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biology/biolibc: Update to 0.2.6 

Updates for libxtend 0.2.0 API
Add full list of functions to biolibc(3) man page
Other documentation improvements

Changes: https://github.com/auerlab/biolibc/releases
This commit is contained in:
bacon 2023-10-28 20:31:40 +00:00
parent 4359c33efe
commit cecd27e888
5 changed files with 18 additions and 14 deletions
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11
biology/biolibc/DESCR
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@ -1,5 +1,6 @@
Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
Biolibc is a library of fast, memory-efficient, low-level functions
for processing biological data. Like libc, it consists of numerous
disparate, general-purpose functions which could be used by a wide
variety of applications. These include functions for streaming
common file formats such as SAM and VCF, string functions specific
to bioinformatics, etc.

4
biology/biolibc/Makefile
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@ -1,6 +1,6 @@
# $NetBSD: Makefile,v 1.13 2023/08/12 14:49:18 bacon Exp $
# $NetBSD: Makefile,v 1.14 2023/10/28 20:31:40 bacon Exp $
DISTNAME= biolibc-0.2.5
DISTNAME= biolibc-0.2.6
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}

5
biology/biolibc/PLIST
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@ -1,4 +1,4 @@
@comment $NetBSD: PLIST,v 1.12 2023/08/12 14:49:18 bacon Exp $
@comment $NetBSD: PLIST,v 1.13 2023/10/28 20:31:40 bacon Exp $
include/biolibc/align-accessors.h
include/biolibc/align-mutators.h
include/biolibc/align-rvs.h
@ -241,6 +241,7 @@ man/man3/bl_align_map_seq_sub.3
man/man3/bl_align_set_max_mismatch_percent.3
man/man3/bl_align_set_min_match.3
man/man3/bl_bed_check_order.3
man/man3/bl_bed_gff3_cmp.3
man/man3/bl_bed_gff_cmp.3
man/man3/bl_bed_read.3
man/man3/bl_bed_set_block_count.3
@ -431,6 +432,8 @@ man/man3/bl_sam_copy_header.3
man/man3/bl_sam_fclose.3
man/man3/bl_sam_fopen.3
man/man3/bl_sam_free.3
man/man3/bl_sam_gff3_cmp.3
man/man3/bl_sam_gff3_overlap.3
man/man3/bl_sam_gff_cmp.3
man/man3/bl_sam_gff_overlap.3
man/man3/bl_sam_init.3

4
biology/biolibc/buildlink3.mk
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@ -1,11 +1,11 @@
# $NetBSD: buildlink3.mk,v 1.12 2023/08/12 14:49:18 bacon Exp $
# $NetBSD: buildlink3.mk,v 1.13 2023/10/28 20:31:40 bacon Exp $
BUILDLINK_TREE+= biolibc
.if !defined(BIOLIBC_BUILDLINK3_MK)
BIOLIBC_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.2.5
BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.2.6
BUILDLINK_PKGSRCDIR.biolibc?= ../../biology/biolibc
.include "../../devel/libxtend/buildlink3.mk"

8
biology/biolibc/distinfo
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@ -1,5 +1,5 @@
$NetBSD: distinfo,v 1.14 2023/08/12 14:49:18 bacon Exp $
$NetBSD: distinfo,v 1.15 2023/10/28 20:31:40 bacon Exp $
BLAKE2s (biolibc-0.2.5.tar.gz) = ea2f46e8c6b26da34c2d10603ae1974e680e5df3a1ce8110235dc1afe1d24ec5
SHA512 (biolibc-0.2.5.tar.gz) = 647d8b19d007775f140b4b2d23bc8048ee6896e34b2d046109c71b1be13955a79991bb7dfbda8887db852265825d18b58e16195173624efb9bd19e6d1f5d13ba
Size (biolibc-0.2.5.tar.gz) = 141426 bytes
BLAKE2s (biolibc-0.2.6.tar.gz) = 9895be8848084d1f145b5987a4e3af99f61b1ba55db89873f915e610a7a335a7
SHA512 (biolibc-0.2.6.tar.gz) = 00dc3b2efa71113c6450191f11217e3b2d99bb31efb703bcd5f5f24e1d6507b9bc98d92329b1ea836397709070f45715e2adb991326ec303b97a8b484ba07712
Size (biolibc-0.2.6.tar.gz) = 147823 bytes