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py-biopython: initial commit

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The Biopython package contains high-quality, reusable modules and
scripts written in Python to make it as easy as possible to use Python
for bioinformatics.  The Biopython includes the follwing: the ability
to parse bioinformatics files into python utilizable data structures,
including support for the formats such as Blast output, Clustalw,
FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
Rebase, UniGene, and SwissProt.
This commit is contained in:
brook 2019-08-09 21:52:34 +00:00
parent 5d77fa1f65
commit ee6eb88eaa
6 changed files with 1303 additions and 2 deletions
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3
biology/Makefile
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@ -1,4 +1,4 @@
# $NetBSD: Makefile,v 1.54 2019/05/10 16:20:22 bacon Exp $
# $NetBSD: Makefile,v 1.55 2019/08/09 21:52:34 brook Exp $
#
COMMENT= Software for the biological sciences
@ -43,6 +43,7 @@ SUBDIR+= plinkseq
SUBDIR+= primer3
SUBDIR+= profit
SUBDIR+= puzzle
SUBDIR+= py-biopython
SUBDIR+= py-mol
SUBDIR+= py-pydicom
SUBDIR+= rasmol

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biology/py-biopython/DESCR Normal file
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The Biopython package contains high-quality, reusable modules and
scripts written in Python to make it as easy as possible to use Python
for bioinformatics. The Biopython includes the follwing: the ability
to parse bioinformatics files into python utilizable data structures,
including support for the formats such as Blast output, Clustalw,
FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
Rebase, UniGene, and SwissProt.

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biology/py-biopython/Makefile Normal file
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# $NetBSD: Makefile,v 1.1 2019/08/09 21:52:34 brook Exp $
DISTNAME= biopython-1.74
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
CATEGORIES= biology
MASTER_SITES= http://biopython.org/DIST/
MAINTAINER= pkgsrc-users@NetBSD.org
HOMEPAGE= http://biopython.org/
COMMENT= Python libraries for computational molecular biology
LICENSE= biopython-license
USE_TOOLS+= pax
INSTALLATION_DIRS+= share/doc/biopython share/examples/biopython
post-install:
${INSTALL_DATA} ${WRKSRC}/README.rst ${DESTDIR}${PREFIX}/share/doc/biopython
${INSTALL_DATA} ${WRKSRC}/Doc/Tutorial.pdf ${DESTDIR}${PREFIX}/share/doc/biopython
cd ${WRKSRC}/Doc/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/biopython
.include "../../lang/python/egg.mk"
.include "../../math/py-numpy/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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biology/py-biopython/PLIST Normal file
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biology/py-biopython/distinfo Normal file
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$NetBSD: distinfo,v 1.1 2019/08/09 21:52:34 brook Exp $
SHA1 (biopython-1.74.tar.gz) = 75b6b7f6f70220c984bc55d63145fea21b84387b
RMD160 (biopython-1.74.tar.gz) = c9b2130d895ecea30e37bdd71524ad7c6ea1db2d
SHA512 (biopython-1.74.tar.gz) = a5611b993e383d76d2fdc9be22481624180748f06f107e603a062c51b7ca7cf8603d6d97e11d64cd011ae7bd2696c8bf3659b9c625c84c479164a6171d5e8415
Size (biopython-1.74.tar.gz) = 16129257 bytes

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doc/CHANGES-2019
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@ -1,4 +1,4 @@
$NetBSD: CHANGES-2019,v 1.3378 2019/08/09 20:56:19 brook Exp $
$NetBSD: CHANGES-2019,v 1.3379 2019/08/09 21:52:34 brook Exp $
Changes to the packages collection and infrastructure in 2019:
@ -5501,3 +5501,4 @@ Changes to the packages collection and infrastructure in 2019:
Added www/R-miniUI version 0.1.1.1 [brook 2019-08-09]
Added graphics/R-colourpicker version 1.0 [brook 2019-08-09]
Added graphics/R-ggExtra version 0.8 [brook 2019-08-09]
Added biology/py-biopython version 1.74 [brook 2019-08-09]