diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index fd0b19dfb96c..90879f863bcc 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,29 +1,27 @@ -# $NetBSD: Makefile,v 1.1 2021/05/26 18:49:20 brook Exp $ +# $NetBSD: Makefile,v 1.2 2021/05/29 17:35:18 brook Exp $ GITHUB_PROJECT= minimap2 GITHUB_TAG= refs/tags/v2.18 DISTNAME= v2.18 PKGNAME= ${GITHUB_PROJECT}-${DISTNAME:S,^v,,} +PKGREVISION= 1 CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/} DIST_SUBDIR= ${GITHUB_PROJECT} MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= https://github.com/lh3/minimap2 -COMMENT= Minimap2 python binding +COMMENT= Sequence alignment program for noisy, long reads LICENSE= mit WRKSRC= ${WRKDIR}/minimap2-2.18 USE_TOOLS+= gmake -INSTALLATION_DIRS+= share/examples/minimap2 +INSTALLATION_DIRS+= bin ${PKGMANDIR}/man1 -post-install: - ${INSTALL_DATA} ${WRKSRC}/README.md ${DESTDIR}${PREFIX}/share/examples/minimap2 - ${INSTALL_DATA} ${WRKSRC}/cookbook.md ${DESTDIR}${PREFIX}/share/examples/minimap2 +do-install: + ${INSTALL} ${WRKSRC}/minimap2 ${DESTDIR}${PREFIX}/bin + ${INSTALL_DATA} ${WRKSRC}/minimap2.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1 -BUILDLINK_DEPENDS.py-cython+= build -BUILDLINK_API_DEPENDS.py-cython+= ${PYPKGPREFIX}-cython>=0.29.23 -.include "../../devel/py-cython/buildlink3.mk" -.include "../../lang/python/egg.mk" +.include "../../devel/zlib/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/minimap2/PLIST b/biology/minimap2/PLIST index 8c68d6a6aa6a..7139aa37d8bb 100644 --- a/biology/minimap2/PLIST +++ b/biology/minimap2/PLIST @@ -1,9 +1,3 @@ -@comment $NetBSD: PLIST,v 1.1 2021/05/26 18:49:20 brook Exp $ -bin/minimap2.py -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/PKG-INFO -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/SOURCES.txt -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/dependency_links.txt -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/top_level.txt -${PYSITELIB}/mappy.so -share/examples/minimap2/README.md -share/examples/minimap2/cookbook.md +@comment $NetBSD: PLIST,v 1.2 2021/05/29 17:35:18 brook Exp $ +bin/minimap2 +man/man1/minimap2.1