From f2102ae42390e3a7b0ece42b9cb34485d5356740 Mon Sep 17 00:00:00 2001
From: jperkin <jperkin@pkgsrc.org>
Date: Mon, 19 Aug 2013 13:30:30 +0000
Subject: [PATCH] Texinfo 5.1 fixes.

---
 math/R/distinfo                              |  4 +-
 math/R/patches/patch-doc_manual_R-defs.texi  | 26 ++++++++++
 math/R/patches/patch-doc_manual_R-intro.texi | 53 ++++++++++++++++++++
 3 files changed, 82 insertions(+), 1 deletion(-)
 create mode 100644 math/R/patches/patch-doc_manual_R-defs.texi
 create mode 100644 math/R/patches/patch-doc_manual_R-intro.texi

diff --git a/math/R/distinfo b/math/R/distinfo
index f677f1768073..69af8a65f07c 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,10 +1,12 @@
-$NetBSD: distinfo,v 1.52 2013/08/13 19:53:30 markd Exp $
+$NetBSD: distinfo,v 1.53 2013/08/19 13:30:30 jperkin Exp $
 
 SHA1 (R-3.0.1.tar.gz) = 5cc65476837926fdf04105954ea94efa53ac85ce
 RMD160 (R-3.0.1.tar.gz) = 09910626891c2962b5c05d204b14d59444da0c3b
 Size (R-3.0.1.tar.gz) = 25508280 bytes
 SHA1 (patch-ac) = 25e54a7fc8934d2997ea2eff8836784b45ad2a45
 SHA1 (patch-ad) = 21c2f74ceb41afa72b0b268ba4b1dcb57f01e106
+SHA1 (patch-doc_manual_R-defs.texi) = 57ad7175cc1bba48bcc74d29c6f85c02a84e4891
+SHA1 (patch-doc_manual_R-intro.texi) = 592dbbe5e048f5bcbbb94fa3aec32ff2f0e321ba
 SHA1 (patch-src_library_stats_src_cov.c) = 23e452472506483ffc33a9c6629274b121cfd161
 SHA1 (patch-src_main_format.c) = f03012b8fbab34ead3f35143fe782ab7c7b29768
 SHA1 (patch-src_nmath_dnbeta.c) = f14c188a4b74a38cec9a62f5eb2ba1ab72ad52d3
diff --git a/math/R/patches/patch-doc_manual_R-defs.texi b/math/R/patches/patch-doc_manual_R-defs.texi
new file mode 100644
index 000000000000..07670270e07e
--- /dev/null
+++ b/math/R/patches/patch-doc_manual_R-defs.texi
@@ -0,0 +1,26 @@
+$NetBSD: patch-doc_manual_R-defs.texi,v 1.1 2013/08/19 13:30:30 jperkin Exp $
+
+Texinfo 5.1 fixes.
+
+--- doc/manual/R-defs.texi.orig	2013-04-03 22:05:07.000000000 +0000
++++ doc/manual/R-defs.texi
+@@ -17,16 +17,17 @@ S
+ @acronym{HTML}
+ @end macro
+ 
+-@macro eqn {t, a}
+ @iftex
++@macro eqn {t, a}
+ @tex
+ $\t\$%
+ @end tex
+ @end iftex
+ @ifnottex
++@macro eqn {t, a}
+ \a\@c
+-@end ifnottex
+ @end macro
++@end ifnottex
+ 
+ @macro pkg {p}
+ @strong{\p\}
diff --git a/math/R/patches/patch-doc_manual_R-intro.texi b/math/R/patches/patch-doc_manual_R-intro.texi
new file mode 100644
index 000000000000..90a75e74cf07
--- /dev/null
+++ b/math/R/patches/patch-doc_manual_R-intro.texi
@@ -0,0 +1,53 @@
+$NetBSD: patch-doc_manual_R-intro.texi,v 1.1 2013/08/19 13:30:30 jperkin Exp $
+
+Texinfo 5.1 fixes.
+
+--- doc/manual/R-intro.texi.orig	2013-04-03 22:05:07.000000000 +0000
++++ doc/manual/R-intro.texi
+@@ -1981,12 +1981,27 @@ is available, so we could have used @cod
+ @node Matrix facilities, Forming partitioned matrices, Generalized transpose of an array, Arrays and matrices
+ @section Matrix facilities
+ 
++@iftex
+ @macro xTx{}
+- @eqn{@strong{x}^T @strong{x}, x'x}
++@tex
++@strong{x}^T @strong{x}$%
++@end tex
+ @end macro
+ @macro xxT{}
+- @eqn{@strong{x}@strong{x}^T, x x'}
++@tex
++@strong{x}@strong{x}^T$%
++@endtex
+ @end macro
++@end iftex
++
++@ifnottex
++@macro xTx{}
++x'x
++@end macro
++@macro xxT{}
++x x'
++@end macro
++@end ifnottex
+ 
+ As noted above, a matrix is just an array with two subscripts.  However
+ it is such an important special case it needs a separate discussion.
+@@ -2106,10 +2121,12 @@ potentially unstable to compute @code{x
+ The quadratic form @eqn{@strong{x^T  A^{-1} x},@ @code{x %*% A^@{-1@} %*%
+ x} @ } which is used in multivariate computations, should be computed by
+ something like@footnote{Even better would be to form a matrix square
+-root @eqn{B, B} with @eqn{A = BB^T, A = BB'} and find the squared length of the
+-solution of @eqn{By = x, By = x}, perhaps using the Cholesky or
+-eigendecomposition of @eqn{A, A}.} @code{x %*% solve(A,x)}, rather than
+-computing the inverse of @code{A}.
++root @eqn{B, B}
++ with @eqn{A = BB^T, A = BB'}
++ and find the squared length of the solution of
++@eqn{By = x, By = x}
++, perhaps using the Cholesky or eigendecomposition of @eqn{A, A}.
++} @code{x %*% solve(A,x)}, rather than computing the inverse of @code{A}.
+ 
+ @node Eigenvalues and eigenvectors, Singular value decomposition and determinants, Linear equations and inversion, Matrix facilities
+ @subsection Eigenvalues and eigenvectors