,6 @@
# $NetBSD: Makefile,v 1.5 2023/08/12 15:02:00 bacon Exp $
# $NetBSD: Makefile,v 1.6 2023/10/28 20:33:41 bacon Exp $
DISTNAME= fasda-0.1.4
DISTNAME= fasda-0.1.5
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}

2
biology/fasda/PLIST
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@ -1,4 +1,4 @@
@comment $NetBSD: PLIST,v 1.4 2023/08/12 15:02:00 bacon Exp $
@comment $NetBSD: PLIST,v 1.5 2023/10/28 20:33:41 bacon Exp $
bin/fasda
libexec/fasda/abundance
libexec/fasda/fold-change

8
biology/fasda/distinfo
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@ -1,5 +1,5 @@
$NetBSD: distinfo,v 1.4 2023/08/12 15:02:00 bacon Exp $
$NetBSD: distinfo,v 1.5 2023/10/28 20:33:41 bacon Exp $
BLAKE2s (fasda-0.1.4.tar.gz) = ad32eaef6ed1c5f74812f7af62d5cbb0d665013b1a0221a8bf7236f73a80c0c6
SHA512 (fasda-0.1.4.tar.gz) = 96837c99035692dc67d23eda814363cd8bdd38bc8924ebec7b63a4b0d30333d77ff822d365ee27c92f598242a73c3ee019948c18eb4a16aee627c2f666a5d467
Size (fasda-0.1.4.tar.gz) = 65254 bytes
BLAKE2s (fasda-0.1.5.tar.gz) = 4af2c1483c64245407af469be24f2ec08148bfca155bb45df3647daae7076275
SHA512 (fasda-0.1.5.tar.gz) = e11df85077ef5c7fadc74d7aada55304eb590a1b2e8ee22cb75c507012a1a88d18e2529da7a7241a7b45134ea7d0054c0f2bb5e9be3ad6012155a0b088f4cd93
Size (fasda-0.1.5.tar.gz) = 77908 bytes