Commit graph

19078 commits

Author SHA1 Message Date
tron
bc5f39aabd Update "communicator" package to version 4.77. This version fixes bugs,
closes security problems and updates the certificate list.
2001-04-07 07:31:10 +00:00
rh
6f6a05851b Update glade to 0.6.2. Changes include minor bug fixes, bonobo support,
and updated translations.
2001-04-07 06:40:13 +00:00
rh
5015037a54 Update ggv to 1.0. Changes include several new features, a minor graphical
redesign, bonobo support, and tons of bugfixes.
2001-04-07 06:22:10 +00:00
rh
d6c8f92f65 sync w/ reality 2001-04-07 05:55:56 +00:00
tron
2ad2ae9c39 Fix thinko in last commit. 2001-04-07 04:32:40 +00:00
kim
1565b8fced Make the message tell the truth. 2001-04-07 02:01:26 +00:00
kim
00cae3ece0 Add optional setting for placing the default mailbox in the user home dir. 2001-04-07 01:53:23 +00:00
jwise
2f9af9bf60 Add a MAINTAINER field. 2001-04-06 23:48:49 +00:00
kim
f5c6ebd6fd Removed the post-patch target as it had no effect and just
confuses people (or at least me).
2001-04-06 22:53:15 +00:00
mjl
1cc769426f Enable p5-Memoize 2001-04-06 22:43:08 +00:00
mjl
648ccd7c50 Import p5-Memoize, a module to transparently speed up functions
by caching return values
2001-04-06 22:42:06 +00:00
rh
824d9c16fa Update esound to 0.2.22. Changes include:
o  esd supports for multiple recording clients
        - multiple esd_record_stream or esd_record_stream_fallback can
        now run simultaneously

o  security improvements
        - you should upgrade to 0.2.21 - older version have security
        holes, which can compromite account of any esd user
2001-04-06 22:41:37 +00:00
rh
6756f91771 Update gnome-core to 1.4.0.1
Changes are:

2001-03-28  Dan Mueth  <dan@eazel.com>

        Linking GNOME hint capplet to doc

        * gnome-hint/gnome-hint-properties.c: (help):

2001-03-26  Darin Adler  <darin@eazel.com>

        * omf-install/.cvsignore: Quick fix to ignore .omf files.

2001-03-25  Dan Mueth  <dan@eazel.com>

        Updated index page for gnome-help-browser to point to current
        GNOME User's Guide.

2001-03-25  Jens Finke <jens@gnome.org>

        * gnome.spec.in: Include gnome-terminal datadir stuff. Make use
        of rpm macros.

2001-03-23  Yukihiro Nakai  <nakai@gnome.gr.jp>

        * configure.in: Generate Makefile of Japanese gsm help.

2001-03-23  Dan Mueth  <dan@eazel.com>

        Fixed error in metadata, placing it in the wrong locale.

        * panel/help/ja/panel-ja.omf:

2001-03-22  Dan Mueth  <dan@eazel.com>

        A couple bug fixes from the previous huge commit.

        * applets/desk-guide/help/C/Makefile.am:
        * applets/desk-guide/help/de/Makefile.am:

2001-03-22  Dan Mueth  <dan@eazel.com>

        Updating doc build stuff to use sgmldocs.make.  Making sure
        screenshots are in figures directory.  A few other small
        doc fixes.

2001-03-20  Dan Mueth  <dan@eazel.com>

        Update some of the build stuff to the latest state of
        OMF/SK system.  Plus, added ScrollKeeper stuff into configure.in
        and added sgmldocs.make so we can start using that to stay
        uniform with other packages.

2001-03-09  Kjartan Maraas  <kmaraas@gnome.org>

        * configure.in: Generate Makefile for the japanese panel docs.

2001-03-07  jacob berkman  <jacob@ximian.com>

        * pixmaps: use some of tigert's nice icons

Tue Mar 06 18:36:33 2001  George Lebl <jirka@5z.com>

        * configure.in, acconfig.h:  Add a with argument for the KDE
          documentation path

2001-03-02  Christian Schaller <Uraeus@linuxrising.org>
        * Norwegian Nynorsk translation

2001-02-28  Martin Baulig  <baulig@suse.de>

        * configure.in (configure.in): Added applets/gen_util/help/es.

Tue Feb 27 02:15:15 2001  George Lebl <jirka@5z.com>

        * configure.in: give a useful message when the canvas gdkpixbuf
          thingie isn't found

2001-02-26  Dan Mueth  <dan@eazel.com>

        Include FDL as required by the FDL, and l10n of categories for
        OMF metadata.

        * COPYING-DOCS: Added this file - the FDL
        * Makefile.am: Include COPYING-DOCS
        * applets/fish/help/no/fish_applet-no.omf: l10n of category
        * applets/gen_util/help/no/gen_util_applet-no.omf: l10n of category

2001-02-25  Gediminas Paulauskas <menesis@delfi.lt>

        * configure.in: don't create grdb Makefiles.

2001-02-19  Dan Mueth   <dan@eazel.com>

        * Localized categories in OMF metadata for:
                applets/fish/help/da/fish_applet-da.omf
                applets/gen_util/help/da/clock/clock_applet-da.omf
                applets/gen_util/help/da/mailcheck/mailcheck_applet-da.omf
                applets/gen_util/help/da/printer/printer_applet-da.omf
                gnome-terminal/es/gnome-termainal-es.omf

Sat Feb 17 23:28:01 2001  George Lebl <jirka@5z.com>

        * gnome-core.spec.in:  update so that /var/lib files are installed
          properly

2001-02-15  Dan Mueth   <dan@eazel.com>

        * omf-install/Makefile.am: Changed to install under
          $(datadir)/omf/ instead of $(prefix)/doc/omf because
          this is The Right Way, and scrollkeeper was recently fixed
          to work this way.

2001-02-14  Christophe Merlet  <redfox@eikonex.org>

        * */*.desktop: Updated French translations.

2001-02-13  Dan Mueth   <dan@eazel.com>
        * core-docs/lgpl/C/lgpl.sgml: Added a </para> to make it
          validate with nsgmls and produce a valid TOC.  Now it has
          an extra <para> somewhere, which is lame, but at least
          it validates and makes a good TOC. Finding the extra
          <para> and removing it is left as an excercise for the reader.

        * applet-docs.make: Less broken OMF bits than before

2001-02-13  Dan Mueth   <dan@eazel.com>

        * app-docs.make: Fixed(TM)
        * applet-docs.make: Fixed(TM)

2001-02-13  Dan Mueth   <dan@eazel.com>

        * applet-docs.make: fixing previous non-fix
        * app-docs.make: fixing previous non-fix

2001-02-13  Dan Mueth   <dan@eazel.com>

        * OMF files: Updated to new category list in scrollkeeper-0.0.6

2001-02-12  Dan Mueth   <dan@eazel.com>

        * applet-docs.make: Fixed to do directories without OMF files
          correctly.

2001-02-12  Dan Mueth   <dan@eazel.com>

        * app-docs.make: Fixed to do directories without OMF files
          correctly.

2001-02-08  Kjartan Maraas  <kmaraas@gnome.org>

        * configure.in: Added Norwegian (nynorsk) to ALL_LINGUAS.

2001-02-06  Dan Mueth   <dan@eazel.com>

        * Commented out the OMF files for 3 translations of gnome-terminal
          because the SGML is broken, preventing TOC extraction

2001-02-06  Dan Mueth   <dan@eazel.com>

        * Modified Makefile.am's to register the new OMF files
        * Added many OMF files:
                applets/desk-guide/help/C/desk-guide_applet-C.omf
                applets/desk-guide/help/de/desk-guide_applet-de.omf
                applets/fish/help/C/fish_applet-C.omf
                applets/fish/help/da/fish_applet-da.omf
                applets/fish/help/no/fish_applet-no.omf
                applets/gen_util/help/C/clock/clock_applet-C.omf
                applets/gen_util/help/C/mailcheck/mailcheck_applet-C.omf
                applets/gen_util/help/C/printer/printer_applet-C.omf
                applets/gen_util/help/da/clock/clock_applet-da.omf
                applets/gen_util/help/da/mailcheck/mailcheck_applet-da.omf
                applets/gen_util/help/da/printer/printer_applet-da.omf
                applets/gen_util/help/de/clock-de.omf
                applets/gen_util/help/de/gen_util_applet-de.omf
                applets/gen_util/help/de/mailcheck-de.omf
                applets/gen_util/help/no/mailcheck-no.omf
                applets/gen_util/help/no/gen_util_applet-no.omf
                applets/tasklist/help/C/tasklist_applet-C.omf
                core-docs/fdl/C/fdl-C.omf
                core-docs/gpl/C/gpl-C.omf
                core-docs/lgpl/C/lgpl-C.omf
                gnome-terminal/C/gnome-terminal-C.omf
                gnome-terminal/da/gnome-terminal-da.omf
                gnome-terminal/de/gnome-terminal-de.omf
                gnome-terminal/es/gnome-terminal-es.omf
                gnome-terminal/it/gnome-terminal-it.omf
                gnome-terminal/no/gnome-terminal-no.omf
                gsm/help/C/session-C.omf
                panel/help/C/panel-C.omf
                panel/help/de/panel-de.omf
                panel/help/it/panel-it.omf
                panel/help/no/panel-no.omf


2001-02-06  Dan Mueth   <dan@eazel.com>

        * po/POTFILES.in: Removed lines for mini-commander.  It seems that
          mini-commander is now in gnome-applets, so having these two lines
          was breaking the build.

2001-02-06  Dan Mueth   <dan@eazel.com>

        (initial setup of SK - just doing for Panel Manual for now)
        * omf-install/: created this directory
        * omf-install/Makefile.am: new
        * app-docs.make: updated for scrollkeeper(SK)
        * applet-docs.make: updated for scrollkeeper(SK)
        * configure.in: updated for scrollkeeper(SK)
        * Makefile.am: updated for scrollkeeper(SK)
        * panel/help/C/panel-C.omf: added
        * panel/help/C/Makefile.am: updated for SK

2001-02-05  Eric Baudais  <baudais@okstate.edu>
        * configure.in: Added core-docs/lgpl/Makefile and
        core-docs/lgpl/C/Makefile to AC_OUPUT.

2001-02-04  jacob berkman  <jacob@ximian.com>

        * Makefile.am:
        * configure.in:
        * grdb: remove grdb

Sat Feb 03 19:36:34 2001  George Lebl <jirka@5z.com>

        * Makefile.am:  Cleanup some OOOOOOOLD cruft

        * configure.in, Makefile.am, po/POTFILES.in, grdb/**/*:
          Integrate grdb.  The author fell of the face of the planet and
          didn't integrate it as was planned apparently, so here it goes,
          still needs to get called from gsm, and either control-center
          or something else monitoring theme changes

Wed Jan 31 20:36:25 2001  George Lebl <jirka@5z.com>

        * configure.in:  s/Gnumeric/gnome-core/  fix some cut'n'paste fun

2001-01-26  Marius Andreiana  <mandreiana@yahoo.com>

        * configure.in: Added ro (Romanian) to ALL_LINGUAS.
2001-04-06 22:25:04 +00:00
rh
7fddc80123 Update gtkhtml to 0.8.3
Changes include:

General:

 - Fixed X selections so that we no longer try to pass UTF-8 encoded text
   in STRING atoms.

 - Improved the table layout code so that now we render tables very close
   to the big name browsers, one or two small issues left

 - Added many missing attributes to the HTML export code so that at least
   we pass on the attributes we understand.

 - Support for sub sup and strike elements.

 - We now parse param elements before emitting the object requested signal
   so that we can make an informed choice about whether or not the object is
   supported.

Editor:

 - We now hook to the gnome-spell component to do spelling.

 - Rename the idl and oafinfo to bring us in line with the new naming
   conventions

 - The editor control now exposes an interface for issuing editor commands

Ebrowser:

 - New component to support simple browsing tasks.
2001-04-06 22:21:09 +00:00
rh
f09db9e6c6 Update gal to 0.5nb1 fixing up dependencies, mainly to avoid circular
dependencies between gal and gnome-core>=1.4.0
2001-04-06 22:19:16 +00:00
rh
a224f6d78e Update bonobo to 0.37.
Changes include:

Bonobo 0.37

        * Fix Bonobo Zoomable (Michael Engber)

        * Documentation fixage (John Sheets)

        * Any serialization xml supports aliases (Dietmar)

        * Listener / Event Source fixes (Dan Winship)

        * Bonobo Control fixage (Dan Winship)

        * UI str compare fixage (Darin Adler)

        * Cleanup config dialog (Cody Russell)

        * Publicised XObject type & bits (Me)

Bonobo 0.36

        * Convert print to BonoboXObject (Me) - forgot it.

        * Fix flicker issue (Me)

        * Remove bonobo-idl (Me)

        * Use nice type creation macro (Dietmar)

        * Toolbar control leak fix (Maciej)

Bonobo 0.35

        * BonoboXObject (Me)

        * Canvas fixes (Mike Kestner)
                * IDL cleanups
                * Misc bug fixage

        * UI handler
                * Toolbar shadow preference fix (Federico Mena)
                * Toolbar sizing problems (Ettore)
                * Builtin toolbar customization GUI & popup (Me)
                * UI configuration code (Me)
                * UI Menu rebuild acceleration (Me)
                * UI config Leak fixes (Iain)
                * Toolbar resize bug (Cody Russell)
                * Tearoff menu fixage (Me, Darin Adler)

        * Monikers
                * comparison method (Me)
                * stream cache moniker (Dietmar)

        * Misc new features
                * Use a Stream to transfer print data (Me)
                * Re-namespace IDL files (Me)
                * Property bag fixage (Dietmar)
                * Automatic shlib reference tracking (Dietmar)
                * Profiling config support (Pavel Cisler)
                * Zoomable interface expansion (Cody Russell)

        * Misc bug fixing
                * Leak fixes (Morten, Me)
                * Method chaining bugs (Me)
                * Depend on oaf >= 0.6.2 (Me)
                * LibIDL checks for bonobo-idl (Me)
                * Fix bonobo-idl build (Me)
                * function signature fix (George Lebl)
                * Stream moniker extender fix (Lutz Muller)
                * Calm ORBit warnings (Maciej Stachowiak)

        * Reference counting problems nailed (Owen, Me)

        * Begginings of keyboard focus fixage (Federico)

Bonobo 0.33

        * Fixed broken standard moniker id (Me)

        * Fix UI verb tracking leak (Me)

        * Fix old UI race condition (Me)

Bonobo 0.32

        * Monikers
                * Virtualized more of BonoboMoniker (Me)
                * Item container re-written (Me)
                * Item handler implemented (Miguel)

        * UI stuff (Me)
                * Substantialy re-factored
                * Acceleration (with Pavel)
                * Configuration engine
                * Toolbar customization dialog
                * Ignore Gtk+ keybinding assignment
                * Hide lots of internals
                * Docs updated
                * honour more GNOME prefs (Jacob)

        * Property Bag (Dietmar)
                * Improved exception handling
                * Reference leaks fixed
                * new Property listener methods
                * Property is an Unknown

        * Canvas Items (Mike Kestner)
                * Add event signal
                * Add grab / ungrab
                * Fix UI merging code
                * Update proxy creation

        * Fixed reference handling on addInterface (Dietmar)

        * Event Source updated (Dietmar)

        * Several reference leaks nailed (Dietmar)

        * Improved running context ref tracking (Dietmar)

        * Macros to reduce code complexity (Dietmar)

        * Header include cleanups (Jason Leach)

        * Conversion to xml-i18n-tools (Maciej)

        * Misc. bugs fixed (Darin, Eskil Olsen, Robin Slomkowski)

Bonobo 0.31

        * Serious bugs fixed
                * Depend on ORBit-0.5.6
                * Re-include Federico's Policy leak fixes.
                * Fix fatal toolbar icon bug (DanW)
                * memset fixes (George Lebl)

        * Monikers
                Drastic simplification of Moniker API (Me)
                Std monikers merged to shlib (Dietmar)
                Moniker extenders implemented (Dietmar, Me)
                Misc. fixes (Miguel)
                Parsing tests added (Me)
                Simplify interface naming on resolve (Me)

        * Property bag
                Listening re-written using EventSource (Dietmar)
                Use our own ID scheme to identity listeners (Dietmar)
                Allow sub-classing (George Lebl)

        * Running context to track references implemented (Me)

        * Useful cleanups
                * API documentation (Miguel, Me)
                * Make generic-factory sub-classable (Me)
                * Make the component selector control useful (Me)
                * Implement a shlib factory to handle module unloading (Me)
                * UI methods on Canvas embeddables (Me)
                * VFS storage fixes (Lutz Muller)
                * Persist fixes (Gergo Erdi)
                * Make bonobo-transient sub-classable (George Lebl)

        * Build & misc. bug fixes (Arturo Tena, Richard Hult, Dave Camp
                                   Daniel Egger, Maciej Stachowiak)


Bonobo 0.30

        * Released since Elliot would not produce a fixed ORBit release,
        reverts fixes in 0.29, should not pass distcheck.

Bonobo 0.29

        * Evil bugs
                * X / CORBA synchronisation issues fixed (Me)
                * Property bag / transient memory leaks fixed (Federico)
                * Toolbar widget leak (Darin Alder)
                * Lots of misc leaks nailed (Morten)
                * Bonobo plug / socket race condition nailed (Me)

        * Storage stuff
                * Local FS Stream / Storage impl. completed (Dietmar)
                * Efs stream / storage polished up (Dietmar)
                * VFS storage cleans (Me)
                * Bonobo IO plugins version fixage (Dietmar)
                * Storage module cleans, and regression testing (Dietmar)

        * Monikers
                * Bonobo widget switched to use monikers (Me)
                * Bonobo contexts - moniker context (Me)
                * tar moniker (Vladimir Vukicevic)
                * http, gunzip monikers (Joe Shaw)
                * moniker test code (Joe Shaw)
                * Asynchronous moniker resolution (Me)

        * New transient CORBA object helper (Miguel)

        * UI stuff
                * Alpha composited icons (for pixmap themes) (Cody Russell)
                * Control desired size querying (Martin)
                * Completed toolbar item 'look' markup (John Sullivan)
                * pixmap location code flexed (Martin)
                * placeholder can hide all its contents (Darin)
                * UI signaling race conditions nailed (Darin, Me)
                * Helpers for removing dead UI components (Maciej)

        * Misc
                * CORBA_any * <-> XML serialization (Me)
                * generic listener / event interface re-written (Alex Graveley)
                * Created component selector control (Me)
                * listener fixes (Iain Holmes)
                * BonoboPropertyControl implemented & honed (Iain)
                * Make each IDL file parse individualy (Mathieu Lacage)

        * Embeddable factory bug flattened (Mike Kestner)

        * Docs
                * API build cleanups (Zach Frey)
                * Lots of API doc writing / organising (Miguel)
                * doc/NAMESPACE added to start namespacing IDL (Me)

        * Lots of bugs fixed.
2001-04-06 22:16:49 +00:00
rh
a6c4290fcc Add missing patch 2001-04-06 22:12:55 +00:00
rh
9bc49e1bfa Update gnome-print to 0.28
Changes are:

2001-03-20  Lauris Kaplinski  <lauris@ximian.com>

        * configure.in: Version 0.28

        * run-gnome-font-install: Added IRIX-specific font & exec paths

        * installer/gnome-font-install.c: #include <popt-gnome.h> instead
	of <popt.h>

2001-03-08  Chema Celorio  <chema@celorio.com>

        * tests/testprint4.c (latin_to_utf8): was not being used, #ifdef
        out

2001-03-07  Lauris Kaplinski  <lauris@ximian.com>

        * gnome-print.spec.in (Group): Changed fontmap to fontamp2 and added
        fax profile

2001-03-06  Lauris Kaplinski  <lauris@ximian.com>

        * configure.in: Set version to final 0.26

        * tests/testprint.c (test_dump_metafile): Close context after
	printing

2001-03-02  Lauris Kaplinski  <lauris@ximian.com>

        * installer/gnome-font-install.c (gfi_process_type1_alias): Read
        afm file, so we get correct italic angle and weight in case entry
        does not have them (as is the case with hand-made entries)

        * run-gnome-font-install: Change fontmap file name to fontmap2

2001-02-23  Lauris Kaplinski  <lauris@ximian.com>

        * configure.in: Use version 0.26.pre

2001-02-22  Lauris Kaplinski  <lauris@ximian.com>

        * profiles/fax-g3.profile (driver): Added fax profile

2001-02-21  Lauris Kaplinski  <lauris@ximian.com>

        * tests/testtext.c (print_test_page): Added beginpage

        * tests/testprint3.c (print_test_page): Added beginpage

        * tests/testprint2.c (print_test_page): Added beginpage
2001-04-06 22:12:07 +00:00
rh
66ea0dceb2 Update controlcenter to 1.4.0.1. Changes include bugfixes and the
introduction of the new GNOME OMF documentation framework.
2001-04-06 22:08:09 +00:00
jwise
85f85864c7 Add a message file pointing users to the ODBC chapter of the PostgreSQL
documentation.
2001-04-06 22:05:43 +00:00
rh
4ee0b46b0d Update gnome-vfs to 1.0. Changes include performance improvements through
a revamped pthread backend, several API cleanups, and numerous bug fixes.
2001-04-06 22:03:07 +00:00
jwise
49efcd2aa0 Add and enable odbc-postgresql. 2001-04-06 22:01:09 +00:00
rh
3c86efb06c Update GConf to 1.0.0
Changes include:

2001-03-11  Havoc Pennington  <hp@redhat.com>

        * configure.in: 1.0.0, woo-hoo!

2001-03-06  Havoc Pennington  <hp@redhat.com>

        * configure.in: bump version to 0.51

        * gconf/gconfd.c (gconf_main): change the periodic timeout to 15
        minutes, to be a bit more aggressive about cleanup.
        (open_append_handle): add a timeout to close the
        saved_state filehandle after a short time, to avoid keeping
        descriptors open.
        (gconfd_need_log_cleanup): new internal function used to control
        whether the periodic cleanup function needs to save a log file

2001-02-27  Havoc Pennington  <hp@redhat.com>

        * gconf.spec.in: %define prefix %{_prefix} instead of @prefix@

2001-02-27  Havoc Pennington  <hp@redhat.com>

        * configure.in: bump version to 0.50

        * gconf/gconfd.c (main): Close stdin/stdout/stderr. Also, set the
        log handler, so we don't need stdout/stderr to see GLib messages,
        they go to syslog.

        * configure.in: Turn off debugging by default

        * gconf/Makefile.am (INCLUDES): set the log domain

        * gconf/gconftool.c (recurse_subdir_list): the list contains full
        directory paths to start with, fix from Colm

        * gconf/gconfd.c (register_database): bugfix from Colm

        * gconf/gconf.c (lookup_engine): fix from Colm to check that we
        have an engines hash
        (gconf_engine_get_for_address): improve warning message, fix from
        Colm
        (gconf_engine_remove_dir): new function from Colm, this was
        implemented on the server side but somehow never exported.

        * gconf/gconf-database.c (gconf_database_get_persistent_name): Fix
        from Colm to handle the case of empty databases (no sources).

2001-02-12  Stanislav Visnovsky  <visnovsky@nenya.ms.mff.cuni.cz>

        * configure.in: Added sk to ALL_LINGUAS.

2001-02-05  Havoc Pennington  <hp@redhat.com>

        File permissions fixes, problem pointed out by Steve Fox.

        * backends/xml-dir.c (dir_sync): chmod() the XML file after
        xmlSaveFile creates it

        * gconf/gconfd.c (main): following Stevens advice for daemons, we
        were calling umask(0), change to umask(022). We need a predictable
        umask, but a safer one would be good since this is a per-user
        daemon not a system daemon.

        * backends/dir-utils.c (mode_t_to_mode): make this more portable,
        for paranoia

        * backends/xml-dir.c (dir_load): We were getting directory
        permissions from the %gconf.xml file, instead of from the XML root
        directory. Fix.

2001-02-01  Szabolcs Ban <shooby@gnome.hu>

        * configure.in: Added lang Hungarian.
        * po/hu.po: Added.

2001-01-21  Havoc Pennington  <hp@pobox.com>

        * backends/xml-entry.c (schema_subnode_extract_data): don't warn
        about <local_schema> with no locale field, because that's normal
        for the default case
        (schema_node_extract_value): use <local_schema> with no locale
        if it exists and we don't find anything better

        * tests/testschemas.c (check_schema_use): fix indentation and mem
        leaks

        * gconf/gconftool.c (do_get): print default value from schema

        * configure.in: Bump version to 0.12
2001-04-06 22:00:06 +00:00
jwise
df0d820956 Initial import of odbc-postgresql, the PostgreSQL 7 ODBC support. 2001-04-06 21:59:59 +00:00
rh
f97b6f0be9 Update oaf to 0.6.5.
Notable changes are:

oaf-0.6.5
---------

New in this release fixed the perl5.00404 bug
NO other changes

====================================
oaf-0.6.4
---------

New in this release

* fixed Unregistering servers causes failure when activating a
  re-registered version (mjs)

* fixed automounter problems (mjs)

* fixed popt options (Darin)

* added Romanian support (Dan Damian)

====================================
oaf-0.6.3
---------

New in this release:

* Memory leak fixes (Maciej, migras)

* SunOS support for oaf-slay (Michael)

* Assorted bug fixes (Maciej)

* Added new query language operator `prefer_by_list_order' for
  preferring particular components in priority order when available.

* Change working directory to "/" to avoiding mount issues

* Fix bug that made uloading shlib servers impossible (Maciej)

* New translations (Gustavo Maciel Dias Vieira)


====================================
oaf-0.6.2
---------

New in this release:

* Leak fixes (Ali)

* xml-18n-toolize (Maciej)

* Add DTD for oafinfo files (Maciej)

* Rewrite and clean up oafinfo loading code; make it accept .oaf as
  well as .oafinfo files (.oaf is the preferred naming now) (Maciej)

* Pass IOR by environment variable, not command line arg for security

* Doc updates (Mathieu, John R. Sheets)

* Assorted portability fixes (Jason Leach)

* libxml 1.x/2.x compatibility (Darin)

* Build fixes (Eskil, Mathieu, Maciej)

* Assorted bug fixes (Michael)

* New translations (Szabolcs BAN, Stanislav Visnovsky)
2001-04-06 21:55:39 +00:00
rh
baeb54adea Update libgtop to 1.0.12.
Notable changes are:

February 27, 2001:
=================

* Released LibGTop 1.0.12 "Gerolzhofen".

  - fix for Solaris 8 from Laszlo PETER (msg_limits, sem_limits).

  - fix for FreeBSD 4.2 from Rolf Grossmann (FreeBSD now uses
    `_KERNEL' instead of `KERNEL'). Bug #51334.

  - for BSDI, comment out `subnet' field in netload; this should make
    it compile, but there may be other problems. Bug #13345.

  This release is for GNOME 1.4 Beta2.

February 14, 2001:
=================

* Released LibGTop 1.0.11 "Jasmin":

  [The release which was supposed to be called "Gerolzhofen".]

  - merged in the Solaris code from LIBGTOP_1_1_2_PATCHES.

  - minor OpenBSD fixes.

  - again a bunch of updated translations.

  Please test the Solaris stuff and report and bugs and
  problems as soon as possible; I'll make a new release
  for the 2nd beta of GNOME 1.4 if necessary.

November 20, 2000:
=================

* Released LibGTop 1.0.10 "November Rain":

  - this release contains a bunch of updated translations.
2001-04-06 21:52:11 +00:00
rh
e3078c112c Update gnome-libs to 1.2.13. Changes are bugfixes only. 2001-04-06 21:47:04 +00:00
rh
9735546c94 Update ORBit to 0.5.7. Changes are bugfixes only. 2001-04-06 21:42:56 +00:00
jtb
3694278322 Updated to ncview-1.92c. No changelog. 2001-04-06 21:00:33 +00:00
tron
b98fc10e51 Use wildcard dependence on "pth" package. 2001-04-06 17:56:03 +00:00
fredb
864195477e Prevent a buffer overflow in "ntpd"; patch pulled up from the NetBSD CVS
repository. Unpatched, the daemon can be caused to segfault by application
of malformed IP packets. Allegedly, this could lead to a root compromise,
but that has not been confirmed on NetBSD. See NetBSD Security Advisory
NetBSD-SA2001-004.
2001-04-06 15:21:05 +00:00
hubertf
b405a4ddfe Also install odbctest program 2001-04-06 11:39:54 +00:00
hubertf
fa2ac1c517 Install some documentation. 2001-04-06 11:19:33 +00:00
rh
0a70bb035f Add and enable scrollkeeper 2001-04-06 10:54:10 +00:00
rh
4c7a55c633 Initial import of scrollkeeper-0.2, the open document cataloging project. 2001-04-06 10:53:26 +00:00
hubertf
04bf8fbc02 Actually, this is version 1.0.1 - it just happens to be part of KDE 2.0.1. 2001-04-06 10:24:01 +00:00
zuntum
424c70230c Update scanssh to 1.55
o fix for address generation problems for networks with more than 64,000 adresses
 o new option that causes a different log message on the scanned machines.
2001-04-06 07:38:36 +00:00
itojun
18e02b89fd upgrade to 7.7.1.
Version 7.7.1

Daniel (3 April 2001)
- Puneet Pawaia pointed out two serious problems. Libcurl would attempt to
  read bad memory during situations when an (ftp) connection attempt failed.
  Also, the lib/Makefile.vc6 was corrected.

- More investigations in the Location: following code made me realize that
  it was not clean enough to work transparantly with persistant and non-
  persistant connections. I think I've fixed it now.

Daniel (29 March 2001)
- Georg Horn mailed me some corrections for the Curl::easy perl interface.

- Experimental ftps:// support added. It is basically FTP over SSL for the
  control connection. It still makes all data transfers going over unencrypted
  connections. Rainer Weikusat's ftpd-ssl server hack supports this and I used
  that to verify the functionality.

Daniel (27 March 2001)
- Guenole Bescon discovered that if you set a CURLOPT_TIMEOUT and then tried
  to get a file from a site and it fails, the SIGALRM would still be sent
  after the timeout-time, quite inexpectedly!

- I added an ftp transfer example to docs/examples/ and I also wrote a tiny
  example makefile that can be used as a start when building one of the
  examples.

Version 7.7.1-beta1

Daniel (26 March 2001)
- Mohamed Lrhazi reported problems with 7.6.1 and persistant HTTP/1.0
  connections (when the server replied a Connection: Keep-Alive) and this
  problem was not properly dealt with in 7.7 either. A patch was posted to the
  curl-and-php mailing list.

Daniel (24 March 2001)
- Colin Watson reported about a problem and brought a patch that corrected it,
  which was about the man page and lines starting with a single quote (') in a
  way that gnroff doesn't like.

Daniel (23 March 2001)
- Peter Bray reported correctly that the root makefile used make instead of
  $(MAKE) for the test target.

- Corrected the Curl::easy perl interface to use curl_easy_setopt() and not
  curl_setopt() which was removed in 7.7!

- SM provided updates on three documents (MANUAL, INSTALL and FAQ).

- When following a Location:, libcurl would sometimes write to the URL string
  in a way it shouldn't. As the pointer is passed-in to libcurl from an
  application, we can't be allowed to write to it. The particular bug report
  from 'nk' that brought this up was because he had a read-only URL that then
  caused a libcurl crash!

- No longer reads HEAD responses longer than to the last header. Previously,
  curl would read the full reply if the connection was a "close" one.

- libcurl did re-use connections way too much. Doing "curl
  http://www.{microsoft,ibm}.com" would make it re-use the connection which
  made the second request return very odd results.

Daniel (22 March 2001)
- Edin Kadribasic made me aware that curl should not re-send POST requests
  when following 302-redirects. I made 302 work like 303 which means curl uses
  GET in the following request(s).

- libcurl now reset the "followed-location" counter on each invoke of
  curl_easy_perform() as it otherwise would sum up all redirects on the same
  connection and thus could reach the maxredirs counter wrongly.

- Jim Drash suggested curl_escape() should not re-encode what already looks
  like an encoded sequence and I think that's a fair suggestion.

Version 7.7

Daniel (22 March 2001)
- The configure script now fails with an error message if gethostbyname_r() is
  detected but it couldn't figure out how to invoke it (what amount of
  arguments it is supposed to get). Reports from Andrés García made me aware
  of this need.

- Talking with Jim Drash made me finally put the curl_escape and curl_unescape
  functions in the curl.h include file and write man pages for them. The
  escape function was modified to use the same interface as the unescape one
  had.

- No bug reports at all on the latest betas. Release time coming up.

Version 7.7-beta5

Daniel (19 March 2001)
- Georg Ottinger reported problems with using -C together with -L in the sense
  that the -C info got lost when it was redirected. I could not repeat this
  problem on the 7.7 branch why I leave this for the moment. Test case 39 was
  added to do exactly this, and it seems to do right.

- Christian Robottom Reis reported how his 7.7 beta didn't successfully do
  form posts as elegantly as 7.6.1 did. Indeed, this was a flaw in the header
  engine, as HTTP 1.1 has introduced a new 100 "transient" return code for PUT
  and POST operations that I need to add support for. Section 8.2.3 in RFC2616
  has all the details. Seems to work now!

Daniel (16 March 2001)
- After having experienced another machine break-down, we're back.

- Georg Horn's perl interface Curl::easy is now included in the curl release
  archive. The perl/ directory is now present. Please help me with docs,
  examples and updates you think fit.

- Made a new php/ directory in the release archive and moved the PHP examples
  into a subdirectory in there. Not much PHP info yet, but I plan to. Please
  help me here as well!

- Made libcurl return error if a transfer is aborted in the middle of a
  "chunk". It actually enables libcurl to discover premature transfer aborts
  even if the Content-Length: size is unknown.

Daniel (15 March 2001)
- Added --connect-timeout to curl, which sets the new CURLOPT_CONNECTTIMEOUT
  option in libcurl. It limits the time curl is allowed to spend in the
  connection phase. This differs from -m/--max-time that limits the entire
  file transfer operation. Requested by Larry Fahnoe and others.

  I also updated the curl.1 and curl_easy_setopt.3 man pages and removed the
  item from the TODO.

Version 7.7-beta4

Daniel (14 March 2001)
- Made curl grok IPv6 with HTTP proxies and got everything to compile nicely
  again when ENABLE_IPV6 is set.

  I need to remake things in the test suite. I can't test the FTP parts with
  curl built for IPv6 as it uses a different set of FTP commands then!

- I fell onto a bug report on php.net (posted by Lars Torben Wilson) that was
  a report meant for our project. Anyway, it said the .netrc parsing didn't
  work as supposed, and as I agreed with Lars, I made the netrc parser use
  getpwuid() to figure out the home directory of the effective user and try
  that netrc. It still uses the environment variable HOME for those that don't
  have that function or if the user doesn't return valid pwd info.

- Edin Kadribaic posted a bug report where he got a crash when a fetch with
  user+password in the URL followed a Location: to a second URL (absolute,
  without name+password). This bug has been around for a long while and
  crashes due to a read at address zero. Fixed now. Wrote test case 38, that
  tests this.

- Modified the test suite's httpserver slightly to append all client request
  data to its log file so that the test script now better can verify a range
  of requests and not only the last one, as it did previously.

- Updated the curl man page with --random-file and --egd-file details.

Version 7.7-beta3

Daniel (14 March 2001)
- Björn Stenberg provided similar fixes as Jörn did and some additional patches
  for non-SSL compiles.

- I increased the interface number for libcurl as I've removed the low level
  functions from the interface. I also took this opportunity to rename the
  Curl_strequal function to curl_strequal and Curl_strnequal to
  curl_strnequal, as they're public libcurl functions (even if they're still
  undocumented).

  This will make older programs not capable of using the new libcurl with
  just a drop-in replacement.

- Jörn Hartroth updated stuff for win32 compiles:
  o config-win32.h was fixed for socklen_t
  o lib/ssluse.c had a bad #endif placement
  o lib/file.c was made to compile on win32 again
  o lib/Makefile.m32 was updated with the new files
  o lib/libcurl.def matches the current interface state

Daniel (13 March 2001)
- It only took an hour or so before Jörn Hartroth found a problem in the
  chunked transfer-encoding. Given his fine example-site, I could easily spot
  the problem and when I re-read the spec (the part I have pasted in the top
  of the http_chunks.h file), I realized I had made my state-machine slightly
  wrong and didn't expect/handle the trailing CRLF that comes after the data
  in each chunk (and those extra two bytes sure feel wasted).

  Had to modify test case 34 to match this as well.

Version 7.7-beta2

Daniel (13 March 2001)
- Added the policy stuff to the curl_easy_setopt man page for the two supported
  policies.

- Implemented some support for the CURLOPT_CLOSEPOLICY option. The policies
  CURLCLOSEPOLICY_LEAST_RECENTLY_USED and CURLCLOSEPOLICY_OLDEST are now
  supported, and the "least recently used" is used as default if no policy
  is chosen.

Daniel (12 March 2001)
- Added CURLOPT_RANDOM_FILE and CURLOPT_EGDSOCKET to libcurl for seeding the
  SSL random engine. The random seeding support was also brought to the curl
  client with the new options --random-file <file> and --egd-file <file>. I
  need some people to really test this to know they work as supposed. Remember
  that libcurl now informs (if verbose is on) if the random seed is considered
  weak (HTTPS connections).

- Made the chunked transfer-encoding engine detected bad formatted data length
  and return error if so (we can't possibly extract sensible data if this is
  the case). Added a test case that detects this. Number 36. Now there are 60
  test cases.

- Added 5 new libcurl options to curl/curl.h that can be used to control the
  persistant connection support in libcurl. They're also documented (fairly
  thoroughly) in the curl_easy_setopt.3 man page. Three of them are now
  implemented, although not really tested at this point... Anyway, the new
  implemented options are named CURLOPT_MAXCONNECTS, CURLOPT_FRESH_CONNECT,
  CURLOPT_FORBID_REUSE. The ones still left to write code for are:
  CURLOPT_CLOSEPOLICY and its related option CURLOPT_CLOSEFUNCTION.

- Made curl (the actual command line tool) use the new libcurl 7.7 persistant
  connection support by re-using the same curl handle for every specified file
  transfer and after some more test case tweaking we have 100% test case OK.
  I made some test cases return HTTP/1.0 now to make sure that works as well.

- Had to add 'Connection: close' to the headers of a bunch of test cases so
  that curl behaves "old-style" since the test http server doesn't do multiple
  connections... Now I get 100% test case OK.

- The curl.haxx.se site, the main curl mailing list and my personal email are
  all dead today due to power blackout in the area where the main servers are
  located. Horrible.

- I've made persistance work over a squid HTTP proxy. I find it disturbing
  that it uses headers that aren't present in any HTTP standard though
  (Proxy-Connection:) and that makes me feel that I'm now on the edge of what
  the standard actually defines. I need to get this code excercised on a lot
  of different HTTP proxies before I feel safe.

  Now I'm facing the problem with my test suite servers (both FTP and HTTP)
  not supporting persistant connections and libcurl is doing them now. I have
  to fix the test servers to get all the test cases do OK.

Daniel (8 March 2001)
- Guenole Bescon reported that libcurl did output errors to stderr even if
  MUTE and NOPROGRESS was set. It turned out to be a bug and happens if
  there's an error and no ERRORBUFFER is set. This is now corrected.

Version 7.7-beta1

Daniel (8 March 2001)
- "Transfer-Encoding: chunked" is no longer any trouble for libcurl. I've
  added two source files and I've run some test downloads that look fine.

- HTTP HEAD works too, even on 1.1 servers.

Daniel (5 March 2001)
- The current 57 test cases now pass OK. It would suggest that libcurl works
  using the old-style with one connection per handle. The test suite doesn't
  handle multiple connections yet so there are no test cases for this.

- I patched the telnet.c heavily to not use any global variables anymore. It
  should make it a lot nicer library-wise.

- The file:// support was modified slightly to use the internal connect-first-
  then-do approach.

Daniel (4 March 2001)
- More bugs erased.

Version 7.7-alpha2

Daniel (4 March 2001)
- Now, there's even a basic check that a re-used connection is still alive
  before it is assumed so. A few first tests have proven that libcurl will
  then re-connect instead of re-use the dead connection!

Daniel (2 March 2001)
- Now they work intermixed as well. Major coolness!

- More fiddling around, my 'tiny' client I have for testing purposes now has
  proved to download both FTP and HTTP with persistant connections. They do
  not work intermixed yet though.

Daniel (1 March 2001)
- Wilfredo Sanchez pointed out a minor spelling mistake in a man page and that
  curl_slist_append() should take a const char * as second argument. It does
  now.

Daniel (22 February 2001)
- The persistant connections start to look good for HTTP. On a subsequent
  request, it seems that libcurl now can pick an already existing connection
  if a suitable one exists, or it opens a new one.

- Douglas R. Horner mailed me corrections to the curl_formparse() man page
  that I applied.

Daniel (20 February 2001)
- Added the docs/examples/win32sockets.c file for our windows friends.

- Linus Nielsen Feltzing provided brand new TELNET functionality and
  improvements:

  * Negotiation is now passive. Curl does not negotiate until the peer does.
  * Possibility to set negotiation options on the command line, currently only
    XDISPLOC, TTYPE and NEW_ENVIRON (called NEW_ENV).
  * Now sends the USER environment variable if the -u switch is used.
  * Use -t to set telnet options (Linus even updated the man page, awesome!)

- Haven't done this big changes to curl for a while. Moved around a lot of
  struct fields and stuff to make multiple connections get connection specific
  data in separate structs so that they can co-exist in a nice way. See the
  mailing lists for discussions around how this is gonna be implemented. Docs
  and more will follow.

  Studied the HTTP RFC to find out better how persistant connections should
  work. Seems cool enough.

Daniel (19 February 2001)
- Bob Schader brought me two files that help set up a MS VC++ libcurl project
  easier. He also provided me with an up-to-date libcurl.def file.

- I moved a bunch of prototypes from the public <curl/curl.h> file to the
  library private urldata.h. This is because of the upcoming changes. The
  low level interface is no longer being planned to become reality.

Daniel (15 February 2001)
- CURLOPT_POST is not required anymore. Just setting the POST string with
  CURLOPT_POSTFIELDS will switch on the HTTP POST. Most other things in
  libcurl already works this way, i.e they require only the parameter to
  switch on a feature so I think this works well with the rest. Setting a NULL
  string switches off the POST again.

- Excellent suggestions from Rich Gray, Rick Jones, Johan Nilsson and Bjorn
  Reese helped me define a way how to incorporate persistant connections into
  libcurl in a very smooth way. If done right, no change may have to be made
  to older programs and they will just start using persistant connections when
  applicable!

Daniel (13 February 2001)
- Changed the word 'timeouted' to 'timed out' in two different error messages.
  Suggested by Larry Fahnoe.

Version 7.6.1

Daniel (9 February 2001)
- Frank Reid and Cain Hopwood provided information and research around a HTTPS
  PUT/upload problem we seem to have. No solution found yet.

Daniel (8 February 2001)
- An interesting discussion is how to specify an empty password without having
  curl ask for it interactively? The current implmentation takes an empty
  password as a request for a password prompt. However, I still want to
  support a blank user field. Thus, today if you enter "-u :" (without user
  and password) curl will prompt for the password. Tricky. How would you
  specify you want the prompt otherwise?

- Made the netrc parse result possible to use for other protocols than FTP and
  HTTP (such as the upcoming TELNET fixes).

- The previously mentioned "MSVC++ problems" turned out to be a non-issue.

- Added a HTTP file upload code example in the docs/examples/ section on
  request.

- Adjusted the FTP response fix slightly.

Version 7.6.1-pre3

Daniel (7 February 2001)
- SM found a flaw in the response reading function for FTP that could make
  libcurl not get out of the loop properly when it should, if libcurl got -1
  returned when reading the socket.

- I found a similar mistake in http.c when using a proxy and reading the
  results from the proxy connection.

Daniel (6 February 2001)
- A friendly person named "SM" (nntp at iname.com) pointed out that the VC
  makefile in src/ needed the libpath set for the debug build to work.

- Daniel Gehriger stepped in to assist with the VC++ stuff Robert Weaver
  brought up yesterday.

Daniel (5 February 2001)
- Jun-ichiro itojun Hagino brought a big patch that brings IPv6-awareness to
  a bunch of different areas within libcurl.

- Robert Weaver told me about the problems the MS VC++ 6.0 compiler has with
  the 'static' keyword on a number of libcurl functions. I might need to add a
  patch that redefines static when libcurl is compiled with that compiler.
  How do I know when VC++ compiles, anyone?

Daniel (4 February 2001)
- curl_getinfo() was extended with two new options:
  CURLINFO_CONTENT_LENGTH_DOWNLOAD and CURLINFO_CONTENT_LENGTH_UPLOAD. They
  return the full assumed content length of the transfer in the given
  direction. The CURLINFO_CONTENT_LENGTH_DOWNLOAD will be the Content-Length:
  size of a HTTP download. Added descriptions to the man page as well. This
  was done after discussions with Bob Schader.

Daniel (3 February 2001)
- Ingo Ralf Blum provided another fix that makes curl build under the more
  recent cygwin installations. It seems they've changed the preset defines to
  not include WIN32 anymore.

Version 7.6.1-pre2

Daniel (31 January 2001)
- Curl_read() and curl_read() now return a ssize_t for the size, as it had to
  be able to return -1. The telnet support crashed due to this and there was a
  possibility to weird behaviour all over. Linus Nielsen Feltzing helped me
  find this.

- Added a configure.in check for a working getaddrinfo() if IPv6 is requested.
  I also made the configure script feature --enable-debug which sets a couple
  of compiler options when used. It assumes gcc.

Daniel (30 January 2001)
- I finally took a stab at the long-term FIXME item I've had on myself, and
  now libcurl will properly work when doing a HTTP range-request that follows
  a Location:. Previously that would make libcurl fail saying that the server
  doesn't seem to support range requests.

Daniel (29 January 2001)
- I added a test case for the HTTP PUT resume thing (test case 33).

Version 7.6.1-pre1

Daniel (29 January 2001)
- Yet another Content-Range change. Ok now? Bob Schader checks from his end
  and it works for him.

Daniel (27 January 2001)
- So the HTTP PUT resume fix wasn't good. There should appearantly be a
  Content-Range header when resuming a PUT.

- I noticed I broke the download-check that verifies that a resumed HTTP
  download is actually resumed. It got broke because my new 'httpreq' field
  in the main curl struct. I should get slapped. I added a test case for
  this now, so I won't be able to ruin this again without noticing.

- Added a test case for content-length verifying when downloading HTTP.

- Made the progress meter title say if the transfer is being transfered. It
  makes the output slightly better for resumes.

- When dealing with Location: and HTTP return codes, libcurl will not attempt
  to follow the spirit of RFC2616 better. It means that when POSTing to a
  URL that is being following to a second place, the standard will judge on
  what to do. All HTTP codes except 303 and 305 will cause curl to make a
  second POST operation. 303 will make a GET and 305 is not yet supported.

  I also wrote two test cases for this POST/GET/Location stuff.
2001-04-06 03:47:23 +00:00
itojun
41b34a2982 no need to link libgmp. 2001-04-05 23:29:42 +00:00
jtb
ef5a1dd759 Updated to bioperl-0.7.0.
Revision history for Bioperl core modules

0.7  Large number of changes, including refactoring of the
     Object system, new parsers, new functionality and
     all round better system. Highlights are:


     o Refactored root of inheritance: moved to a lightweight Bio::Root::RootI;
       Bio::Root::IO for I/O and file/handle capabilities.

     o Imported BPlite modules from Ian Korf for BLAST
       parsing. This is considered the supported BLAST parser;
       Bio::Tools::Blast.pm will eventually phase out due to lack of support.

     o Improved Sequence Feature model. Added complete location
       modelling (with fuzzy and compound locations).  See
       Bio::LocationI and the modules under Bio/Location.  Added
       support in Genbank/EMBL format parsing to completely parse
       feature tables for complex locations.

     o Moved special support for databanks etc to specialized modules under
       Bio/Seq/. One of these supports very large sequences through
       a temporary file as a backend.

     o Explicit Gene, Transcript and Exon SeqFeature objects, supporting
       CDS retrieval and exon shuffling.

     o More parsers: Sim4, Genscan, MZEF, ESTScan, BPbl2seq, GFF

     o Refactored Bio/DB/GenBank+GenPept. There is now also DB/SwissProt and
       DB/GDB (the latter has platform-specific limitations).

     o New analysis parser framework for HT sequence annotation (see
       Bio::SeqAnalysisParserI and Bio::Factory::SeqAnalysisParserFactory)

     o New Alignment IO framework

     o New Index modules (Swissprot)

     o New modules for running Blast within perl
       (Bio::Tools::Run::StandAloneBlast). Added modules for running
       Multiple Sequence Alignment tools ClustalW and TCoffee
       (Bio::Tools::Run::Alignment).

     o New Cookbook-style tutorial (see bptutorial.pl). Improved
       documentation across the package.

     o Much improved cross platform support. Many known incompatibilities
       have been fixed; however, NT and Mac do not work across the entire
       setup (see PLATFORMS).

     o Many bug fixes, code restructuring, etc. Overall stability and
       maintainability benefit a lot.

     o A total of 957 automatic tests


0.6.2

   There are very few functionality changes but a large
   number of software improvements/bug fixes across the package.

   o The EMBL/GenBank parsing are improved.

   o The Swissprot reading is improved. Swissprot writing
     is disabled as it doesn't work at all. This needs to
     wait for 0.7 release

   o BLAST reports with no hits are correctly parsed.

   o Several other bugs of the BLAST parser (regular expressions, ...)
     fixed.

   o Old syntax calls have been replaced with more modern syntax

   o Modules that did not work at all, in particular the Sim4
     set have been removed

   o Bio::SeqFeature::Generic and Bio::SeqFeature::FeaturePair
     have improved compliance with interface specs and documentation

   o Mailing list documentation updated throughout the distribution

   o Most minor bug fixes have happened.

   o The scripts in /examples now work and have the modern syntax
     rather than the deprecated syntax


0.6.1  Sun April 2 2000

   o Sequences can have Sequence Features attached to them
        - The sequence features can be read from or written to
          EMBL and GenBank style flat files

   o Objects for Annotation, including References (but not
     full medline abstracts), Database links and Comments are
     provided

   o A Species object to represent nodes on a taxonomy tree
     is provided

   o The ability to parse HMMER and Sim4 output has been added

   o The Blast parsing has been improved, with better PSI-BLAST
     support and better overall behaviour.

   o Flat file indexed databases provide both random access
     and sequential access to their component sequences.

   o A CodonTable object has been written with all known
     CodonTables accessible.

   o A number of new lightweight analysis tools have been
     added, such as molecular weight determination.

    The 0.6 release also has improved software engineering

   o The sequence objects have been rewritten, providing more
     maintainable and easier to implement objects. These
     objects are backwardly compatible with the 0.05.1 objects

   o Many objects are defined in terms of interfaces and then
     a Perl implementation has been provided. The interfaces
     are found in the 'I' files (module names ending in 'I').

     This means that it is possible to wrap C/CORBA/SQL access
     as true "bioperl" objects, compatible with the rest of
     bioperl.

   o The SeqIO system has been overhauled to provide better
     processing and perl-like automatic interpretation of <>
     over arguments.

   o Many more tests have been added (a total of 172 automatic
     tests are now run before release).



0.05.1 Tue Jun 29 05:30:44 1999
        - Central distribution now requires Perl 5.004. This was
          done to get around 5.003-based problems in Bio/Index/*
          and SimpleAlign.
        - Various bug fixes in the Bio::Tools::Blast modules
          including better exception handling and PSI-Blast
          support. See Bio/Tools/Blast/CHANGES for more.
        - Fixed the Parse mechanism in Seq.pm to use readseq.
	  Follow the instructions in README for how to install
	  it (basically, you have to edit Parse.pm).
        - Improved documentation of Seq.pm, indicating where
          objects are returned and where strings are returned.
        - Fixed uninitialized warnings in Bio::Root::Object.pm
          and Bio::Tools::SeqPattern.pm.
        - Bug fixes for PR#s: 30,31,33-35,41,42,44,45,47-50,52.

0.05  Sun Apr 25 01:14:11 1999
        - Bio::Tools::Blast modules have less memory problems
          and faster parsing. Webblast uses LWP and supports
          more functionality. See Bio/Tools/Blast/CHANGES for more.
        - The Bio::SeqIO system has been started, moving the
          sequence reformatting code out of the sequence object
        - The Bio::Index:: system has been started, providing
          generic index capabilities and specifically works for
          Fasta formatted databases and EMBL .dat formatted
	  databases
        - The Bio::DB:: system started, providing access to
          databases, both via flat file + index (see above) and
          via http to NCBI
        - The scripts/ directory, where industrial strength scripts
          are put has been started.
        - Many changes - a better distribution all round.
2001-04-05 21:48:40 +00:00
zuntum
d2e0134873 Update MASTER_SITES and HOMEPAGE 2001-04-05 19:53:35 +00:00
jwise
e358eee4b7 Replace use of (removed) install-build-depends target with code to acheive
the same result.  Fix suggested by agc.
2001-04-05 19:27:41 +00:00
jwise
9001444411 Make sure .orig files from patching don't get installed. 2001-04-05 19:12:21 +00:00
wennmach
849ced35ca Fix PLIST (leftover files discovered in Hubert Feyrers bulk build).
Add PLIST.java (contains additional installed files if a javac is
present during build).

Modify Makefile to take the possible presence of a Java compiler
into account.
2001-04-05 17:56:19 +00:00
wiz
ae30a14ef6 Oops: Move @PREFIX@ in right place. 2001-04-05 17:01:11 +00:00
wiz
f2d3428fbb Add an rc.d style script (using the one from -current).
Sort PLIST.
2001-04-05 16:58:49 +00:00
skrll
2e147b387e Make timidity build environment honour LDFLAGS settings. This should fix
build problems when using xpkgwedge.

Reported by Rex McMaster <rmcm@compsoft.com.au> in pkg/12555
2001-04-05 16:03:51 +00:00
wiz
b3118416e4 Standardize patch file names. 2001-04-05 15:54:55 +00:00
wiz
0947f8582c Standardize patch file name. 2001-04-05 15:53:48 +00:00
wiz
14eaa771de Standardize patch file names. 2001-04-05 15:35:43 +00:00