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2427 commits

Author SHA1 Message Date
adam
17ddcc27aa This should have been imported along with R-2.10.0; oops 2009-12-21 11:51:19 +00:00
asau
f75be16718 Update to Maxima 5.20.1.
Approved by <agc>.


   Backwards-incompatible changes:

 * removed package jtroot3 (superseded by bfallroots)

 * internal symbols of specint replaced by more descriptive names:

    %f         --> hypergeometric
    %e         --> elliptic_ec
    %kelliptic --> elliptic_kc
    %p[a,b,c]  --> jacobi_p
    %p[a,b]    --> assoc_legendre_p
    %p[a]      --> legendre_p
    %q[a,b]    --> assoc_legendre_q
    %q[a]      --> legendre_q
    hstruve    --> struve_h
    lstruve    --> struve_l
    %d         --> parabolic_cylinder_d
    %m         --> whittaker_m
    %w         --> whittaker_w
    %ei        --> expintegral_ei
    %h[n,x]    --> hankel_1 and hankel_2
    %he        --> hermite


   New items in core:

 * general mechanism for functions to distribute over operators
   (distribute_over declaration)


   Other revisions:

 * improved Laplace transforms of special functions

 * assume database:

   The inferences between the declarations of variables as integer,
   real, complex, .. have been cut out. The constant %i is declared
   to be imaginary. The constants %pi, %e, %gamma, %phi are declared
   to be real.

   The database handles expressions with constants more completely.
   Facts like assume(x < %pi/2) are now handled correctly.

   The sign of sums of constant expressions is determined more
   correctly.

   Askinteger take into account more facts from the database.

 * improvements of special functions:

   More functionality for the Hankel 1 and 2 functions:
   Expansion for a half integral order has been implemented.

   More consistent numerical evaluation of Bessel and Hankel functions.

   More general integrals for Bessel functions and implementation of
   integrals for the Airy functions.

   Gamma function accepts a Taylor expansion as an argument.

   Implementation of Struve H and L functions:
   Numerical evaluation for real and complex numbers in float and
   bigfloat precision. Handling of specific values. Derivatives of the
   functions and expansion for a half integral order is implemented.

   Adding mirror symmetry for the Airy functions.

   Improving the limits of the log and factorial functions.

 * package fft: revised for greater speed
 * package to_poly_solver: improvements
 * regularize error and warning messages, and translate via gettext (ongoing)
 * bug fixes and other improvements in plotting code
 * bug fixes in translator


   Bug fixes:

   2906049: integration failure with option integrate_use_rootsof :true
   2901855: limit(sqrt(x),x,minf) not fully evaluated
   2886564: conjugate(atan2(y,x)) not simplified
   2882408: solve_rat_ineq returns false answers
   2876387: ode2 asks if sqrt(3) is an integer
   2876284: nicedummies of subscripted
   2876277: hgfred([3/2,-2],[5/2],-x) not fully simplified
   2873057: incorrect version is reported in manual front page
   2872605: abs_integrate bug
   2872505: Assume database inconsistent after reset()
   2847387: hgfred([3/2,-b],[5/2],-1) bogus
   2843705: limit of psi[i]
   2842198: next_prime speed improvement
   2842060: unsimplified result from integrate
   2841504: Limit of the factorial function - 4 problems
   2840566: defint fails to determine if one of its limit is real
   2836339: unsimplified negation
   2835634: logcontract broken
   2835098: SIGN-PREP strangeness
   2834336: ratsimp vs facsum
   2824360: missing bug reporting node in manual's detailed menu
   2808568: Reserved words that aren't reserved
   2802006: integrate(1/(sqrt(x)+1), x, 0, 1);
   2770575: rtestsum test 226
   2636628: solve_rat_ineq doesnt find all soloutions
   2609426: integrate(cos(a)/sqrt((tan(a))^2+1), a,-%pi/2,%pi/2);
   2148461: docs for factor refer to "the field of integers"
   2018842: unsimplified result from jacobi_p
   1977146: radexpand does not work as explained in documentation
   1725951: unsimplified boolean
   1646397: listofvars includes true
   1551310: mod and floor should distribute over matrix and list
   1038624: askinteger ignores asksign database
    840360: qunit(4) internal errors
    831163: part(x) should give warning
    816797: limit(%i*log(a),a,0) nounform (%i*und problem)
    788892: zeroa handled inconsistently
    752067: Can't untrace ?meval
    706455: Should powerseries do Laurent expansions?
    652470: Pickapart error (due to MEMSIMILAR)
    640332: Need to specdisrep more systematically
    627759: Ratdisrep of aggregates
2009-12-20 22:49:39 +00:00
drochner
aa532a5817 update to 2.28.2
changes:
-Fix negative exponential detection
-Only disable trailing zeroes option in basic mode
-Disable ambiguous multiplication with Eulers number, e.g. "2e" as this
 makes exponential numbers confusing
2009-12-16 17:56:53 +00:00
drochner
b7a8a22980 use PYVERSSUFFIX, fixes Python!=2.5 2009-12-16 16:59:48 +00:00
asau
c515b3bc4d Dragonfly hack is no longer needed. 2009-12-16 01:58:08 +00:00
asau
aa4d175562 Update to OpenAxiom 1.3.0
Changes since previous release:

Compiler

  - The compiler now treats ^ as alias for **.
  - The compiler now rejects ambiguous left hand sides of
    definitions where parameter types are left out for
    inference. Previously, the compiler would pick the first
    signature from some mostly random order, with a warning.
  - For categories with default implementations, the compiler
    can be directed to compile only the purely category part
    (exports), or only the default implementations (category
    packages).
  - The compiler now supports a Foreign Function Interface. In
    particular, signatures for external entities may be declared
    at capsule level. Currently, only ISO C functions are
    supported, but future releases may support ISO C++ and other
    mainstream languages.
  - The parsing of signature for operators has been improved.
    Previously, operator names needed to be quoted in signature.
    That is not longer needed. For instance, previously, one had
    to write (at category level)

                       "*": (%,%) -> %
                       _/_\: (%,%) -> %
                       _not: % -> %

    With this release of OpenAxiom and onward, one can simply write

                       *: (%,%) -> %
                      /\: (%,%) -> %
                     not: % -> %

    which is much simpler to read, write, and much more regular.
  - The compiler now supports is-case pattern matching. The new
    pattern matching syntax is useful for structuring retractions,
    and also for domain recovery from expressions of type Any.
  - The compiler now supports the loop control transfer operator
    iterate in repeat loops - previously, the construct was
    accepted only in scripts (not libraries). That discrepency is
    now ended.


Interpreter

  - Declared variable with no specified values are now handled
    as if symbolic value with a specified type.
  - The interpreter now parses a disjunctive expression
    involving the 'is' operator the obvious way. E.g. Now

                T is Integer or T has Ring

    is now understood as

                (T is Integer) or (T has Ring)

  - The interpreter now handles existentially quantified or
    universally quantified expressions


Algebra

The following types have been added to OpenAxiom-1.3.0

  - The domain Boolean and category BitAggregate no longer
    export the operation ^ for logical negation. Use the
    operator not which is the canonical and documented operator.
  - The domain InputForm now has a new exported signature

                     parseString: String -> %

    for parsing expressions given as string.
  - The domain Boolean now belongs to the category
    OrderedFinite.
  - The domain KleeneTrivalentLogic is added. It implements
    Stephen Kleene's 3-valued propositional logic.
  - For file orinted I/O, new domains have been added:
      + IOMode: This domains defines three constants to indicate
        the direction of file I/O operations.
      + InputBinaryFile: This domains implements the basic input
        operations on binary files.
      + OutputBinaryFile: This domains implements the basic
        output operations on binary files.
  - The domain BinaryFile has been replaced by three specific domains:
      + InputBinaryFile: datatype for input file open in binary mode;
      + OutputBinaryFile: datatype for output file open in binary mode;
      + InputOutputBinaryFile: datatype for input and output file open
      	in binary mode.
  - Three new categories are introduced, related to conversions:
      + CoercibleFrom: This category is the mirror image of the
        standard category CoercibleTo.
      + HomotopicTo: This category is the symmetrization of the
        category CoercibleTo.
      + ConvertibleFrom: This category is the mirror image of
        ConvertibleTo.
  - Previous releases defined instantiations of the domain
    constructor Expression as satisfying the category OrderedSet.
    That was both confusing and incorrect in conjunction with
    other algebraic structures. From now on, Expression(T) no
    longer satisfies OrderedSet.
  - Three new categories have been added:
      + LeftLinearSet
      + RightLinearSet
      + LinearSet
    The category AbelianGroup extends LeftLinearSet Integer.
    The parameterized category constructor LeftModule extends
    LeftLinearSet. Similarly, the category RightModule extends
    RightLinearSet.
  - The domain Any has been reworked. In particular, the
    operation domainOf, objectOf, and showTypeInOutput have been
    removed. Equality of two objects of domain Any is equality
    according to the underlying domain, if that domain belongs to
    the category BasicType; otherwise, it is equality of storage
    locations.

Runtime System

  The Lisp backend now uses type information derived from exports
  and domain representation for code generation purposes.
2009-12-16 01:54:13 +00:00
asau
c440f9919c Update to FriCAS 1.0.8
Notable changes (compared to version 1.0.7) include:

  - Improved version of guessing package.  It can now handle
    much larger problems than before.  Added ability to guess
    functional substitution (Mahler) equations.
  - Experimental support for build using CMU CL.
  - Various speed improvements including faster indexing for two
    dimensional arrays.
  - By default FriCAS build tries to use SBCL.
  - Building no longer require patch.

Bug fixes, in particular:

  - correct definition of random() for matrices
  - conditionals in .input files work again
  - Spad compiler now recognizes more types as equal
  - fixed problem with pattern-matching quote
2009-12-15 23:36:28 +00:00
drochner
6f315d614e don't propagate guile dependency, it is only used at build time 2009-12-15 23:27:17 +00:00
joerg
3fbb207985 Recursive bump for libltdl 2009-12-15 21:54:17 +00:00
wiz
5f91fd7010 Set LICENSE. 2009-12-15 12:36:50 +00:00
wiz
a324d95850 Update to 2.4.2:
Changes from version 2.4.1 to version 2.4.2:
- Security fix in formatted output functions (buffer overflow).
- Formatted output functions: 6 is now the default value for
  empty precision field with %Rf.
- Better portability of configure script.
- Detection of intmax_t and uintmax_t types.
- Improved documentation: mpfr_get_z_exp, mpfr_strtofr, mpfr_get_str and
  formatted output functions.
- Improved message in case of assertion failure.
- Test coverage: 97.0% lines of code.
- Updated tcmp_ld test to really test the long double.
- Some documentation files are installed in $docdir.
- Removed mpfr_init_cache (unused and undocumented function).
- Fixed the way $CC / $CFLAGS are got from gmp.h (__GMP_CC / __GMP_CFLAGS).
- Bug fixes.
- Also note that GCC 4.4.0 (only this obsolete version) does not build
  MPFR 2.4.2 correctly; this is detected by "make check" (failures in
  tget_z and tpow_all).
2009-12-15 12:35:57 +00:00
asau
18ad144ffa It does support staged installation. 2009-12-13 02:01:27 +00:00
asau
74e317ac9d Support staged installation. 2009-12-12 21:58:18 +00:00
asau
8ed6e30dc5 Home page moved.
Support staged installation.
2009-12-12 20:56:54 +00:00
asau
282fafbab2 Support staged installation. 2009-12-12 20:39:56 +00:00
asau
e42bda7d53 Support staged installation. 2009-12-12 20:22:01 +00:00
asau
b12e5dd15c Support staged installation. 2009-12-12 20:11:24 +00:00
asau
965622ea82 Support staged installation. 2009-12-12 19:43:41 +00:00
asau
bb1e4f4a53 Support staged installation. 2009-12-12 19:19:00 +00:00
drochner
6e4dc09a86 +xylib 2009-12-12 14:02:21 +00:00
drochner
5af7c676fb add xylib-0.4, a library for reading powder diffraction data
(needed by "fityk")
2009-12-12 13:58:58 +00:00
asau
6bef3d9fa8 MAKE_JOBS_SAFE=no 2009-12-12 12:27:33 +00:00
drochner
aed990aee0 +fityk,muparser 2009-12-11 21:56:29 +00:00
drochner
a4732963a1 add fityk-0.8.9, a peak fitting program 2009-12-11 20:44:38 +00:00
drochner
7eafbfd194 add muparser-130, a parser for mathematical expressions 2009-12-11 19:53:57 +00:00
adam
48cec408a6 Removed R-Matrix 2009-12-11 19:48:33 +00:00
adam
5f23200ee3 R-Matrix is now a part of R distribution 2009-12-11 19:48:08 +00:00
adam
3c047decfb Added R-randomForest, R-e1071, R-classInt 2009-12-11 19:46:27 +00:00
adam
78127c662f Wrong path in Makefile 2009-12-11 19:45:46 +00:00
adam
436ce62cd0 Update to the latest version of the module along with R update 2009-12-11 19:36:55 +00:00
adam
18d139d5cc Update to the latest version of the module along with R update 2009-12-11 19:26:24 +00:00
adam
ecc035c841 Added USE_LANGUAGES 2009-12-11 19:25:33 +00:00
adam
3da4d2cac0 Update to the latest version of the module along with R update 2009-12-11 19:23:06 +00:00
adam
2266614186 Update to the latest version of the module along with R update 2009-12-11 19:18:17 +00:00
adam
6d78e5a942 Update to the latest version of the module along with R update 2009-12-11 19:14:36 +00:00
adam
9eac83dfd5 A package for choosing univariate class intervals for mapping or other graphics
purposes.
2009-12-11 19:11:00 +00:00
adam
eee38b60c2 Functions for latent class analysis, short time Fourier transform, fuzzy
clustering, support vector machines, shortest path computation, bagged
clustering, naive Bayes classifier, ...
2009-12-11 19:09:46 +00:00
adam
f0ef69440f Classification and regression based on a forest of trees using random inputs. 2009-12-11 19:06:17 +00:00
adam
cea954107c Changes 2.10.0:
* Package help is now converted from Rd by the R-based converters
  that were first introduced in 2.9.0.
* HTML help is now generated dynamically using an HTTP server
  running in the R process and listening on the loopback interface.
* polygon(), pdf() and postscript() now have a parameter
  'fillOddEven' (default FALSE), which controls the mode used for
  polygon fills of self-intersecting shapes.
* New debugonce() function; further,
  getOption("deparse.max.lines") is now observed when debugging.
* plot() methods for "stepfun" and hence "ecdf" no longer plot
  points by default for n >= 1000.
* [g]sub(*, perl=TRUE) now also supports '\E' in order to *end*
  \U and \L case changes, thanks to a patch from Bill Dunlap.
* factor(), `levels<-`(), etc, now ensure that the resulting factor
  levels are unique (as was always the implied intention).  Factors
  with duplicated levels are still constructible by low-level means,
  but are now declared illegal.
* New print() (S3) method for class "function", also used for
  auto-printing.  Further, .Primitive functions now print and
  auto-print identically.
* The print() and toLatex() methods for class "sessionInfo" now
  show the locale in a nicer format and have arguments to
  suppress locale information.
* In addition to previously only round(), there are other 'Math'
  group (S3) methods for 'difftime', such as floor(), signif(), abs(), etc.
* For completeness, old.packages() and available.packages() allow
  'type' to be specified (you could always specify 'available'
  or 'contriburl').
* More...
2009-12-11 18:53:40 +00:00
asau
6365f6fcde Support staged installation. 2009-12-11 18:10:56 +00:00
asau
e92a5783d1 Support staged installation. 2009-12-11 17:47:28 +00:00
asau
6ba5c68377 Support staged installation. 2009-12-11 17:36:50 +00:00
asau
c93e2fe386 Support staged installation. 2009-12-11 17:32:41 +00:00
asau
1a5798d74a This one uses BSD Make scripts.
Support staged installation.
2009-12-11 17:09:51 +00:00
asau
1bac64d734 Support staged installation. 2009-12-11 02:11:52 +00:00
asau
4bc5a31a25 Support staged installation. 2009-12-11 01:34:38 +00:00
markd
dc8daeb15a Fix so works again with non-default values of PKGSRC_FORTRAN. 2009-12-04 21:23:22 +00:00
joerg
7c47171b75 Always call libtool with the right --mode option. DESTDIR support. 2009-12-03 17:48:58 +00:00
asau
6754aacfb8 Follow f2c/libf2c split: bump revision of all packages
that list Fortran in used languages.
2009-12-03 13:06:51 +00:00
joerg
dff29b1803 destdir support 2009-11-30 17:53:58 +00:00