Update MCSim to version 5.4.0
Changes are unknown, changelog is unavailable.
This commit is contained in:
asau
parent
a53ca6c50b
commit
fd643aa082
10 changed files with 110 additions and 488 deletions
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@ -1,33 +1,23 @@
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# $NetBSD: Makefile,v 1.19 2008/03/04 18:12:59 jlam Exp $
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# $NetBSD: Makefile,v 1.20 2011/05/09 20:59:10 asau Exp $
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DISTNAME= mcsim-4.2.0
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DISTNAME= mcsim-5.4.0
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CATEGORIES= math
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MASTER_SITES= ${MASTER_SITE_GNU:=mcsim/}
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MAINTAINER= pkgsrc-users@NetBSD.org
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HOMEPAGE= http://www.gnu.org/software/mcsim
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COMMENT= Monte Carlo Simulation software
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PKG_DESTDIR_SUPPORT= user-destdir
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GNU_CONFIGURE= yes
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USE_LIBTOOL= yes
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USE_TOOLS+= makeinfo
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INFO_FILES= # PLIST
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WRKSRC= ${WRKDIR}/mcsim
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INSTALLATION_DIRS= bin ${PKGINFODIR} share/doc/mcsim share/doc/html/mcsim
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REPLACE_SH= sim/makemcsim.in sim/makemcsimd.in sim/makemcsims.in
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post-build:
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cd ${WRKSRC}/doc && makeinfo mcsim.texinfo
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do-install:
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${INSTALL_PROGRAM} ${WRKSRC}/mod/mod ${DESTDIR}${PREFIX}/bin
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${INSTALL_PROGRAM} ${WRKSRC}/sim/mcsim ${DESTDIR}${PREFIX}/bin
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${INSTALL_DATA} ${WRKSRC}/doc/*.txt ${WRKSRC}/doc/MCSim* \
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${WRKSRC}/doc/mcsim.dvi ${DESTDIR}${PREFIX}/share/doc/mcsim/
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${INSTALL_DATA} ${WRKSRC}/doc/mcsim.html \
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${DESTDIR}${PREFIX}/share/doc/html/mcsim
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cd ${WRKSRC}/doc; for f in mcsim mcsim-[0-9]*; do \
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${TEST} ! -f "$$f" || \
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${INSTALL_DATA} "$$f" ${DESTDIR}${PREFIX}/${PKGINFODIR};\
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done
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TEST_TARGET= check
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.include "../../math/gsl/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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@ -1,13 +1,85 @@
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@comment $NetBSD: PLIST,v 1.6 2009/06/14 18:05:45 joerg Exp $
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bin/mcsim
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@comment $NetBSD: PLIST,v 1.7 2011/05/09 20:59:10 asau Exp $
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bin/makemcsim
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bin/makemcsimd
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bin/makemcsims
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bin/mod
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info/mcsim
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share/doc/html/mcsim/mcsim.html
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share/doc/mcsim/About-Datasets.txt
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share/doc/mcsim/About-Doc.txt
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share/doc/mcsim/About-MCSim.txt
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share/doc/mcsim/MCSim-changelog
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share/doc/mcsim/MCSim-to-do
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share/doc/mcsim/Manual-Update.txt
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share/doc/mcsim/Programming-notes.txt
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share/doc/mcsim/mcsim.dvi
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include/config.h
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include/hungtype.h
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include/lex.h
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include/lexfn.h
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include/list.h
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include/matutil.h
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include/modelu.h
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include/modiface.h
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include/random.h
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include/sim.h
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include/yourcode.h
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info/mcsim.info
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lib/libmcsim.la
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lib/libmodelu.la
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share/mcsim/doc/mcsim.pdf
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share/mcsim/doc/mcsim.ps
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share/mcsim/mod/getopt.c
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share/mcsim/mod/getopt.h
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share/mcsim/mod/hungtype.h
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share/mcsim/mod/lex.c
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share/mcsim/mod/lex.h
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share/mcsim/mod/lexerr.c
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share/mcsim/mod/lexerr.h
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share/mcsim/mod/lexfn.c
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share/mcsim/mod/lexfn.h
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share/mcsim/mod/mod.c
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share/mcsim/mod/mod.h
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share/mcsim/mod/modd.c
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share/mcsim/mod/modd.h
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share/mcsim/mod/modi.c
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share/mcsim/mod/modi.h
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share/mcsim/mod/modiSBML.c
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share/mcsim/mod/modiSBML.h
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share/mcsim/mod/modiSBML2.c
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share/mcsim/mod/modiface.h
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share/mcsim/mod/modo.c
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share/mcsim/mod/modo.h
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share/mcsim/mod/strutil.c
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share/mcsim/mod/strutil.h
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share/mcsim/sim/getopt.c
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share/mcsim/sim/getopt.h
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share/mcsim/sim/hungtype.h
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share/mcsim/sim/lex.c
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share/mcsim/sim/lex.h
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share/mcsim/sim/lexerr.c
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share/mcsim/sim/lexerr.h
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share/mcsim/sim/lexfn.c
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share/mcsim/sim/lexfn.h
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share/mcsim/sim/list.c
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share/mcsim/sim/list.h
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share/mcsim/sim/lsodes.h
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share/mcsim/sim/lsodes1.c
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share/mcsim/sim/lsodes2.c
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share/mcsim/sim/matutil.c
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share/mcsim/sim/matutil.h
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share/mcsim/sim/matutilo.c
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share/mcsim/sim/matutilo.h
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share/mcsim/sim/mh.c
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share/mcsim/sim/mh.h
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share/mcsim/sim/modelu.c
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share/mcsim/sim/modelu.h
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share/mcsim/sim/modiface.h
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share/mcsim/sim/optdsign.c
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share/mcsim/sim/optdsign.h
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share/mcsim/sim/random.c
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share/mcsim/sim/random.h
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share/mcsim/sim/sim.c
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share/mcsim/sim/sim.h
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share/mcsim/sim/simi.c
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share/mcsim/sim/simi.h
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share/mcsim/sim/siminit.c
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share/mcsim/sim/siminit.h
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share/mcsim/sim/simmonte.c
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share/mcsim/sim/simmonte.h
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share/mcsim/sim/simo.c
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share/mcsim/sim/simo.h
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share/mcsim/sim/strutil.c
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share/mcsim/sim/strutil.h
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share/mcsim/sim/yourcode.c
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share/mcsim/sim/yourcode.h
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@ -1,11 +1,6 @@
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$NetBSD: distinfo,v 1.3 2005/02/23 12:06:56 agc Exp $
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$NetBSD: distinfo,v 1.4 2011/05/09 20:59:10 asau Exp $
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SHA1 (mcsim-4.2.0.tar.gz) = 2ad29254cf40bb4ddadfc915e23e5d0eec90e2af
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RMD160 (mcsim-4.2.0.tar.gz) = 258884ed23500b1ee05c82012375595acf2e7e49
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Size (mcsim-4.2.0.tar.gz) = 521646 bytes
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SHA1 (patch-aa) = 993abbc45444214bf626eb2d41939860ae365e6c
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SHA1 (patch-ab) = 4d4d73af09fc96373c2255ff4a6a47bc3e556f27
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SHA1 (patch-ac) = a43fc2826a5b818579a536f5155b799001d180f8
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SHA1 (patch-ad) = 98e453e77d6b403464e3dfabfa84a4fa5992b3ad
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SHA1 (patch-ae) = 819a304489151e2f4c92f70e9425cd85da936daf
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SHA1 (patch-af) = cd2990081687b81e21af53379a8f682040ada0dd
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SHA1 (mcsim-5.4.0.tar.gz) = 63a9b9fd22869f49bb92dbbf5e90e8320571b8a1
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RMD160 (mcsim-5.4.0.tar.gz) = 7294cdac918fef2e0e52b4e0c226492af7423fd2
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Size (mcsim-5.4.0.tar.gz) = 1840057 bytes
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SHA1 (patch-Makefile.in) = 9d4e0a8b716d41a6e9c046909bc69ec8ff2a9749
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13
math/mcsim/patches/patch-Makefile.in
Normal file
13
math/mcsim/patches/patch-Makefile.in
Normal file
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@ -0,0 +1,13 @@
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$NetBSD: patch-Makefile.in,v 1.1 2011/05/09 20:59:10 asau Exp $
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--- Makefile.in.orig 2011-01-29 15:52:31.000000000 +0000
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+++ Makefile.in
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@@ -481,7 +481,7 @@ check-TESTS: $(TESTS)
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if test -f ./$$tst; then dir=./; \
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elif test -f $$tst; then dir=; \
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else dir="$(srcdir)/"; fi; \
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- if $(TESTS_ENVIRONMENT) $${dir}$$tst; then \
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+ if $(TESTS_ENVIRONMENT) $(SHELL) $${dir}$$tst; then \
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all=`expr $$all + 1`; \
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case " $(XFAIL_TESTS) " in \
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*[\ \ ]$$tst[\ \ ]*) \
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@ -1,20 +0,0 @@
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$NetBSD: patch-aa,v 1.1.1.1 2000/11/26 23:02:38 jtb Exp $
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--- doc/mcsim.texinfo.orig Sat Nov 15 02:14:40 1997
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+++ doc/mcsim.texinfo
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@@ -1,10 +1,14 @@
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\input texinfo @c -*-texinfo-*-
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@comment %**start of header (This is for running Texinfo on a region.)
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-@setfilename mcsimdoc
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+@setfilename mcsim
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@settitle MCSim User' Manual
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@setchapternewpage odd
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@comment %**end of header (This is for running Texinfo on a region.)
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+@dircategory Monte Carlo Simulation
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+@direntry
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+* MCSim: (mcsim). A Monte Carlo Simulation Program.
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+@end direntry
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@comment the following is just for the texinfo file
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@ifinfo
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@ -1,70 +0,0 @@
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$NetBSD: patch-ab,v 1.2 2001/02/25 22:14:20 jtb Exp $
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--- mod/Makefile.orig Thu Mar 6 16:14:37 1997
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+++ mod/Makefile
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@@ -77,16 +77,16 @@
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# `realclean' removes other stuff not distributed
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#
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-
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+all: mod
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#---------- System Calls ----------
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#
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#>>>> Define any system dependent calls here
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-ECHO = echo
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-COPY = cp
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-DEL = rm
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-MKDIR = mkdir
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+ECHO ?= echo
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+COPY ?= cp
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+DEL ?= rm -f
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+MKDIR ?= mkdir
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ARC = tar
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ARCFLAGS = cvf
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MOD = mod
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@@ -97,8 +97,8 @@
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#
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#>>>> Define the COMPILER name and LINKER name here only.
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-CC = gcc
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-LINK = gcc
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+#CC =
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+LINK = $(CC)
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#>>>> Define PATHS
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# The include path should be a directory containing header
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@@ -137,27 +137,27 @@
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#>>>> To compile with OPTIMIZATION uncomment the following lines
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#
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DEBUG_SYMBOLS = -DNDEBUG
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-C_OPTIM_FLAG = -O
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+C_OPTIM_FLAG =
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L_OPTIM_FLAG =
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#
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#>>>> Include any special warning flags
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#
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-WARNINGS = -Wall
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+WARNINGS = -ansi
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#--------------------
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#**** You shouldn't need to change these lines. They are dependent
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#**** only on the above setup.
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-CFLAGS = $(C_OPTIM_FLAG) $(C_DEBUG_FLAG) $(DEBUG_SYMBOLS) \
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+CFLAGS += $(C_OPTIM_FLAG) $(C_DEBUG_FLAG) $(DEBUG_SYMBOLS) \
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-I $(INCPATH) $(WARNINGS) -DMODGEN
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-CLFLAGS = $(L_OPTIM_FLAG) $(L_DEBUG_FLAG)
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+CLFLAGS += $(L_OPTIM_FLAG) $(L_DEBUG_FLAG)
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#
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#>>>> Extra link flags. Include libraries here
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#
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-LFLAGS = -lm
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+LFLAGS += -lm
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@ -1,69 +0,0 @@
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$NetBSD: patch-ac,v 1.2 2001/02/25 22:14:20 jtb Exp $
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--- sim/Makefile.orig Fri Nov 14 15:45:53 1997
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+++ sim/Makefile
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@@ -46,14 +46,16 @@
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# LFLAGS : any flags specific to the linker.
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#
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+all: mcsim
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+
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#---------- System Calls ----------
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#
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#>>>> Define any system dependent calls here
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-ECHO = echo
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-COPY = cp
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-DEL = rm
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-MKDIR = mkdir
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+ECHO ?= echo
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+COPY ?= cp
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+DEL ?= rm
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+MKDIR ?= mkdir
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MOD = mod
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@@ -62,8 +64,8 @@
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#
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#>>>> Define the COMPILER name and LINKER name here only.
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-CC = gcc
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-LINK = gcc
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+#CC = gcc
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+LINK = $(CC)
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#>>>> Define PATHS
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# The include path should be a directory containing header
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@@ -101,27 +103,27 @@
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#>>>> To compile with OPTIMIZATION uncomment the following lines
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#
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DEBUG_SYMBOLS = -DNDEBUG
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-C_OPTIM_FLAG = -O
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+C_OPTIM_FLAG =
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L_OPTIM_FLAG =
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#
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#>>>> Include any special warning flags
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#
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-WARNINGS = -Wall -ansi
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+WARNINGS = -ansi
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#--------------------
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#**** You shouldn't need to change the next 2 lines. They are dependent
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#**** only on the above setup.
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-CFLAGS = $(C_OPTIM_FLAG) $(C_DEBUG_FLAG) $(DEBUG_SYMBOLS) \
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+CFLAGS += $(C_OPTIM_FLAG) $(C_DEBUG_FLAG) $(DEBUG_SYMBOLS) \
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-I $(INCPATH) $(WARNINGS)
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-CLFLAGS = $(L_OPTIM_FLAG) $(L_DEBUG_FLAG)
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+CLFLAGS += $(L_OPTIM_FLAG) $(L_DEBUG_FLAG)
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#
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#>>>> Extra link flags. Include libraries here
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#
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-LFLAGS = -lm
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+LFLAGS += -lm
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@ -1,22 +0,0 @@
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$NetBSD: patch-ad,v 1.2 2001/02/25 22:14:20 jtb Exp $
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--- sim/sim.c.orig Wed Nov 22 22:45:45 2000
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+++ sim/sim.c
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@@ -653,7 +653,7 @@
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scanf ("%[^:\f\r\v\n]", *pszFileIn);
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getchar();
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#else
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- gets (*pszFileIn);
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+ fgets (*pszFileIn, sizeof(*pszFileIn), stdin);
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*pszFileIn = strtok (*pszFileIn, " \t");
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#endif
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@@ -665,7 +665,7 @@
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#ifdef _MACOSLEVEL1_
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scanf ("%[^:\f\r\v\n]", *pszFileOut);
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#else
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- gets (*pszFileOut);
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+ fgets (*pszFileOut, sizeof(*pszFileOut), stdin);
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*pszFileOut = strtok (*pszFileOut, " \t");
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#endif
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}
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@ -1,259 +0,0 @@
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$NetBSD: patch-ae,v 1.1.1.1 2000/11/26 23:02:41 jtb Exp $
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--- sim/Test_mcsim.orig Fri Nov 14 15:45:56 1997
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+++ sim/Test_mcsim
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@@ -1,147 +1,147 @@
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# Run diagnostic tests on several features of the program.
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# results are compared to prepared files.
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-one:
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- @echo
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- @echo ----------
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- @echo
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- @echo '* Testing MCSim: this could take a few minutes.'
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- @echo '* Creating logfile mcsim.log'
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- @touch mcsim.log
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- @date >> mcsim.log
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-#
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- @echo
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- @echo ----------
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- @echo
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- @echo Testing with the tetrachloroethylene model
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- @mod perc.model
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- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
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||||
- @gcc -o mcsim *.o -lm
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||||
- @echo
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||||
+#one:
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||||
+ echo
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||||
+ echo ----------
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||||
+ echo
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+ echo '* Testing MCSim: this could take a few minutes.'
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||||
+ echo '* Creating logfile mcsim.log'
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+ touch mcsim.log
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+ date >> mcsim.log
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+#
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+ echo
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+ echo ----------
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+ echo
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+ echo Testing with the tetrachloroethylene model
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+ ../mod/mod perc.model
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+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
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+ cc -o mcsim *.o -lm
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+ echo
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#
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# perc.lsodes.in
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- @echo Testing Lsodes with perc.lsodes.in ...
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- @chmod -w perc.lsodes.in perc.lsodes.out
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- @mcsim perc.lsodes.in sim.out >> mcsim.log
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- @(diff sim.out perc.lsodes.out > .tmp) && echo '-PASSED-'
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+ echo Testing Lsodes with perc.lsodes.in ...
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+ chmod -w perc.lsodes.in perc.lsodes.out
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+ ./mcsim perc.lsodes.in sim.out >> mcsim.log
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+ (diff sim.out perc.lsodes.out > .tmp) && echo '-PASSED-'
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#
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# perc.ndoses.in
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- @echo Testing NDoses with perc.ndoses.in ...
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- @chmod -w perc.ndoses.in perc.ndoses.out
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- @mcsim perc.ndoses.in sim.out >> mcsim.log
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- @(diff sim.out perc.ndoses.out > .tmp) && echo '-PASSED-'
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+ echo Testing NDoses with perc.ndoses.in ...
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+ chmod -w perc.ndoses.in perc.ndoses.out
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+ ./mcsim perc.ndoses.in sim.out >> mcsim.log
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+ (diff sim.out perc.ndoses.out > .tmp) && echo '-PASSED-'
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#
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# perc.mtc.in
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- @echo Testing Monte Carlo with perc.mtc.in ...
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- @chmod -w perc.mtc.in perc.mtc.out
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- @mcsim perc.mtc.in sim.out >> mcsim.log
|
||||
- @(diff sim.out perc.mtc.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing Monte Carlo with perc.mtc.in ...
|
||||
+ chmod -w perc.mtc.in perc.mtc.out
|
||||
+ ./mcsim perc.mtc.in sim.out >> mcsim.log
|
||||
+ (diff sim.out perc.mtc.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# perc.setpoint.in
|
||||
- @echo Testing Set Point run with perc.setpoint.in ...
|
||||
- @chmod -w perc.setpoint.dat perc.setpoint.in perc.setpoint.out
|
||||
- @mcsim perc.setpoint.in sim.out >> mcsim.log
|
||||
- @(diff sim.out perc.setpoint.out > .tmp) && echo '-PASSED-'
|
||||
-#
|
||||
- @echo
|
||||
- @echo ----------
|
||||
- @echo
|
||||
- @echo Testing with the 1 compartment model
|
||||
- @mod 1cpt.model
|
||||
- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
|
||||
- @gcc -o mcsim *.o -lm
|
||||
- @echo
|
||||
+ echo Testing Set Point run with perc.setpoint.in ...
|
||||
+ chmod -w perc.setpoint.dat perc.setpoint.in perc.setpoint.out
|
||||
+ ./mcsim perc.setpoint.in sim.out >> mcsim.log
|
||||
+ (diff sim.out perc.setpoint.out > .tmp) && echo '-PASSED-'
|
||||
+#
|
||||
+ echo
|
||||
+ echo ----------
|
||||
+ echo
|
||||
+ echo Testing with the 1 compartment model
|
||||
+ ../mod/mod 1cpt.model
|
||||
+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
|
||||
+ cc -o mcsim *.o -lm
|
||||
+ echo
|
||||
#
|
||||
# 1cpt_no_noise.in
|
||||
- @echo Testing Lsodes non random output with 1cpt_no_noise.in ...
|
||||
- @chmod -w 1cpt_no_noise.in 1cpt_no_noise.out
|
||||
- @mcsim 1cpt_no_noise.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt_no_noise.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing Lsodes non random output with 1cpt_no_noise.in ...
|
||||
+ chmod -w 1cpt_no_noise.in 1cpt_no_noise.out
|
||||
+ ./mcsim 1cpt_no_noise.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt_no_noise.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt_w._noise.in
|
||||
- @echo Testing Lsodes randomized output with 1cpt_w._noise.in ...
|
||||
- @chmod -w 1cpt_w._noise.in 1cpt_w._noise.out
|
||||
- @mcsim 1cpt_w._noise.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt_w._noise.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing Lsodes randomized output with 1cpt_w._noise.in ...
|
||||
+ chmod -w 1cpt_w._noise.in 1cpt_w._noise.out
|
||||
+ ./mcsim 1cpt_w._noise.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt_w._noise.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt.MCMC1.in
|
||||
- @echo Testing MCMC set uncertainties with 1cpt.MCMC1.in ...
|
||||
- @chmod -w 1cpt.MCMC1.in 1cpt.MCMC1.out
|
||||
- @mcsim 1cpt.MCMC1.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC set uncertainties with 1cpt.MCMC1.in ...
|
||||
+ chmod -w 1cpt.MCMC1.in 1cpt.MCMC1.out
|
||||
+ ./mcsim 1cpt.MCMC1.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt.MCMC2.in
|
||||
- @echo Testing MCMC estimated uncertainties with 1cpt.MCMC2.in ...
|
||||
- @chmod -w 1cpt.MCMC2.in 1cpt.MCMC2.out
|
||||
- @mcsim 1cpt.MCMC2.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC estimated uncertainties with 1cpt.MCMC2.in ...
|
||||
+ chmod -w 1cpt.MCMC2.in 1cpt.MCMC2.out
|
||||
+ ./mcsim 1cpt.MCMC2.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt.MCMC3.in
|
||||
- @echo Testing MCMC print every 2 iterations with 1cpt.MCMC3.in ...
|
||||
- @chmod -w 1cpt.MCMC3.in 1cpt.MCMC3.out
|
||||
- @mcsim 1cpt.MCMC3.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt.MCMC3.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC print every 2 iterations with 1cpt.MCMC3.in ...
|
||||
+ chmod -w 1cpt.MCMC3.in 1cpt.MCMC3.out
|
||||
+ ./mcsim 1cpt.MCMC3.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt.MCMC3.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt.MCMC4.in
|
||||
- @echo Testing MCMC estimated bounds on F with 1cpt.MCMC4.in ...
|
||||
- @chmod -w 1cpt.MCMC4.in 1cpt.MCMC4.out
|
||||
- @mcsim 1cpt.MCMC4.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt.MCMC4.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC estimated bounds on F with 1cpt.MCMC4.in ...
|
||||
+ chmod -w 1cpt.MCMC4.in 1cpt.MCMC4.out
|
||||
+ ./mcsim 1cpt.MCMC4.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt.MCMC4.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# 1cpt.MCMC5.in
|
||||
- @echo Testing MCMC model-computed SDs with 1cpt.MCMC5.in ...
|
||||
- @chmod -w 1cpt.MCMC5.in 1cpt.MCMC5.out
|
||||
- @mcsim 1cpt.MCMC5.in sim.out >> mcsim.log
|
||||
- @(diff sim.out 1cpt.MCMC5.out > .tmp) && echo '-PASSED-'
|
||||
-#
|
||||
- @echo
|
||||
- @echo ----------
|
||||
- @echo
|
||||
- @echo Testing with the linear model
|
||||
- @mod linear.model
|
||||
- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
|
||||
- @gcc -o mcsim *.o -lm
|
||||
- @echo
|
||||
+ echo Testing MCMC model-computed SDs with 1cpt.MCMC5.in ...
|
||||
+ chmod -w 1cpt.MCMC5.in 1cpt.MCMC5.out
|
||||
+ ./mcsim 1cpt.MCMC5.in sim.out >> mcsim.log
|
||||
+ (diff sim.out 1cpt.MCMC5.out > .tmp) && echo '-PASSED-'
|
||||
+#
|
||||
+ echo
|
||||
+ echo ----------
|
||||
+ echo
|
||||
+ echo Testing with the linear model
|
||||
+ ../mod/mod linear.model
|
||||
+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
|
||||
+ cc -o mcsim *.o -lm
|
||||
+ echo
|
||||
#
|
||||
# linear.in
|
||||
- @echo Testing Lsodes with linear.in ...
|
||||
- @chmod -w linear.in linear.out
|
||||
- @mcsim linear.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing Lsodes with linear.in ...
|
||||
+ chmod -w linear.in linear.out
|
||||
+ ./mcsim linear.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# linear.MCMC1.in
|
||||
- @echo Testing MCMC 1 experiment with linear.MCMC1.in ...
|
||||
- @chmod -w linear.MCMC1.in linear.MCMC1.out
|
||||
- @mcsim linear.MCMC1.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC 1 experiment with linear.MCMC1.in ...
|
||||
+ chmod -w linear.MCMC1.in linear.MCMC1.out
|
||||
+ ./mcsim linear.MCMC1.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# linear.MCMC2.in
|
||||
- @echo Testing MCMC 1 repeated experiment with linear.MCMC2.in ...
|
||||
- @chmod -w linear.MCMC2.in linear.MCMC2.out
|
||||
- @mcsim linear.MCMC2.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
+ echo Testing MCMC 1 repeated experiment with linear.MCMC2.in ...
|
||||
+ chmod -w linear.MCMC2.in linear.MCMC2.out
|
||||
+ ./mcsim linear.MCMC2.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# linear.H.MCMC1.in
|
||||
- @echo Testing MCMC hierarchical linear model, 10 exps with \
|
||||
+ echo Testing MCMC hierarchical linear model, 10 exps with \
|
||||
linear.H.MCMC1.in ...
|
||||
- @chmod -w linear.H.MCMC1.in linear.H.MCMC1.out
|
||||
- @mcsim linear.H.MCMC1.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.H.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
+ chmod -w linear.H.MCMC1.in linear.H.MCMC1.out
|
||||
+ ./mcsim linear.H.MCMC1.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.H.MCMC1.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# linear.H.MCMC2.in
|
||||
- @echo Testing MCMC hierarchical linear model, B1.1 set with \
|
||||
+ echo Testing MCMC hierarchical linear model, B1.1 set with \
|
||||
linear.H.MCMC2.in
|
||||
- @chmod -w linear.H.MCMC2.in linear.H.MCMC2.out
|
||||
- @mcsim linear.H.MCMC2.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.H.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
+ chmod -w linear.H.MCMC2.in linear.H.MCMC2.out
|
||||
+ ./mcsim linear.H.MCMC2.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.H.MCMC2.out > .tmp) && echo '-PASSED-'
|
||||
#
|
||||
# linear.H.MCMC3.in
|
||||
- @echo Testing MCMC hierarchical model, restart file with \
|
||||
+ echo Testing MCMC hierarchical model, restart file with \
|
||||
linear.H.MCMC3.in
|
||||
- @chmod -w linear.H.MCMC3.in linear.H.MCMC3.out
|
||||
- @mcsim linear.H.MCMC3.in sim.out >> mcsim.log
|
||||
- @(diff sim.out linear.H.MCMC3.out > .tmp) && echo '-PASSED-'
|
||||
-#
|
||||
- @echo
|
||||
- @echo Hourra!
|
||||
- @echo MCSim passed all tests.
|
||||
+ chmod -w linear.H.MCMC3.in linear.H.MCMC3.out
|
||||
+ ./mcsim linear.H.MCMC3.in sim.out >> mcsim.log
|
||||
+ (diff sim.out linear.H.MCMC3.out > .tmp) && echo '-PASSED-'
|
||||
+#
|
||||
+ echo
|
||||
+ echo Hourra!
|
||||
+ echo MCSim passed all tests.
|
||||
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
$NetBSD: patch-af,v 1.1 2001/02/25 22:14:20 jtb Exp $
|
||||
|
||||
--- /dev/null Sun Feb 25 21:54:22 2001
|
||||
+++ Makefile
|
||||
@@ -0,0 +1,3 @@
|
||||
+SUBDIR = mod sim
|
||||
+
|
||||
+.include <bsd.subdir.mk>
|
||||
Loading…
Reference in a new issue