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Update fastDNAml to version 1.2.2. Notable changes include:

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* Now under GPL
* Convert to function definitions with parameter type lists
* General code clean-up
This commit is contained in:
ben 2004-08-16 23:45:59 +00:00
parent d7a674314f
commit d019d671d6
2 changed files with 13 additions and 22 deletions
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29
biology/fastDNAml/Makefile
View file

@ -1,7 +1,7 @@
# $NetBSD: Makefile,v 1.5 2004/01/29 13:41:05 grant Exp $ # $NetBSD: Makefile,v 1.6 2004/08/16 23:45:59 ben Exp $
DISTNAME= fastDNAml_1.2.1 DISTNAME= fastDNAml_1.2.2
PKGNAME= fastDNAml-1.2.1 PKGNAME= fastDNAml-1.2.2
CATEGORIES= biology CATEGORIES= biology
MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/ MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/
@ -9,22 +9,12 @@ MAINTAINER= babafou@babafou.eu.org
HOMEPAGE= http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html HOMEPAGE= http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html
COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML
RESTRICTED= "No commercial distribution without a royalty agreement with the author" WRKSRC= ${WRKDIR}/${DISTNAME}/source
NO_SRC_ON_CDROM= ${RESTRICTED}
NO_BIN_ON_CDROM= ${RESTRICTED}
WRKSRC= ${WRKDIR}/${DISTNAME} MAKE_FLAGS+= CC=${CC}
ALL_TARGET= fastDNAml
MAKE_FLAGS+= CC="${CC}"
MAKE_FLAGS+= LDFLAGS=-lm
do-build:
@cd ${WRKSRC}/source && \
${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${ALL_TARGET}
do-install: do-install:
${INSTALL_PROGRAM} ${WRKSRC}/source/fastDNAml ${PREFIX}/bin ${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin
.for SCRIPT in ae2dnaml bootstrap categories categories_file \ .for SCRIPT in ae2dnaml bootstrap categories categories_file \
checkpoint_summary clean_checkpoints clean_jumbles \ checkpoint_summary clean_checkpoints clean_jumbles \
dnaml_progress fastDNAml_boot fastDNAml_loop \ dnaml_progress fastDNAml_boot fastDNAml_loop \
@ -33,10 +23,11 @@ do-install:
quickadd restart scores transition treefile \ quickadd restart scores transition treefile \
treefile2prolog trees2NEXUS trees2prolog userlengths \ treefile2prolog trees2NEXUS trees2prolog userlengths \
usertree usertrees weights weights_categories usertree usertrees weights weights_categories
${INSTALL_SCRIPT} ${WRKSRC}/scripts/${SCRIPT} ${PREFIX}/bin ${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} ${PREFIX}/bin
.endfor .endfor
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/fastDNAml ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/fastDNAml
${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_doc_1.2.txt ${PREFIX}/share/doc/fastDNAml .for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt
${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_scripts.txt ${PREFIX}/share/doc/fastDNAml ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} ${PREFIX}/share/doc/fastDNAml
.endfor
.include "../../mk/bsd.pkg.mk" .include "../../mk/bsd.pkg.mk"

6
biology/fastDNAml/distinfo
View file

@ -1,4 +1,4 @@
$NetBSD: distinfo,v 1.2 2001/04/19 16:02:24 agc Exp $ $NetBSD: distinfo,v 1.3 2004/08/16 23:45:59 ben Exp $
SHA1 (fastDNAml_1.2.1.tar.gz) = f61a11f69746ad80e2009594f229db331cfbb8d0 SHA1 (fastDNAml_1.2.2.tar.gz) = 78197cbd760163f65085ac80c36d4286a1f29e34
Size (fastDNAml_1.2.1.tar.gz) = 63110 bytes Size (fastDNAml_1.2.2.tar.gz) = 70005 bytes