Commit graph

33 commits

Author SHA1 Message Date
wiz
7eeb51b534 Bump for perl-5.20.0.
Do it for all packages that
* mention perl, or
* have a directory name starting with p5-*, or
* depend on a package starting with p5-
like last time, for 5.18, where this didn't lead to complaints.
Let me know if you have any this time.
2014-05-29 23:35:13 +00:00
manu
3bc27951a0 Add a sge option for openmpi 2014-05-22 13:24:49 +00:00
jperkin
56cb9a056e GCC_REQD should be appended to, not set.
Fixes issues where a newer GCC has been chosen by the user but the GCC_REQD
was forcing an older (and broken) one to be pulled regardless.
2014-02-19 09:44:56 +00:00
joerg
7b2c482265 Newer NetBSD has shm_open, use a common PLIST fragment for all systems
using it.
2014-02-18 22:21:33 +00:00
asau
0b80fbfad3 POSIX shmem module is installed on FreeBSD. 2013-12-17 06:48:08 +00:00
manu
3aab276ce7 Add f90 option for fortran90 bindings 2013-07-19 03:52:29 +00:00
wiz
d2ca14a3f1 Bump all packages for perl-5.18, that
a) refer 'perl' in their Makefile, or
b) have a directory name of p5-*, or
c) have any dependency on any p5-* package

Like last time, where this caused no complaints.
2013-05-31 12:39:57 +00:00
asau
6929b96ca2 Revert pkglint-induced nonsense. 2013-04-08 18:29:37 +00:00
rodent
6b46c62d2e Edited DESCR in the case of:
File too long (should be no more than 24 lines).
 Line too long (should be no more than 80 characters).
 Trailing empty lines.
 Trailing white-space.
Trucated the long files as best as possible while preserving the most info
contained in them.
2013-04-07 20:49:31 +00:00
asau
bf5369e7bc Drop manual conflict registration, it conflicts with what we intend to do. 2013-02-28 07:18:15 +00:00
asau
2d29e5ff84 Update to OpenMPI 1.6.4
Here is a list of changes in v1.6.4 as compared to v1.6.3:

- Fix Cygwin shared memory and debugger plugin support.  Thanks to
  Marco Atzeri for reporting the issue and providing initial patches.
- Fix to obtaining the correct available nodes when a rankfile is
  providing the allocation.  Thanks to Siegmar Gross for reporting the
  problem.
- Fix process binding issue on Solaris.  Thanks to Siegmar Gross for
  reporting the problem.
- Updates for MXM 2.0.
- Major VT update to 5.14.2.3.
- Fixed F77 constants for Cygwin/Cmake build.
- Fix a linker error when configuring --without-hwloc.
- Automatically provide compiler flags that compile properly on some
  types of ARM systems.
- Fix slot_list behavior when multiple sockets are specified.  Thanks
  to Siegmar Gross for reporting the problem.
- Fixed memory leak in one-sided operations.  Thanks to Victor
  Vysotskiy for letting us know about this one.
- Added performance improvements to the OpenIB (OpenFabrics) BTL.
- Improved error message when process affinity fails.
- Fixed MPI_MINLOC on man pages for MPI_REDUCE(_LOCAL).  Thanks to Jed
  Brown for noticing the problem and supplying a fix.
- Made malloc hooks more friendly to IO interprosers.  Thanks to the
  bug report and suggested fix from Darshan maintainer Phil Carns.
- Restored ability to direct launch under SLURM without PMI support.
- Fixed MPI datatype issues on OpenBSD.
- Major VT update to 5.14.2.3.
- Support FCA v3.0+.
- Fixed header file problems on OpenBSD.
- Fixed issue with MPI_TYPE_CREATE_F90_REAL.
- Fix an issue with using external libltdl installations.  Thanks to
  opolawski for identifying the problem.
- Fixed MPI_IN_PLACE case for MPI_ALLGATHER for FCA.
- Allow SLURM PMI support to look in lib64 directories.  Thanks to
  Guillaume Papaure for the patch.
- Restore "use mpi" ABI compatibility with the rest of the 1.5/1.6
  series (except for v1.6.3, where it was accidentally broken).
- Fix a very old error in opal_path_access(). Thanks to Marco Atzeri
  for chasing it down.
2013-02-24 01:22:36 +00:00
marino
97fd0bedd8 parallel/openmpi: Add supplemental PLIST for DragonFly
DragonFly produces an shmem library in additional to the standard PLIST.
2012-12-15 10:41:58 +00:00
asau
2792fd7373 Update to OpenMPI 1.6.3
Version 1.6.3 is a minor bugfix release.
All users are encouraged to upgrade to v1.6.3 when possible.

Note that v1.6.3 is ABI compatible with the entire v1.5.x and
v1.6.x series, but is not ABI compatible with the v1.4.x series.
See http://www.open-mpi.org/software/ompi/versions/ for a
description of Open MPI's release methodology.

Here is a list of changes in v1.6.3 as compared to v1.6.2:

- Fix mpirun --launch-agent behavior when a prefix is specified.
  Thanks to Reuti for identifying the issue.
- Fixed memchecker configury.
- Brought over some compiler warning squashes from the development trunk.
- Fix spawning from a singleton to multiple hosts when the "add-host"
  MPI_Info key is used.  Thanks to Brian Budge for pointing out the
  problem.
- Add Mellanox ConnextIB IDs and max inline value.
- Fix rankfile when no -np is given.
- FreeBSD detection improvement.  Thanks to Brooks Davis for the
  patch.
- Removed TCP warnings on Windows.
- Improved collective algorithm selection for very large messages.
- Fix PSM MTL affinity settings.
- Fix issue with MPI_OP_COMMUTATIVE in the mpif.h bindings.  Thanks to
  Ake Sandgren for providing a patch to fix the issue.
- Fix issue with MPI_SIZEOF when using CHARACTER and LOGICAL types in
  the mpi module.  Thanks to Ake Sandgren for providing a patch to fix
  the issue.
2012-10-31 06:19:35 +00:00
asau
394c2661b9 Reexport libxml2 from hwloc.
Reexport hwloc from openmpi.
This should fix builds with MPI_TYPE=openmpi.
2012-10-24 05:49:25 +00:00
asau
fc09dcbfdf Update to OpenMPI 1.6.2
Don't build VampirTrace anymore, it will be introduced as separate package.


Changes in v1.6.2 as compared to v1.6.1:

- Fix issue with MX MTL. Thanks to Doug Eadline for raising the issue.
- Fix singleton MPI_COMM_SPAWN when the result job spans multiple nodes.
- Fix MXM hang, and update for latest version of MXM.
- Update to support Mellanox FCA 2.5.
- Fix startup hang for large jobs.
- Ensure MPI_TESTANY / MPI_WAITANY properly set the empty status when
  count==0.
- Fix MPI_CART_SUB behavior of not copying periods to the new
  communicator properly. Thanks to John Craske for the bug report.
- Add btl_openib_abort_not_enough_reg_mem MCA parameter to cause Open
  MPI to abort MPI jobs if there is not enough registered memory
  available on the system (vs. just printing a warning). Thanks to
  Brock Palen for raising the issue.
- Minor fix to Fortran MPI_INFO_GET: only copy a value back to the
  user's buffer if the flag is .TRUE.
- Fix VampirTrace compilation issue with the PGI compiler suite.
2012-10-17 23:27:34 +00:00
wiz
8b5d49eb78 Bump all packages that use perl, or depend on a p5-* package, or
are called p5-*.

I hope that's all of them.
2012-10-03 21:53:53 +00:00
asau
372426dca4 "user-destdir" is default these days 2012-09-11 20:32:10 +00:00
asau
ec8d0e067e Update to OpenMPI 1.6
Disable automatic detection of SGE and SLURM to avoid PLIST divergence.


Changes in OpenMPI 1.6

v1.6 is a major release; it effectively deprecates both the v1.4.x
and v1.5.x series, and replaces v1.4.x as the current "super stable" series.
A forthcoming v1.7 series will become the new "feature" series.

*All users* -- including production users and downstream providers --
are encouraged to upgrade to v1.6.

Note that v1.6 is ABI compatible with the entire v1.5.x series,
but is not ABI compatible with the v1.4.x series.
See http://www.open-mpi.org/software/ompi/versions/ for a description
of Open MPI's release methodology.


Here is a list of changes in v1.6 as compared to v1.5.5:

- Fix some process affinity issues.  When binding a process, Open MPI
  will now bind to all available hyperthreads in a core (or socket,
  depending on the binding options specified).
  --> Note that "mpirun --bind-to-socket ..." does not work on POWER6-
      and POWER7-based systems with some Linux kernel versions.  See
      the FAQ on the Open MPI web site for more information.
- Add support for ARM5 and ARM6 (in addition to the existing ARM7
  support).  Thanks to Evan Clinton for the patch.
- Minor Mellanox MXM fixes.
- Properly detect FDR10, FDR, and EDR OpenFabrics devices.
- Minor fixes to the mpirun(1) and MPI_Comm_create(3) man pages.
- Prevent segv if COMM_SPAWN_MULTIPLE fails.  Thanks to Fujitsu for
  the patch.
- Disable interposed memory management in fakeroot environments.  This
  fixes a problem in some build environments.
- Minor hwloc updates.
- Array versions of MPI_TEST and MPI_WAIT with a count==0 will now
  return immediately with MPI_SUCCESS.  Thanks to Jeremiah Willcock
  for the suggestion.
- Update VampirTrace to v5.12.2.
- Properly handle forwarding stdin to all processes when "mpirun
  --stdin all" is used.
- Workaround XLC assembly bug.
- OS X Tiger (10.3) has not been supported for a while, so forcibly
  abort configure if we detect it.
- Fix segv in the openib BTL when running on SPARC 64 systems.
- Fix some include file ordering issues on some BSD-based platforms.
  Thanks to Paul Hargove for this (and many, many other) fixes.
- Properly handle .FALSE. return parameter value to attribute copy
  callback functions.
- Fix a bunch of minor C++ API issues; thanks to Fujitsu for the patch.
- Fixed the default hostfile MCA parameter behavior.
- Per the MPI spec, ensure not to touch the port_name parameter to
  MPI_CLOSE_PORT (it's an IN parameter).
2012-06-12 23:36:30 +00:00
asau
9b2aabd492 Update to OpenMPI 1.5.5
Changes in 1.5.5
----------------

- Many, many portability configure/build fixes courtesy of Paul
  Hargrove.  Thanks, Paul!
- Fixed shared memory fault tolerance support compiler errors.
- Removed not-production-quality rshd and tmd PLM launchers.
- Minor updates to the Open MPI SRPM spec file.
- Fixed mpirun's --bind-to-socket option.
- A few MPI_THREAD_MULTIPLE fixes in the shared memory BTL.
- Upgrade the GNU Autotools used to bootstrap the 1.5/1.6 series to
  all the latest versions at the time of this release.
- Categorically state in the README that if you're having a problem
  with Open MPI with the Linux Intel 12.1 compilers, *upgrade your
  Intel Compiler Suite to the latest patch version*, and the problems
  will go away. :-)
- Fix the --without-memory-manager configure option.
- Fixes for Totalview/DDT MPI-capable debuggers.
- Update rsh/ssh support to properly handle the Mac OS X library path
  (i.e., DYLD_LIBRARY_PATH).
- Make warning about shared memory backing files on a networked file
  system be optional (i.e., can be disabled via MCA parameter).
- Several fixes to processor and memory affinity.
- Various shared memory infrastructure improvements.
- Various checkpoint/restart fixes.
- Fix MPI_IN_PLACE (and other MPI sentinel values) on OS X.  Thanks to
  Dave Goodell for providing the magic OS X gcc linker flags necessary.
- Various man page corrections and typo fixes.  Thanks to Fujitsu for
  the patch.
- Updated wrapper compiler man pages to list the various --showme
  options that are available.
- Add PMI direct-launch support (e.g., "srun mpi_application" under
  SLURM).
- Correctly compute the aligned address when packing the
  datatype description. Thanks to Fujitsu for the patch.
- Fix MPI obscure corner case handling in packing MPI datatypes.
  Thanks to Fujitsu for providing the patch.
- Workaround an Intel compiler v12.1.0 2011.6.233 vector optimization
  bug.
- Output the MPI API in ompi_info output.
- Major VT update to 5.12.1.4.
- Rankfile 'P'hysical mapping is no longer available.
- Upgrade embedded Hardware Locality (hwloc) v1.3.2, plus some
  post-1.3.2-release bug fixes.  All processor and memory binding is
  now done through hwloc.  Woo hoo!  Note that this fixes core binding
  on AMD Opteron 6200 and 4200 series-based systems (sometimes known
  as Interlagos, Valencia, or other Bulldozer-based chips).
- New MCA parameters to control process-wide memory binding policy:
  hwloc_base_mem_alloc_policy, hwloc_base_mem_bind_failure_action (see
  ompi_info --param hwloc base).
- Removed direct support for libnuma.  Libnuma support may now be
  picked up through hwloc.
- Added MPI_IN_PLACE support to MPI_EXSCAN.
- Various fixes for building on Windows, including MinGW support.
- Removed support for the OpenFabrics IBCM connection manager.
- Updated Chelsio T4 and Intel NE OpenFabrics default buffer settings.
- Increased the default RDMA CM timeout to 30 seconds.
- Issue a warning if both btl_tcp_if_include and btl_tcp_if_exclude
  are specified.
- Many fixes to the Mellanox MXM transport.
2012-05-28 18:38:17 +00:00
marino
af902875ce parallel/openmpi: Fix PLIST for DragonFly 2012-05-21 16:08:51 +00:00
asau
e017fdcad9 Prevent detection of OpenMP support in order to make PLIST consistent. 2011-12-27 23:15:35 +00:00
sbd
e93e5d65e3 Recursive bump for graphics/freetype2 buildlink addition. 2011-11-01 06:11:52 +00:00
asau
7d5be1f025 Update to OpenMPI 1.5.4
Changes in v1.5.4 as compared to v1.5.3:

- Add support for the (as yet unreleased) Mellanox MXM transport.
- Add support for dynamic service levels (SLs) in the openib BTL.
- Fixed C++ bindings cosmetic/warnings issue with
  MPI::Comm::NULL_COPY_FN and MPI::Comm::NULL_DELETE_FN.  Thanks to
  Julio Hoffimann for identifying the issues.
- Also allow the word "slots" in rankfiles (i.e., not just "slot").
  (** also to appear in 1.4.4)
- Add Mellanox ConnectX 3 device IDs to the openib BTL defaults.
  (** also to appear in 1.4.4)
- Various FCA updates.
- Fix 32 bit SIGBUS errors on Solaris SPARC platforms.
- Add missing ARM assembly code files.
- Update to allow more than 128 entries in an appfile.
  (** also to appear in 1.4.4)
- Various VT updates and bug fixes.
- Update description of btl_openib_cq_size to be more accurate.
  (** also to appear in 1.4.4)
- Various assembly "clobber" fixes.
- Fix a hang in carto selection in obscure situations.
- Guard the inclusion of execinfo.h since not all platforms have it.  Thanks
  to Aleksej Saushev for identifying this issue.
  (** also to appear in 1.4.4)
- Support Solaris legacy munmap prototype changes.
  (** also to appear in 1.4.4)
- Updated to Automake 1.11.1 per
  http://www.open-mpi.org/community/lists/devel/2011/07/9492.php.
- Fix compilation of LSF support.
- Update MPI_Comm_spawn_multiple.3 man page to reflect what it
  actually does.
- Fix for possible corruption of the environment.  Thanks to Peter
  Thompson for the suggestion.  (** also to appear in 1.4.4)
- Enable use of PSM on direct-launch SLURM jobs.
- Update paffinity hwloc to v1.2, and to fix minor bugs affinity
  assignment bugs on PPC64/Linux platforms.
- Let the openib BTL auto-detect its bandwidth.
- Support new MPI-2.2 datatypes.
- Updates to support more datatypes in MPI one-sided communication.
- Fix recursive locking bug when MPI-IO was used with
  MPI_THREAD_MULTIPLE.  (** also to appear in 1.4.4)
- Fix mpirun handling of prefix conflicts.
- Ensure mpirun's --xterm options leaves sessions attached.
  (** also to appear in 1.4.4)
- Fixed type of sendcounts and displs in the "use mpi" F90 module.
  ABI is preserved, but applications may well be broken.  See the
  README for more details.  Thanks to Stanislav Sazykin for
  identifying the issue.  (** also to appear in 1.4.4)
- Fix indexed datatype leaks.  Thanks to Pascal Deveze for supplying
  the initial patch.  (** also to appear in 1.4.4)
- Fix debugger mapping when mpirun's -npernode option is used.
- Fixed support for configure's --disable-dlopen option when used with
  "make distclean".
- Fix segv associated with MPI_Comm_create with MPI_GROUP_EMPTY.
  Thanks to Dominik Goeddeke for finding this.
  (** also to appear in 1.4.4)
- Improved LoadLeveler ORTE support.
- Add new WindVerbs BTL plugin, supporting native OpenFabrics verbs on
  Windows (the "wv" BTL).
- Add new btl_openib_gid_index MCA parameter to allow selecting which
  GID to use on an OpenFabrics device's GID table.
- Add support for PCI relaxed ordering in the OpenFabrics BTL (when
  available).
- Update rsh logic to allow correct SGE operation.
- Ensure that the mca_paffinity_alone MCA parameter only appears once
  in the ompi_info output.  Thanks to Gus Correa for identifying the
  issue.
- Fixed return codes from MPI_PROBE and MPI_IPROBE.
  (** also to appear in 1.4.4)
- Remove --enable-progress-thread configure option; it doesn't work on
  the v1.5 branch.  Rename --enable-mpi-threads to
  --enable-mpi-thread-multiple.  Add new --enable-opal-multi-threads
  option.
- Updates for Intel Fortran compiler version 12.
- Remove bproc support.  Farewell bproc!
- If something goes wrong during MPI_INIT, fix the error
  message to say that it's illegal to invoke MPI_INIT before
  MPI_INIT.
2011-08-27 19:32:55 +00:00
asau
c80c1fd2e4 Update to OpenMPI 1.5.3:
1.5.3
-----

- Add missing "affinity" MPI extension (i.e., the OMPI_Affinity_str()
  API) that was accidentally left out of the 1.5.2 release.


1.5.2
-----

- Replaced all custom topology / affinity code with initial support
  for hwloc v1.1.1 (PLPA has been removed -- long live hwloc!).  Note
  that hwloc is bundled with Open MPI, but an external hwloc can be
  used, if desired.  See README for more details.
- Many CMake updates for Windows builds.
- Updated opal_cr_thread_sleep_wait MCA param default value to make it
  less aggressive.
- Updated debugger support to allow Totalview attaching from jobs
  launched directly via srun (not mpirun).  Thanks to Nikolay Piskun
  for the patch.
- Added more FTB/CIFTS support.
- Fixed compile error with the PGI compiler.
- Portability fixes to allow the openib BTL to run on the Solaris
  verbs stack.
- Fixed multi-token command-line issues when using the mpirun
  --debug switch.  For example:
      mpirun --debug -np 2 a.out "foo bar"
  Thanks to Gabriele Fatigati for reporting the issue.
- Added ARM support.
- Added the MPI_ROOT environment variable in the Open MPI Linux SRPM
  for customers who use the BPS and LSF batch managers.
- Updated ROMIO from MPICH v1.3.1 (plus one additional patch).
- Fixed some deprecated MPI API function notification messages.
- Added new "bfo" PML that provides failover on OpenFabrics networks.
- Fixed some buffer memcheck issues in MPI_*_init.
- Added Solaris-specific chip detection and performance improvements.
- Fix some compile errors on Solaris.
- Updated the "rmcast" framework with bug fixes, new functionality.
- Updated the Voltaire FCA component with bug fixes, new
  functionality.  Support for FCA version 2.1.
- Fix gcc 4.4.x and 4.5.x over-aggressive warning notifications on
  possibly freeing stack variables.  Thanks to the Gentoo packagers
  for reporting the issue.
- Make the openib component be verbose when it disqualifies itself due
  to MPI_THREAD_MULTIPLE.
- Minor man page fixes.
- Various checkpoint / restart fixes.
- Fix race condition in the one-sided unlock code.  Thanks to
  Guillaume Thouvenin for finding the issue.
- Improve help message aggregation.
- Add OMPI_Affinity_str() optional user-level API function (i.e., the
  "affinity" MPI extension).  See README for more details.
- Added btl_tcp_if_seq MCA parameter to select a different ethernet
  interface for each MPI process on a node.  This parameter is only
  useful when used with virtual ethernet interfaces on a single
  network card (e.g., when using virtual interfaces give dedicated
  hardware resources on the NIC to each process).
- Changed behavior of mpirun to terminate if it receives 10 (or more)
  SIGPIPEs.
- Fixed oversubscription detection.
- Added new mtl_mx_board and mtl_mx_endpoint MCA parameters.
- Added ummunotify support for OpenFabrics-based transports.  See the
  README for more details.
2011-03-23 05:32:29 +00:00
asau
aa90e64631 Update to OpenMPI 1.5.1
Changes in 1.5.1

- Fixes for the Oracle Studio 12.2 Fortran compiler.
- Fix SPARC and SPARCv9 atomics.  Thanks to Nicola Stange for the
  initial patch.
- Fix Libtool issues with the IBM XL compiler in 64-bit mode.
- Restore the reset of the libevent progress counter to avoid
  over-sampling the event library.
- Update memory barrier support.
- Use memmove (instead of memcpy) when necessary (e.g., source and
  destination overlap).
- Fixed ompi-top crash.
- Fix to handle Autoconf --program-transforms properly and other
  m4/configury updates.  Thanks to the GASNet project for the
  --program transforms fix.
- Allow hostfiles to specify usernames on a per-host basis.
- Update wrapper compiler scripts to search for perl during configure,
  per request from the BSD maintainers.
- Minor man page fixes.
- Added --with-libltdl option to allow building Open MPI with an
  external installation of libltdl.
- Fixed various issues with -D_FORTIFY_SOURCE=2.
- Various VT fixes and updates.


Notable changes in 1.5

- Added "knem" support: direct process-to-process copying for shared
  memory message passing.  See http://runtime.bordeaux.inria.fr/knem/
  and the README file for more details.
- Updated shared library versioning scheme and linking style of MPI
  applications.  The MPI application ABI has been broken from the
  v1.3/v1.4 series.  MPI applications compiled against any prior
  version of Open MPI will need to, at a minimum, re-link.  See the
  README file for more details.
- Added "fca" collective component, enabling MPI collective offload
  support for Voltaire switches.
- Fixed MPI one-sided operations with large target displacements.
  Thanks to Brian Price and Jed Brown for reporting the issue.
- Fixed MPI_GET_COUNT when used with large counts.  Thanks to Jed
  Brown for reporting the issue.
- Made the openib BTL safer if extremely low SRQ settings are used.
- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE (** also to appear: 1.4.3).
- Fixed malloc(0) warnings in some collectives.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue (** also to appear: 1.4.3).
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch (** also to appear: 1.4.3).
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue
  (** also to appear: 1.4.3).
- Fixed extra_state parameter types in F90 prototypes for
  MPI_COMM_CREATE_KEYVAL, MPI_GREQUEST_START, MPI_REGISTER_DATAREP,
  MPI_TYPE_CREATE_KEYVAL, and MPI_WIN_CREATE_KEYVAL.
- Fixes for Solaris oversubscription detection.
- If the PML determines it can't reach a peer process, print a
  slightly more helpful message.  Thanks to Nick Edmonds for the
  suggestion.
- Make btl_openib_if_include/exclude function the same way
  btl_tcp_if_include/exclude works (i.e., supplying an _include list
  overrides supplying an _exclude list).
- Apply more scalable reachability algorithm on platforms with more
  than 8 TCP interfaces.
- Various assembly code updates for more modern platforms / compilers.
- Relax restrictions on using certain kinds of MPI datatypes with
  one-sided operations.  Users beware; not all MPI datatypes are valid
  for use with one-sided operations!
- Improve behavior of MPI_COMM_SPAWN with regards to --bynode.
- Various threading fixes in the openib BTL and other core pieces of
  Open MPI.
- Various help file and man pages updates.
- Various FreeBSD and NetBSD updates and fixes.  Thanks to Kevin
  Buckley and Aleksej Saushev for their work.
- Fix case where freeing communicators in MPI_FINALIZE could cause
  process failures.
- Print warnings if shared memory state files are opened on what look
  like networked filesystems.
- Update libevent to v1.4.13.
- Allow propagating signals to processes that call fork().
- Fix bug where MPI_GATHER was sometimes incorrectly examining the
  datatype on non-root processes.  Thanks to Michael Hofmann for
  investigating the issue.
- Various Microsoft Windows fixes.
- Various Catamount fixes.
- Various checkpoint / restart fixes.
- Xgrid support has been removed until it can be fixed (patches
  would be welcome).
- Added simplistic "libompitrace" contrib package.  Using the MPI
  profiling interface, it essentially prints out to stderr when select
  MPI functions are invoked.
- Update bundled VampirTrace to v5.8.2.
- Add pkg-config(1) configuration files for ompi, ompi-c, ompi-cxx,
  ompi-f77, ompi-f90.  See the README for more details.
- Removed the libopenmpi_malloc library (added in the v1.3 series)
  since it is no longer necessary
- Add several notifier plugins (generally used when Open MPI detects
  system/network administrator-worthy problems); each have their own
  MCA parameters to govern their usage.  See "ompi_info --param
  notifier <name>" for more details.
  - command to execute arbitrary commands (e.g., run a script).
  - file to send output to a file.
  - ftb to send output to the Fault Tolerant Backplane (see
    http://wiki.mcs.anl.gov/cifts/index.php/CIFTS)
  - hnp to send the output to mpirun.
  - smtp (requires libesmtp) to send an email.
2010-12-16 21:00:53 +00:00
asau
f2facf4d36 Does remove this patch (empty now). 2010-11-24 01:57:29 +00:00
asau
859ffc5347 Update to OpenMPI 1.4.3
New in 1.4.3
------------

- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue.
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch.
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue.
- Fixed various MPI_THREAD_MULTIPLE race conditions.
- Fixed an issue with an undeclared variable from ptmalloc2 munmap on
  BSD systems.
- Fixes for BSD interface detection.
- Various other BSD fixes.  Thanks to Kevin Buckley helping to track.
  all of this down.
- Fixed issues with the use of the -nper* mpirun command line arguments.
- Fixed an issue with coll tuned dynamic rules.
- Fixed an issue with the use of OPAL_DESTDIR being applied too aggressively.
- Fixed an issue with one-sided xfers when the displacement exceeds 2GBytes.
- Change to ensure TotalView works properly on Darwin.
- Added support for Visual Studio 2010.
- Fix to ensure proper placement of VampirTrace header files.
- Needed to add volatile keyword to a varialbe used in debugging
  (MPIR_being_debugged).
- Fixed a bug in inter-allgather.
- Fixed malloc(0) warnings.
- Corrected a typo the MPI_Comm_size man page (intra -> inter).  Thanks
  to Simon number.cruncher for pointing this out.
- Fixed a SegV in orted when given more than 127 app_contexts.
- Removed xgrid source code from the 1.4 branch since it is no longer
  supported in the 1.4 series.
- Removed the --enable-opal-progress-threads config option since
  opal progress thread support does not work in 1.4.x.
- Fixed a defect in VampirTrace's vtfilter.
- Fixed wrong Windows path in hnp_contact.
- Removed the requirement for a paffinity component.
- Removed a hardcoded limit of 64 interconnected jobs.
- Fix to allow singletons to use ompi-server for rendezvous.
- Fixed bug in output-filename option.
- Fix to correctly handle failures in mx_init().
- Fixed a potential Fortran memory leak.
- Fixed an incorrect branch in some ppc32 assembly code.  Thanks
  to Matthew Clark for this fix.
- Remove use of undocumented AS_VAR_GET macro during configuration.
- Fixed an issue with VampirTrace's wrapper for MPI_init_thread.
- Updated mca-btl-openib-device-params.ini file with various new vendor id's.
- Configuration fixes to ensure CPPFLAGS in handled properly if a non-standard
  valgrind location was specified.
- Various man page updates
2010-11-24 01:56:13 +00:00
asau
dfc6889736 "fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.
2010-07-30 10:36:22 +00:00
asau
d1e81b58b6 Update to OpenMPI 1.4.2
Changes in v1.4.2 as compared to v1.4.1:

- Fixed problem when running in heterogeneous environments.
- Update LSF support to ensure that the path is passed correctly.
- Fixed some miscellaneous oversubscription detection bugs.
- IBM re-licensed its LoadLeveler code to be BSD-compliant.
- Various fixes for multithreading deadlocks, race conditions, and
  other nefarious things.
- Fixed ROMIO's handling of "nearly" contiguous issues (e.g., with
  non-zero true_lb).
- Bunches of Windows build fixes.
- Now allow the graceful failover from MTLs to BTLs if no MTLs can
  initialize successfully.
- Added "clobber" information to various atomic operations, fixing
  erroneous behavior in some newer versions of the GNU compiler suite.
- Update various iWARP and InfiniBand device specifications in the
  OpenFabrics .ini support file.
- Fix the use of hostfiles when a username is supplied.
- Various fixes for rankfile support.
- Updated the internal version of VampirTrace to 5.4.12.
- Fixed OS X TCP wireup issues having to do with IPv4/IPv6 confusion
  (see https://svn.open-mpi.org/trac/ompi/changeset/22788 for more
  details).
- Fixed some problems in processor affinity support, including when
  there are "holes" in the processor namespace (e.g., offline
  processors).
- Ensure that Open MPI's "session directory" (usually located in /tmp)
  is cleaned up after process termination.
- Fixed some problems with the collective "hierarch" implementation
  that could occur in some obscure conditions.
- Various MPI_REQUEST_NULL, API parameter checking, and attribute
  error handling fixes.
- Fix case where MPI_GATHER erroneously used datatypes on non-root nodes.
- Patched ROMIO support for PVFS2 > v2.7 (patch taken from MPICH2
  version of ROMIO).
- Fixed "mpirun --report-bindings" behavior when used with
  mpi_paffinity_alone=1.  Also fixed mpi_paffinity_alone=1 behavior
  with non-MPI applications.
- Ensure that all OpenFabrics devices have compatible receive_queues
  specifications before allowing them to communicate.  See the lengthy
  comment in https://svn.open-mpi.org/trac/ompi/changeset/22592 for details.
- Fix some issues with checkpoint/restart.
- Improve the pre-MPI_INIT/post-MPI_FINALIZE error messages.
- Ensure that loopback addresses are never advertised to peer
  processes for RDMA/OpenFabrics support.
- Fixed a CSUM PML false positive.
- Various fixes for Catamount support.
- Minor update to wrapper compilers in how user-specific argv is
  ordered on the final command line.  Thanks to Jed Brown for the
  suggestions.
2010-05-14 20:12:58 +00:00
asau
a8dd225f2a Update to OpenMPI 1.4.1:
- Update to PLPA v1.3.2, addressing a licensing issue identified by
  the Fedora project.  See
  https://svn.open-mpi.org/trac/plpa/changeset/262 for details.
- Add check for malformed checkpoint metadata files (Ticket #2141).
- Fix error path in ompi-checkpoint when not able to checkpoint
  (Ticket #2138).
- Cleanup component release logic when selecting checkpoint/restart
  enabled components (Ticket #2135).
- Fixed VT node name detection for Cray XT platforms, and fixed some
  broken VT documentation files.
- Fix a possible race condition in tearing down RDMA CM-based
  connections.
- Relax error checking on MPI_GRAPH_CREATE.  Thanks to David Singleton
  for pointing out the issue.
- Fix a shared memory "hang" problem that occurred on x86/x86_64
  platforms when used with the GNU >=4.4.x compiler series.
- Add fix for Libtool 2.2.6b's problems with the PGI 10.x compiler
  suite.  Inspired directly from the upstream Libtool patches that fix
  the issue (but we need something working before the next Libtool
  release).
2010-01-19 00:45:58 +00:00
joerg
3fbb207985 Recursive bump for libltdl 2009-12-15 21:54:17 +00:00
asau
cc3e5cec8f Conflicts with "mpich" and "mpich2" packages.
Noticed by Helge Muehlmeier.
2009-12-15 11:45:54 +00:00
asau
43b8814eca Import OpenMPI 1.4 as parallel/openmpi.
OpenMPI is open source MPI-2 implementation.
2009-12-12 23:30:01 +00:00