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3206 commits

Author SHA1 Message Date
asau
fafce37539 Update to Octave 3.6.2
Summary of important user-visible changes for version 3.6:
---------------------------------------------------------

 ** The PCRE library is now required to build Octave.  If a pre-compiled
    package does not exist for your system, you can find PCRE sources
    at http://www.pcre.org

 ** The ARPACK library is no longer distributed with Octave.
    If you need the eigs or svds functions you must provide an
    external ARPACK through a package manager or by compiling it
    yourself.  If a pre-compiled package does not exist for your system,
    you can find the current ARPACK sources at
    http://forge.scilab.org/index.php/p/arpack-ng

 ** Many of Octave's binary operators (.*, .^, +, -, ...) now perform
    automatic broadcasting for array operations which allows you to use
    operator notation instead of calling bsxfun or expanding arrays (and
    unnecessarily wasting memory) with repmat or similar idioms.  For
    example, to scale the columns of a matrix by the elements of a row
    vector, you may now write

      rv .* M

    In this expression, the number of elements of rv must match the
    number of columns of M.  The following operators are affected:

      plus      +  .+
      minus     -  .-
      times     .*
      rdivide   ./
      ldivide   .\
      power     .^  .**
      lt        <
      le        <=
      eq        ==
      gt        >
      ge        >=
      ne        !=  ~=
      and       &
      or        |
      atan2
      hypot
      max
      min
      mod
      rem
      xor

    additionally, since the A op= B assignment operators are equivalent
    to A = A op B, the following operators are also affected:

      +=  -=  .+=  .-=  .*=  ./=  .\=  .^=  .**=  &=  |=

    See the "Broadcasting" section in the new "Vectorization and Faster
    Code Execution" chapter of the manual for more details.

 ** Octave now features a profiler, thanks to the work of Daniel Kraft
    under the Google Summer of Code mentorship program.  The manual has
    been updated to reflect this addition.  The new user-visible
    functions are profile, profshow, and profexplore.

 ** Overhaul of statistical distribution functions

    Functions now return "single" outputs for inputs of class "single".

    75% reduction in memory usage through use of logical indexing.

    Random sample functions now use the same syntax as rand and accept
    a comma separated list of dimensions or a dimension vector.

    Functions have been made Matlab-compatible with regard to special
    cases (probability on boundaries, probabilities for values outside
    distribution, etc.).  This may cause subtle changes to existing
    scripts.

    negative binomial function has been extended to real, non-integer
    inputs.  The discrete_inv function now returns v(1) for 0 instead of
    NaN.  The nbincdf function has been recoded to use a closed form
    solution with betainc.

 ** strread, textscan, and textread have been completely revamped.

    They now support nearly all Matlab functionality including:

      * Matlab-compatible whitespace and delimiter defaults

      * Matlab-compatible options: 'whitespace', treatasempty', format
        string repeat count, user-specified comment style, uneven-length
        output arrays, %n and %u conversion specifiers (provisionally)

 ** All .m string functions have been modified for better performance or
    greater Matlab compatibility.  Performance gains of 15X-30X have
    been demonstrated.  Operations on cell array of strings no longer pay
    quite as high a penalty as those on 2-D character arrays.

      deblank:  Now requires character or cellstr input.

      strtrim:  Now requires character or cellstr input.
                No longer trims nulls ("\0") from string for Matlab
                compatibility.

      strmatch: Follows documentation precisely and ignores trailing spaces
                in pattern and in string.  Note that this is documented
                Matlab behavior but the implementation apparently does
                not always follow it.

      substr:   Now possible to specify a negative LEN option which
                extracts to within LEN of the end of the string.

      strtok:   Now accepts cellstr input.

      base2dec, bin2dec, hex2dec:
                Now accept cellstr inputs.

      dec2base, dec2bin, dec2hex:
                Now accept cellstr inputs.

      index, rindex:
                Now accept 2-D character array input.

      strsplit: Now accepts 2-D character array input.

 ** Geometry functions derived from Qhull (convhull, delaunay, voronoi)
    have been revamped.  The options passed to the underlying qhull
    command have been changed for better results or for Matlab
    compatibility.

      convhull: Default options are "Qt" for 2D, 3D, 4D inputs
                Default options are "Qt Qx" for 5D and higher

      delaunay: Default options are "Qt Qbb Qc Qz" for 2D and 3D inputs
                Default options are "Qt Qbb Qc Qx" for 4D and higher

      voronoi:  No default arguments

 ** Date/Time functions updated.  Millisecond support with FFF format
    string now supported.

    datestr: Numerical formats 21, 22, 29 changed to match Matlab.
             Now accepts cellstr input.

 ** The following warning IDs have been removed:

      Octave:associativity-change
      Octave:complex-cmp-ops
      Octave:empty-list-elements
      Octave:fortran-indexing
      Octave:precedence-change

 ** The warning ID Octave:string-concat has been renamed to
    Octave:mixed-string-concat.

 ** Octave now includes the following Matlab-compatible preference
    functions:

      addpref  getpref  ispref  rmpref  setpref

 ** The following Matlab-compatible handle graphics functions have been
    added:

      guidata         uipanel        uitoolbar
      guihandles      uipushtool     uiwait
      uicontextmenu   uiresume       waitfor
      uicontrol       uitoggletool

    The uiXXX functions above are experimental.

    Except for uiwait and uiresume, the uiXXX functions are not
    supported with the FLTK+OpenGL graphics toolkit.

    The gnuplot graphics toolkit does not support any of the uiXXX
    functions nor the waitfor function.

 ** New keyword parfor (parallel for loop) is now recognized as a valid
    keyword.  Implementation, however, is still mapped to an ordinary
    for loop.

 ** Other new functions added in 3.6.0:

      bicg                       nthargout                   usejava
      is_dq_string               narginchk                   waitbar
      is_sq_string               python                      zscore
      is_function_handle         register_graphics_toolkit
      loaded_graphics_toolkits   recycle

 ** Deprecated functions.

    The following functions were deprecated in Octave 3.2 and have been
    removed from Octave 3.6.

      create_set          spcholinv    splu
      dmult               spcumprod    spmax
      iscommand           spcumsum     spmin
      israwcommand        spdet        spprod
      lchol               spdiag       spqr
      loadimage           spfind       spsum
      mark_as_command     sphcat       spsumsq
      mark_as_rawcommand  spinv        spvcat
      spatan2             spkron       str2mat
      spchol              splchol      unmark_command
      spchol2inv          split        unmark_rawcommand

    The following functions have been deprecated in Octave 3.6 and will
    be removed from Octave 3.10 (or whatever version is the second major
    release after 3.6):

      cut                is_duplicate_entry
      cor                polyderiv
      corrcoef           shell_cmd
      __error_text__     studentize
      error_text         sylvester_matrix

 ** The following functions have been modified for Matlab compatibility:

      randperm
2012-07-05 19:18:29 +00:00
drochner
712f5743e6 update to 6.4.2.1
This switches to the gnome-3.4 branch
2012-07-04 20:01:58 +00:00
joerg
dc8524259a Fix main when using C++ test cases 2012-07-03 17:42:48 +00:00
joerg
99a1942248 Fix template usage. 2012-07-03 17:42:05 +00:00
adam
9fde0ec108 Revbump after updating boost 2012-07-02 13:37:35 +00:00
dholland
f91b8b8497 Add desktopdb.mk and bump PKGREVISION for 118 packages as reported by
pkglint. If any of these are wrong for some reason, please revert/adjust.
2012-07-01 19:05:10 +00:00
asau
73ceaf0866 Update to Mathomatic 16.0.0
CHANGES MADE TO MATHOMATIC 15.8.5 TO BRING IT UP TO THE NEXT VERSION:

Code, documentation, and user interface improvements, corrections,
and cleanup.  Fixed many possible bugs, some where the wrong level global
expression buffers were being used.

05/26/12 - Push command improved with better responses.  Same functionality.

           In the source code, tune-up variable integer_coefficients was
           renamed to "factor_out_all_numeric_gcds", because Mathomatic always
           tries to have integer coefficients this year, but it doesn't always
           factor out all numeric GCDs unless factor_out_all_numeric_gcds
           is true, or the factor command is used.  The default is false,
           for more orderly and revealing coefficients.
           Of course, much of what Mathomatic does is
           try to improve readability and simplicity.
           There is no need to set this variable, just use the factor command.

05/27/12 - Removed C declarations for memmove(3), the defaults in
           /usr/include/string.h are probably better and what's wanted in
           every case.  It would be very odd if this didn't work 100%.

05/28/12 - readline history file renamed to "~/.matho_history" from
           "~/.mathomatic_history".  File name was too long for CygWin.
           Tested thoroughly compiling, installing, and running under
           the latest CygWin.  Works fine, except for rlwrap.  "rlwrap -v"
           returns with error, a successful return is how I test for its
           existence.

           Made output redirection work with the "list primes" command.

06/02/12 - Cleanup of Linux, Mac OS X, and Windows binary distributions.
           The Windows binary distribution now includes m4 scripts, in case
           CygWin is installed, allowing use of m4 Mathomatic in Windows.

           Fixed MinGW version to not output two carriage returns at the
           end of every line of list command output.

06/03/12 - If compiled with -DSHOW_RESOURCES, will give total CPU usage and
           RSS size in the "version status" command.  Requires OS support.
           Some OSes will show even more information.  Uses getrusage(2).

06/04/12 - Allow breaking out of user line-input requests with Control-C.
           Still have to hit the Enter key, but the command will be aborted.

06/05/12 - Added "lib/example.c", the simplest example yet of Symbolic Math
           Library usage.  Compile with "compile.testmain" or practice
           compiling it by hand.

           The simplify command now returns the number of expressions
           simplified, so you can tell if "simplify sign" worked.

           The solve command can now require verification, by using the
           "verifiable" option, instead of the "verify" option.  This causes
           unverifiable solves to return with failure, aborting any reads.

           Fixed missing code in internal C function free_mem().
           I don't think it was used by anyone.  A call to free_mem() is
           now made on exit, if Mathomatic is compiled with -DVALGRIND, to
           check for memory leaks.

06/08/12 - Added polynomial factoring to GCD result of divide command.
           It is always handy to know what the factors are of the GCD.

           Allow comma (,) at the end of most input lines.  A comma now
           terminates an expression instead of giving an error.  Allow
           commas all over the place, where-ever logical, in any
           Mathomatic command-line.  They are used as separators,
           more so than spaces.

06/09/12 - Cleaned up variables command to always allow the count parameter,
           and to line up everything with 8 character wide tabs.

           Added ability to place the definite integration bounds on the
           integrate command-line, just like the nintegrate command.

           Added titles to most help command pages.

06/10/12 - The "factor number" command works much nicer now, and allows comma
           separators and zero.

           Developers should note that to remain the same as past versions,
           HTML mode needs to be "set html all" to output HTML at all times
           in both the application and the symbolic math library, even when
           redirecting output.  Now setting all HTML mode with
           "make pdfsheet".  "set html" only outputs HTML code to standard
           output.

06/13/12 - Added warning in "misc/known_bugs.txt" about LLVM/Clang optimizer
           failure when compiling Mathomatic with LLVM/Clang instead of gcc.
           If you enable any optimization at all, entering (32^.5) and the
           like will hang Mathomatic, putting it in an endless loop.
           So when compiling Mathomatic with LLVM/Clang, always disable
           optimization with "-O0", so that it will then run and pass
           all of the tests in 1 second and not be infinitely slower.
           Mathomatic will hang during "make test"
           if compiled with optimization enabled using LLVM.  Mathomatic is
           not noticeably slower when compiled without any optimization,
           because everything is memmove(3)s and floating point arithmetic.

06/15/12 - Added repeat option to replace command.  A handy feature that
           lets you try plugging different values into an equation.  It
           checks if the result is an identity, too.

06/18/12 - The version command now has a "status" option, which behaves
           as before, displaying all version and status information.
           The version command by itself now only displays the Mathomatic
           version number.  Running "mathomatic -v" is now a good way of
           testing for the existence of Mathomatic on your system, only
           outputting the version number to standard output and exiting
           successfully.

06/19/12 - Removed the parenthesizing of variable names in all messages.

           If the current expression is a non-equation, then prefixing or
           suffixing an expression with "=" will add that expression as
           the other equation side now, conveniently making it an equation
           you can solve.

06/22/12 - Added equation number ranges option to tally command.  Type
           "tally -" to resume if the current equation hasn't changed.  Type
           "tally all" to add together all stored expressions as the starting
           value.  Specifying equation numbers or ranges will silently add
           them, then prompt for the next things to add.  The average option
           now displays the number of entries (count) each time the average
           is displayed.  When you exit by typing an empty line, the current
           total is saved in the next available equation space and made
           current, so it can easily resume with "tally -".  "-" by itself
           always means the current equation.

           gnuplot now works with MS-Windows better.  Tried running a Windows
           gnuplot test from scratch, without Cygwin, and it didn't work.
           It should be mostly fixed now.  So go ahead and try plotting
           in Windows, after downloading and installing gnuplot.  Please
           complain if any problems.

           Fixed a long-running problem with the plot command, by asking the
           user questions, only if needed, so that gnuplot will not give an
           error if you are multi-expression plotting.

06/23/12 - Moved load_rc() out of main.c so that the Mathomatic startup set
           options file can be loaded by the library, if the developer wishes.
           Changed a few things so that "set save" and "set no save" will work
           if load_rc() is called beforehand.

06/25/12 - The simplify command has been fixed for optimal integer coefficient
           factoring results and so "180*(sides-2)" simplification works
           nicely, by keeping the result the same as the start by
           factoring out rational constants greater than 1 (this is new),
           along with less than 1,
           if the coefficients remain or become integers.

           Many things cleaned up and finished, like the official
           documentation, the "code integer" command, and "examples/fact.c".

06/27/12 - Allow an ASCII string after the "set save" command, to save only
           that string in ~/.mathomaticrc, so that string, which should be set
           options, is for every Mathomatic session to start with.
           For example, "set save bold color" will start out Mathomatic in
           bold color mode every time.  Enter "set no save" to remove.
           "set save" by itself saves all of the current set options for every
           future session.

Mathomatic version 16.0.0 released Friday 06/29/12.
2012-07-01 08:02:04 +00:00
dholland
523eb32ad6 This blows up on python25 and it doesn't really seem like it's worth
trying to figure out what's wrong, so just mark it INCOMPATIBLE.
2012-06-16 05:40:05 +00:00
markd
e43be93ef2 Update to KDE SC 4.8.4
Bug fixes.
2012-06-16 04:45:28 +00:00
taca
8be70336fa Update ruby-spreadsheet to 0.7.2.
=== 0.7.2 / 14.06.2012

* many changes by Mina Naguib <mina.git@naguib.ca>
* see git log for full details
2012-06-15 13:55:09 +00:00
asau
953f3dcd69 Provide TEST_TARGET. 2012-06-14 08:26:14 +00:00
asau
f0c3d8af40 The package doesn't install HTML files, remove unneeded patch. 2012-06-14 08:24:14 +00:00
sbd
21792a9296 Recursive PKGREVISION bump for libxml2 buildlink addition. 2012-06-14 07:43:06 +00:00
asau
aa8cd8f145 PCRE is no longer optional. 2012-06-06 23:14:10 +00:00
obache
da6442717f Update py-gmpy to 1.15.
Based on PR 46507 by Wen Heping.
* let to register egg-info.
* all files in distfile are not DOS style EOL oter than Windows related files,
  so remove extract option for ZIP.

GMPY 1.15 is a bug fix release. The following bugs were fixed:
* Reference counting leak in divmod(x,0).
* Fatal crash in remove(x,1).
* Discontinue use of custom memory allocator. (Fixes compatibility with Sage.)
* Allow up to base-62 integer conversion.
2012-06-02 13:52:06 +00:00
obache
0e2f0c9d23 remove buildlink3.mk, this package have no contents to buildlink. 2012-06-02 13:38:56 +00:00
obache
f57e210a7c Update py-networkx to 1.6.
Based on PR 46506 by Wen Heping.
* let to register egg-info.
* marked as incompatible with python 2.5, as new features in 1.3.
  but not marked as compatible with 3.x, one file will not be compiled well
  both 3.1 and 3.2.

Lease Log:

Networkx-1.6

Release date: 20 November 2011

Highlights

New functions for finding articulation points, generating random bipartite
graphs, constructing adjacency matrix representations, forming graph products,
computing assortativity coefficients, measuring subgraph centrality and
communicability, finding k-clique communities, and writing JSON format output.

New examples for drawing with D3 Javascript library, and ordering matrices with
the Cuthill-McKee algorithm.

More memory efficient implementation of current-flow betweenness and new
approximation algorithms for current-flow betweenness and shortest-path
betweenness.

Simplified handling of "weight" attributes for algorithms that use
weights/costs/values. See Version 1.6 notes and API changes.

Updated all code to work with the PyPy Python implementation http://pypy.org
which produces faster performance on many algorithms.

For full details of the tickets closed for this release (added features and bug
fixes) see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.6

API Changes

See Version 1.6 notes and API changes:
	http://networkx.lanl.gov/reference/api_1.6.html

Networkx-1.5

Release date: 4 June 2011

For full details of the tickets closed for this release see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.5

Highlights

New features

	* Algorithms for generating and analyzing bipartite graphs
	* Maximal independent set algorithm
	* Erd?s-Gallai graphical degree sequence test
	* Negative edge cycle test
	* More memory efficient Dijkstra path length with cutoff parameter
	* Weighted clustering coefficient
	* Read and write version 1.2 of GEXF reader format
	* Neighbor degree correlation that handle subsets of nodes
	* In-place node relabeling
	* Many `weighted' graph algorithms now take optional parameter to use
	  specified edge attribute (default=`weight') (ticket 509)
	* Test for distance regular graphs
	* Fast directed Erd?s-Renyi graph generator
	* Fast expected degree graph generator
	* Navigable small world generator
	* Waxman model generator
	* Geographical threshold graph generator
	* Karate Club, Florentine Families, and Davis' Women's Club graphs

API Changes
See Version 1.5 notes and API changes
	http://networkx.lanl.gov/reference/api_1.5.html

Bug fixes
	* Fix edge handling for multigraphs in networkx/graphviz interface
	  (ticket 507)
	* Update networkx/pydot interface for new versions of pydot
	  (ticket 506), (ticket 535)
	* Fix negative cycle handling in Bellman-Ford (ticket 502)
	* Write more attributes with GraphML and GML formats (ticket 480)
	* Handle white space better in read_edgelist (ticket 513)
	* Better parsing of Pajek format files (ticket 524) (ticket 542)
	* Isolates functions work with directed graphs (ticket 526)
	* Faster conversion to numpy matrices (ticket 529)
	* Add graph[`name'] and use properties to access Graph.name (ticket 544)
	* Topological sort confused None and 0 (ticket 546)
	* GEXF writer mishandled weight=0 (ticket 550)
	* Speedup in SciPy version of PageRank (ticket 554)
	* Numpy PageRank node order incorrect + speedups (ticket 555)

Networkx-1.4

Release date: 23 January 2011

New features
	* k-shell,k-crust,k-corona
	* read GraphML files from yEd
	* read/write GEXF format files
	* find cycles in a directed graph
	* DFS and BFS algorithms
	* chordal graph functions
	* Prim's algorithm for minimum spanning tree
	* r-ary tree generator
	* rich club coefficient
	* NumPy matrix version of Floyd's algorithm for all-pairs shortest path
	* read GIS shapefiles
	* functions to get and set node and edge attributes
	* and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4

API Changes
	* gnp_random_graph() now takes a directed=True|False keyword instead of
	  create_using
	* gnm_random_graph() now takes a directed=True|False keyword instead of
	  create_using

Bug fixes
	* see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4

Networkx-1.3

Release date: 28 August 2010

See: https://networkx.lanl.gov/trac/timeline

New features
	* Works with Python versions 2.6, 2.7, 3.1, and 3.2 (but not 2.4 and 2.5).
	* Minimum cost flow algorithms
	* Bellman-Ford shortest paths
	* GraphML reader and writer
	* More exception/error types
	* Updated many tests to unittest style. Run with:
	  "import networkx; networkx.test()" (requires nose testing package)
	* and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3

API Changes
	* minimum_spanning_tree() now returns a NetworkX Graph (a tree or forest)

Bug fixes
	* see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3
2012-06-02 13:19:17 +00:00
wiz
990d0f63fd Add an option for psiconv support, and turn it off by default.
Fixes PR 46511 by Nouod de Brouwer (using his patch).
2012-06-02 07:11:09 +00:00
wiz
c71d178e6b Add an option for psiconv support, and turn it off by default.
Fixes PR 46511 by Nouod de Brouwer.

Set LICENSE while here.
2012-06-02 07:10:53 +00:00
wiz
98e0ec6a6c + py-munkres. 2012-05-30 11:05:49 +00:00
wiz
dfa4bc6b1f Initial import of py-munkres-1.0.5.4:
The Munkres module provides an implementation of the Munkres
algorithm (also called the Hungarian algorithm or the Kuhn-Munkres
algorithm), useful for solving the Assignment Problem.

Assignment Problem: Let C be an nxn matrix representing the costs
of each of n workers to perform any of n jobs. The assignment
problem is to assign jobs to workers in a way that minimizes the
total cost. Since each worker can perform only one job and each
job can be assigned to only one worker the assignments represent
an independent set of the matrix C.
2012-05-30 11:05:30 +00:00
cheusov
44858c9817 Remove GNU_PROGRAM_PREFIX variable (discussed in pkgsrc-users@).
All utilities are installed with a prefix 'g'. Symlinks with original
names are created in ${PREFIX}/gnu/bin.

Add LICENSE.

++pkgrevision
2012-05-29 18:33:34 +00:00
asau
881f14420d + arpack 2012-05-29 16:41:26 +00:00
asau
c0dee90348 Import ARPACK 96 as math/arpack.
Contributed to pkgsrc-wip by Jason Bacon.

ARPACK is a collection of Fortran77 subroutines designed to solve large
scale eigenvalue problems.

The package is designed to compute a few eigenvalues and corresponding
eigenvectors of a general n by n matrix A. It is most appropriate for large
sparse or structured matrices A where structured means that a matrix-vector
product w <- Av requires order n rather than the usual order n**2 floating
point operations. This software is based upon an algorithmic variant of the
Arnoldi process called the Implicitly Restarted Arnoldi Method (IRAM). When
the matrix A is symmetric it reduces to a variant of the Lanczos process
called the Implicitly Restarted Lanczos Method (IRLM). These variants may be
viewed as a synthesis of the Arnoldi/Lanczos process with the Implicitly
Shifted QR technique that is suitable for large scale problems. For many
standard problems, a matrix factorization is not required. Only the action
of the matrix on a vector is needed.  ARPACK software is capable of solving
large scale symmetric, nonsymmetric, and generalized eigenproblems from
significant application areas. The software is designed to compute a few (k)
eigenvalues with user specified features such as those of largest real part
or largest magnitude.  Storage requirements are on the order of n*k locations.
No auxiliary storage is required. A set of Schur basis vectors for the desired
k-dimensional eigen-space is computed which is numerically orthogonal to working
precision. Numerically accurate eigenvectors are available on request.

Important Features:

    o  Reverse Communication Interface.
    o  Single and Double Precision Real Arithmetic Versions for Symmetric,
       Non-symmetric, Standard or Generalized Problems.
    o  Single and Double Precision Complex Arithmetic Versions for Standard
       or Generalized Problems.
    o  Routines for Banded Matrices - Standard or Generalized Problems.
    o  Routines for The Singular Value Decomposition.
    o  Example driver routines that may be used as templates to implement
       numerous Shift-Invert strategies for all problem types, data types
       and precision.
2012-05-29 16:38:01 +00:00
wiz
95e216b064 Update to 2.0.17:
Thiss fixes a compilation issue with aligned_allocator, and a typo
in the ParametrizedLine documentation.
2.0.16:
Fix bug in 3x3 tridiagonlisation (and consequently in 3x3 selfadjoint eigen decomposition).
Fix compilation for new gcc 4.6.
Fix performance regression since 2.0.12: in some matrix-vector product, complex matrix expressions were not pre-evaluated.
Fix documentation of Least-Square.
New feature: support for part<SelfAdjoint>.
Fix bug in SparseLU::setOrderingMethod.
2012-05-29 14:51:42 +00:00
wiz
9455950fc8 Update to 3.3.2:
FFTW 3.3.2

* Removed an archaic stack-alignment hack that was failing with
  gcc-4.7/i386.

* Added stack-alignment hack necessary for gcc on Windows/i386.  We
  will regret this in ten years (see previous change).

* Fix incompatibility with Intel icc which pretends to be gcc
  but does not support quad precision.

* make libfftw{threads,mpi} depend upon libfftw when using libtool;
  this is consistent with most other libraries and simplifies the life
  of various distributors of GNU/Linux.

FFTW 3.3.1

* Changes since 3.3.1-beta1:

  - Reduced planning time in estimate mode for sizes with large
    prime factors.

  - Added AVX autodetection under Visual Studio.  Thanks Carsten
    Steger for submitting the necessary code.

  - Modern Fortran interface now uses a separate fftw3l.f03 interface
    file for the long double interface, which is not supported by
    some Fortran compilers.  Provided new fftw3q.f03 interface file
    to access the quadruple-precision FFTW routines with recent
    versions of gcc/gfortran.

* Added support for the NEON extensions to the ARM ISA.  (Note to beta
  users: an ARM cycle counter is not yet implemented; please contact
  fftw@fftw.org if you know how to do it right.)

* MPI code now compiles even if mpicc is a C++ compiler; thanks to
  Kyle Spyksma for the bug report.
2012-05-29 13:53:29 +00:00
wiz
55594b568e Update to 3.3.2:
FFTW 3.3.2

* Removed an archaic stack-alignment hack that was failing with
  gcc-4.7/i386.

* Added stack-alignment hack necessary for gcc on Windows/i386.  We
  will regret this in ten years (see previous change).

* Fix incompatibility with Intel icc which pretends to be gcc
  but does not support quad precision.

* make libfftw{threads,mpi} depend upon libfftw when using libtool;
  this is consistent with most other libraries and simplifies the life
  of various distributors of GNU/Linux.
2012-05-29 13:40:16 +00:00
asau
186c03f12b Update to Mathomatic 15.8.5
CHANGES MADE TO MATHOMATIC 15.8.4 TO BRING IT UP TO THE NEXT VERSION:

General cleanup.

05/11/12 - Renamed fact(x) function to factorial(x), because Maxima uses
           the function "factorial(x)" and no one uses "fact(x)".  Added
           factorial(x) as a standard function in rmath.  Removed binary
           operator name "mod" from rmath, due to having a different meaning
           in conventional mathematics.  It previously meant the % operator,
           which is a programming language construct and not math.

05/14/12 - Improved user interface of divide command.

05/16/12 - Improved introduction to Mathomatic in "doc/manual.html".

05/17/12 - Made more use of C function !isfinite(double) for better
           reliability.  Checks for infinity and NaN on user input.

05/18/12 - Solve verify now quick simplifies the solve result, so you
           don't have to.  This will result in better verification and
           less chance of oversized expressions.

05/20/12 - Fixed solving bug where it was throwing away absolute values.

           Improved the way Mathomatic looks.

05/21/12 - examples/limits.c is now a highly polished program, LGPL licensed.
           Compile with "./compile.limits".  Tells the integer and float
           C data types, with sizes, characteristics, and verification
           for the current C compiler (cc).

           Display total number of unique solutions stored with
           "simplify sign".

           Fixed several errors in the simplify command documentation in the
           Mathomatic Command Reference.

05/22/12 - Fixed simplify command to simplify (x^2 - 1)^4/(x + 1)^2 properly,
           by factoring repeated factor polynomials at the very end.

           Fixed bug in divide command, wasn't calculating the polynomial GCD
           sometimes, etc, because input was not being expanded.  Broken on
           12/14/11, fixed today.

05/23/12 - Fixed limit command to return the original expression when the
           limit variable is not found or the expression contains no
           variables.  A warning is given, telling that this is the case.
           Thanks to Parag Magunia for indicating that this was a bug.
           Previously these cases only returned with an error message.

           "tests/limits.in" limit command regression tests checked and
           re-added to the main tests.  All still works the same as when
           these limit command regression tests were removed long ago.

05/24/12 - Cleanup, and remove "examples/c", replaced with
           "examples/compile.limits" and "examples/compile.roots".

Mathomatic version 15.8.5 released Friday 05/25/12.

CHANGES MADE TO MATHOMATIC 15.8.3 TO BRING IT UP TO THE NEXT VERSION:

The version command now displays the last main prompt return value, and
the number of allocated equation spaces.

04/29/12 - Added simplifying trig identities to the tests.  Discovered
           "solve 0" doesn't work anymore, use "solve for 0" instead.
           "solve 0" will be fixed and enhanced shortly.

04/30/12 - "solve 0" and "solve verify 0" work now.  "solve verify 0"
           will solve for zero and tell you if the equation is an identity
           or not, while "solve 0" simply solves the current equation for
           zero.  "solve all verify 0" will verify that all entered equations
           are identities.

           With the roots command, the "Inverse check" value is not
           displayed unless debugging is enabled now.

           The iterative calculate command mode now always tells the
           number of completed feedback iterations.
           It was not apparent before.

           Documented and ignore pause command with demo mode now,
           instead of html mode.
           Demo mode is specified with -d, html mode with -x.

05/02/12 - Mathomatic now proudly displays when verifying a solve operation.
           Too many UI improvements to mention, all relatively minor.

05/03/12 - Added "copy select" option to the copy command, which selects
           the first created copy, making it the current equation, rather
           than not updating the current equation.

05/04/12 - Ran valgrind on the symbolic math library executable testmain,
           after running all the tests, no memory
           leaks were found at all!  I was surprised!  Now I get to pat
           myself on the back!  I will make another release soon.

05/05/12 - "display simple" is now allowed, in addition to "display mixed",
           to display simple or mixed fractions as desired, regardless of
           the default.

           "set finance" option removed, replace with "set fixed" option.
           Works similarly, except now you can do "set fixed_point=0" to have
           integer-only output.
           "set no fixed" or "set fixed -1" turns off fixed-point
           mode, returning you to true floating-point mode.

05/06/12 - Added more integer factoring debugging code.  It's a shame that
           Mathomatic only does double precision floating point arithmetic.

           Made "set no autodelete" the default.  Numeric expressions will
           not be deleted.  "set auto" leaves "autodelete" alone now.

05/07/12 - real and imaginary commands now append "_real" or "_imag" to the
           solved for variable name now, if a solved equation.  This is for
           clarification and ease of use.

05/08/12 - Improved "misc/limits.c" and added GNU LGPL license preamble.
           Later moved to directory examples.

           -d demo mode now allows using the calculate command without
           prompting for the values of any of the variables.  This is so the
           calculate command can be used with the online versions of
           Mathomatic.

05/09/12 - Moved all worthy example source code from directory misc to
           directory examples, so they can be included in the binary
           distributions.  Moved and now available are limits.c, roots.c,
           and testprimes.

           Improved/shortened the eliminate command messages and made the
           "using" syntax consistent.

           Need "set debug -2" to suppress everything now, including warnings.
           "set debug -1" only suppresses helpful messages now, warnings will
           get through.  Warnings are usually rather important.

Mathomatic version 15.8.4 released Thursday 05/10/12.

CHANGES MADE TO MATHOMATIC 15.8.2 TO BRING IT UP TO THE NEXT VERSION:

Code cleanup.

03/27/12 - Added simplification of "tests/trig.in" and "tests/hypertrig.in"
           to the regression tests.

04/02/12 - Added ability to create all non-re-entrant code, so that the Apple
           app store won't complain.  The line containing "_REENTRANT" in
           "includes.h" has been commented out, so nothing special needs to be
           done, when compiling for iOS.

04/07/12 - Added ability to make help command text paragraphs all one long
           line, instead of always expecting an 80 column or higher display.
           Useful for 40 column displays for example, as long as the display
           wraps at 40 columns, the output should look OK.  Better than it
           did, anyways.  Tables and such are preserved.  See the beginning
           of "help.c".

04/10/12 - Fixed bug failing to run gnuplot with Mathomatic compiled with
           MINGW. This only affects the MS-Windows version.  So if you have
           downloaded gnuplot under MS-Windows, the plot command should work
           the same as in all other operating systems, now.  Be sure and name
           it gnuplot.exe and have it in an executable directory in your PATH.
           This fixed bug is thanks to Tom Sturgeon for bringing this
           error to my attention.  This gnuplot fix will be included in the
           next release, version 15.8.3, and is now in the development
           version.  The problem was caused by differences between the Unix
           echo command and the Windows echo command.

04/12/12 - Comparing expressions with the compare command will now tell if
           one expression is the negation (times -1) of the other.

04/22/12 - Added the HTML tidy command after rman, so that the HTML errors
           created by rman are all fixed.

           Added and documented matho_clear(3) to Symbolic Math Library,
           replaces clear_all().  Simply rename all occurrences of
           clear_all() in your code that uses the library with
           matho_clear().

04/23/12 - Improved debugging code and error messages.

04/25/12 - The previous autocalc result is erased every time autocalc is
           used, unless "set no autodelete" was done.  This is done in case
           you would like to keep every calculation you made stored in an
           equation space.  The default is the previous behavior:
           "set autodelete", which only keeps one numerical calculation
           in memory.  "autodelete" only means something when "autocalc" is
           on, and since the library has no calculate command, this is not
           available in the symbolic math library.

04/27/12 - Cleanup of equation space selecting, shelling out with !, etc.
           In the Mathomatic application, everything is now flushed before
           user input (with fflush(NULL)).  fflush(NULL) is not used at all
           anymore in the symbolic math library.

Mathomatic version 15.8.3 released Saturday 04/28/12.

CHANGES MADE TO MATHOMATIC 15.8.1 TO BRING IT UP TO THE NEXT VERSION:

Change of 12/18/11 partially undone.  Preventing power collecting
of absolute values doesn't seem necessary anymore, some other
change done recently must have fixed it.
Now power collecting is always done when requested,
fixing a substantial simplification regression that began on 12/18/11.

03/13/12 - Small fix to main makefile.  "mandir" and "docdir" no longer depend
           on "datadir".

03/14/12 - Small fix to simplification.  Any absolute value (such as
           |x*y| = ((x*y)^2)^.5) is now not ever power expanded
           (to (x^2)^.5*(y^2)^.5 or (x*x*y*y)^.5), so some results are
           simpler, like simplifying |x^2-x|.

03/23/12 - A change to the matho script makes GNU m4 no longer quiet
           about any warnings or errors, when running m4 Mathomatic.

Mathomatic version 15.8.2 released Saturday 03/24/12.
2012-05-29 13:23:49 +00:00
marino
e97c419033 math/R-wle: Add gettext-lib buildlink3 2012-05-26 14:38:38 +00:00
marino
81eae99561 math/R-circular: Add gettext-lib buildlink3
Yes, it's needed.  During installation on DragonFly:
distance.c: error libintl.h: No such file or directory.
2012-05-21 14:57:31 +00:00
reed
7afd4f1544 To build it needs at least libgsf 1.14.18
Package revision not bumped since no package with older version possible.0
2012-05-15 03:45:22 +00:00
dholland
f4ad6218eb Build fix for new glib2. 2012-05-10 07:50:11 +00:00
obache
1dd70837f4 === 0.7.1 / 08.05.2012
* Author: Artem Ignatiev <zazubrik@gmail.com>
* remove require and rake altogether
* gem build and rake gem both work fine without those requires,
* and requiring 'rake' broke bundler
* add rake as development dependency
* Somehow it broken rake on my other project

=== 0.7.0 / 07.05.2012

* Author: Artem Ignatiev <zazubrik@gmail.com>
* use both ruby 1.8 and 1.9 compatible way of getting character code when hashing
* Fix syntax for ruby-1.9
* return gemspec so that bundler can find it
  When bundler loads gemspec, it evaluates it, and if the return value is
  not a gem specification built, refuses to load the gem.
* Testing worksheet protection
2012-05-08 09:37:51 +00:00
dholland
6d31fbdd1d Fix fpos_t configure test, allowing this to build on netbsd-6.
PR 46412.

XXX: I'm not convinced the results will actually *work*. If anyone
XXX: knows how to check this, please do.
2012-05-07 19:57:17 +00:00
dholland
7e751949e4 Set BUILDLINK_ABI_DEPENDS correctly (with +=, not ?=)
It turns out there were a lot of these.
2012-05-07 01:53:12 +00:00
hans
43cace2e39 Add checksums for recently added patches. 2012-05-06 12:34:43 +00:00
hans
46ef41886f Fix build with gcc4.5 and newer. Patch taken from Gentoo, see
https://bugs.gentoo.org/show_bug.cgi?id=321209
2012-05-06 11:07:24 +00:00
hans
4b7dfc03f1 Use the .tar.bz2 distfile to avoid the xzcat dependency and issues when
building this inside of gcc.
2012-05-03 11:55:36 +00:00
wiz
1bf4de4f72 + p5-Math-Permute-List. 2012-05-03 09:07:52 +00:00
wiz
780c51df66 Initial import of p5-Math-Permute-List-1.004:
Generate and process all the all the permutations of a list using
the standard Perl metaphor.
2012-05-03 09:07:30 +00:00
obache
38dd49f12a Update ruby-spreadsheet to 0.6.9.
=== 0.6.9 / 28.04.2012

* Yield is more simple here too.
* No need to capture the block in Spreadsheet.open
* Rather than extending a core class, let's just use #rcompact from a helper module
2012-04-28 12:17:13 +00:00
hans
99e98e7c66 Always add -shared to LDFLAGS to work around some stupidity. Should fix
pkg/44107, tested on SunOS and NetBSD. More can be found information here:
http://projects.scipy.org/numpy/ticket/1101
2012-04-25 16:36:39 +00:00
wiz
8952e8a1c7 Update to 3.1.0:
Changes from versions 3.0.* to version 3.1.0:
- The "canard à l'orange" release.
- The MPFR source has been reorganized.
- Dropped ansi2knr support.
- TLS support is now detected automatically. If TLS is supported, MPFR is
  built as thread safe by default. To disable TLS explicitly, configure
  MPFR with --disable-thread-safe.
- New --enable-gmp-internals configure option to use GMP's undocumented
  functions (not from the public API). Note that library versioning is
  not guaranteed to work if this option is used.
- The mpfr_urandom and mpfr_urandomb functions now return identical values
  on processors with different word size (assuming the same random seed, and
  since the GMP random generator does not depend itself on the word size,
  cf http://gmplib.org/list-archives/gmp-devel/2010-September/001642.html).
- The mpfr_add_one_ulp and mpfr_sub_one_ulp macros (which are obsolete and
  no more documented) will be removed in a future release.
- Speed improvement for the mpfr_sqr and mpfr_div functions using Mulders'
  algorithm. As a consequence, other functions using those routines are
  also faster.
- Much faster formatted output (mpfr_printf, etc.) with %Rg and similar.
- The --with-gmp-build configure option can now be used when the GMP
  source directory and the GMP build directory are different (without
  having to copy header files manually as before).
- New functions mpfr_buildopt_gmpinternals_p, mpfr_buildopt_tune_case,
  mpfr_frexp, mpfr_grandom and mpfr_z_sub.
- New divide-by-zero exception (flag) and associated functions.
- The mpfr.h header can be included several times, while still supporting
  optional functions (see Section "Headers and Libraries" in the manual).
- Updated tuning parameters.
- Improved MPFR manual.
- MPFR tests: libtool no longer generates wrapper scripts with "make check"
  (so that running the tests under valgrind or gdb is easier).
- Bug fixes.
  Note: The mpfr_subnormalize implementation up to MPFR 3.0.0 did not change
  the flags. In particular, it did not follow the generic rule concerning
  the inexact flag (and no special behavior was specified). The case of the
  underflow flag was more a lack of specification.

NetBSD-6.99.4/amd64:
All 160 tests passed
(1 test was not run)
2012-04-22 15:13:26 +00:00
drochner
05b3b2ed34 update to 1.6.1
changes: any new features, performance improvements and bug fixes,
Some highlights are:
-Re-introduction of datetime dtype support to deal with dates in arrays.
-A new 16-bit floating point type.
-A new iterator, which improves performance of many functions.
2012-04-17 17:24:41 +00:00
brook
8abba70ad4 Fix checksums for patches. 2012-04-16 00:43:40 +00:00
brook
3f01294ef0 Update to XML v3.9-4 and regularize package files. 2012-04-15 22:33:33 +00:00
brook
bbaca81739 Added R-geoRglm. 2012-04-15 22:16:24 +00:00
brook
497b903171 Import of geoRglm v0.9-2.
Functions for inference in generalised linear spatial models.  The
posterior and predictive inference is based on Markov chain Monte
Carlo methods.  Package geoRglm is an extension to the package geoR,
which must be installed first.
2012-04-15 22:14:29 +00:00
wiz
6dc4abe4b7 Reset maintainer, developer has left the building 2012-04-15 22:00:58 +00:00
brook
8723825b27 Update to reflect license restrictions on commercial redistribution. 2012-04-15 21:58:24 +00:00
brook
016a3e2db5 Added R-DBI and R-RPostgreSQL. 2012-04-15 18:00:28 +00:00
brook
39d0d618c7 Import RPostgreSQL v0.3-2.
Database interface and PostgreSQL driver for R.  This package provides
a Database Interface (DBI) compliant driver for R to access PostgreSQL
database systems.  A wiki and issue tracking system for the package
are available at Google Code at https://code.google.com/p/rpostgresql/.
2012-04-15 17:57:36 +00:00
brook
f774cf763b Import R DBI v0.2-5.
A database interface (DBI) definition for communication between R and
relational database management systems.  All classes in this package
are virtual and need to be extended by the various R/DBMS
implementations.
2012-04-15 17:54:23 +00:00
brook
2123440c17 Update to gstat v1.0-10, add LICENSE, and regularize package files. 2012-04-15 17:37:43 +00:00
brook
37210a6596 Added R-spacetime. 2012-04-15 17:33:52 +00:00
brook
993731bee6 Import R-spacetime v0.6-2.
A package with classes and methods for spatio-temporal data.  In
particular, space-time regular lattices, sparse lattices, and
irregular data are supported, with limited support for trajectories,
but not for topologies with S/T interactions such as space-time
prisms.  Utility functions are provided for plotting data as map
sequences (lattice or animation) or multiple time series; for spatial
and temporal selection, as well as methods for retrieving coordinates,
for subsetting, print, summary, etc.
2012-04-15 17:33:04 +00:00
brook
93ddc95ad5 Add R-xts. 2012-04-15 17:14:34 +00:00
brook
045d7b633d Import R-xts v0.8-6.
Provide for uniform handling of R's different time-based data classes
by extending zoo, maximizing native format information preservation
and allowing for user level customization and extension, while
simplifying cross-class interoperability.
2012-04-15 17:13:47 +00:00
brook
e015b626fa Add R-zoo. 2012-04-15 17:11:33 +00:00
brook
a2c6e9de7d Import R-zoo v1.7-7.
An S3 class with methods for totally ordered indexed observations.  It
is particularly aimed at irregular time series of numeric
vectors/matrices and factors.  Zoo's key design goals are independence
of a particular index/date/time class and consistency with ts and base
R by providing methods to extend standard generics.
2012-04-15 17:10:18 +00:00
brook
cbcc1ee6aa Update to RArcInfo v0.4-12, added LICENSE and regularized package files. 2012-04-15 16:57:19 +00:00
brook
14c039f8fd Updated to genetics v1.3.6, added LICENSE (commented) and updated MAINTAINER. 2012-04-15 16:54:17 +00:00
brook
f63b0c3ae0 Add R-RColorBrewer. 2012-04-15 16:49:03 +00:00
brook
f305d28118 Import of RColorBrewer v1.0-5.
The packages provides palettes for drawing nice maps shaded according
to a variable.
2012-04-15 16:43:47 +00:00
brook
1a444bbfbc Update to mapproj v1.1-8.3, add LICENSE and update MAINTAINER. 2012-04-15 16:35:01 +00:00
brook
5f0610a791 Update to clim.pact v2.3-10, add LICENSE and regularize package files. 2012-04-15 16:15:31 +00:00
brook
64dd8d2575 Update to gdata v2.8.2, add LICENSE and regularize package files. 2012-04-15 16:12:28 +00:00
brook
e3d6292054 Update to wle v0.9-4, add LICENSE and regularize package files. 2012-04-15 16:03:42 +00:00
brook
9cb088af85 Update to classInt v0.1-17, add LICENSE and regularize package files. 2012-04-15 16:00:01 +00:00
brook
116168d9ed Update to Rcmdr v1.8-4, add LICENSE and update MAINTAINER. 2012-04-15 15:49:00 +00:00
brook
fb39c82789 Update to statmod v1.4.14, add LICENSE and regularize package files. 2012-04-15 15:45:16 +00:00
brook
074d7d120c Update to sgeostat v1.0-24, add LICENSE and regularize package files. 2012-04-15 15:43:26 +00:00
brook
87a8a45bfa Update to ncdf v1.6.6, add LICENSE and regularize package files. 2012-04-15 15:39:34 +00:00
brook
1eadef621b Update to pixmap v0.4-11, add LICENSE and update MAINTAINER. 2012-04-15 15:38:14 +00:00
brook
f42178e567 Update to mvtnorm v0.9-9992, add LICENSE and regularize package files. 2012-04-15 15:33:38 +00:00
brook
9a2bdb1a89 Update to maps v2.2-5, add LICENSE and update MAINTAINER. 2012-04-15 15:30:55 +00:00
brook
3d9a11252d Update to hwde v0.62, add LICENSE and regularize package files. 2012-04-15 15:28:51 +00:00
brook
cb6dc74f89 Update to gtools v2.6.2, add LICENSE and regularize package files. 2012-04-15 15:26:35 +00:00
brook
308a844a44 Update to e1071 v1.6, add LICENSE and regularize package files. 2012-04-15 15:25:09 +00:00
brook
4c3f34f3bd Update to date v1.2-32, add LICENSE and update MAINTAINER. 2012-04-15 15:22:37 +00:00
brook
9c22f9903b Update to circular v0.4-3, add LICENSE and regularize package files. 2012-04-15 15:20:52 +00:00
brook
0be8666465 Update to chron v2.3-42, add LICENSE and update MAINTAINER. 2012-04-15 15:18:34 +00:00
brook
84d4ce14e6 Update to car v2.0-12 and add LICENSE. 2012-04-15 15:15:48 +00:00
brook
f516bbef95 Update to akima v0.5-7, add LICENSE and regularize package files. 2012-04-15 15:09:26 +00:00
brook
5175ccc63e Update to abind v1.4-0, add LICENSE and regularize package files. 2012-04-15 14:55:50 +00:00
brook
aba2a8b73e Update to R2HTML v2.2, add LICENSE and regularize package files. 2012-04-15 14:51:05 +00:00
brook
3d9588e25b Update to PHYLOGR v1.0.7, add LICENSE and regularize package files. 2012-04-15 14:48:26 +00:00
brook
8c6b8365b6 Update to ISwR v2.0-6, add LICENSE and regularize package files. 2012-04-15 14:45:35 +00:00
brook
c43c0da7ea Update to lmm v0.5 and regularize the package files. 2012-04-15 13:46:13 +00:00
brook
c0220c0bf7 Update to DAAG v1.12 and regularize the package files. 2012-04-15 13:33:06 +00:00
brook
20fdd5be59 Update to randomForest v4.6-6. Add a LICENSE. 2012-04-15 13:28:39 +00:00
brook
ce6a036acf Add a LICENSE and regularize the package files. 2012-04-15 13:16:35 +00:00
brook
c096f19eff Add a LICENSE and regularize the Makefile format. 2012-04-15 13:13:17 +00:00
brook
6c02d7a74f Update MAINTAINER and add LICENSE. 2012-04-15 13:09:40 +00:00
markd
cbc4db0822 Update KDE SC to 4.8.2
bugfixes.
2012-04-15 05:54:50 +00:00
markd
4123ace1b0 Update to 2.14.2
CHANGES IN R VERSION 2.14.2:

  NEW FEATURES:

    o The internal untar() (as used by default by R CMD INSTALL) now
      knows about some pax headers which bsdtar (e.g., the default tar
      for Mac OS >= 10.6) can incorrectly include in tar files, and
      will skip them with a warning.

    o Function compactPDF() in package tools now takes the default for
      argument gs_quality from environment variable GS_QUALITY: there
      is a new value "none", the ultimate default, which prevents
      GhostScript being used in preference to qpdf just because
      environment variable R_GSCMD is set.  If R_GSCMD is unset or set
      to "", the function will try to find a suitable GhostScript
      executable.

    o For consistency with the logLik() method, nobs() for "nls" files
      now excludes observations with zero weight.  (Reported by Berwin
       Turlach.)

  UTILITIES:

    o R CMD check now reports by default on licenses not according to
      the description in 'Writing R Extensions'.

    o R CMD check has a new option --as-cran to turn on most of the
      customizations that CRAN uses for its incoming checks.

  PACKAGE INSTALLATION:

    o R CMD INSTALL will now no longer install certain file types from
      inst/doc: these are almost certainly mistakes and for some
      packages are wasting a lot of space.

  + BUG FIXES

CHANGES IN R VERSION 2.14.1:

  NEW FEATURES:

    o parallel::detectCores() is now able to find the number of
      physical cores (rather than CPUs) on Sparc Solaris.

      It can also do so on most versions of Windows; however the
      default remains detectCores(logical = TRUE) on that platform.

    o Reference classes now keep a record of which fields are locked.
      $lock() with no arguments returns the names of the locked fields.

    o HoltWinters() reports a warning rather than an error for some
      optimization failures (where the answer might be a reasonable
      one).

    o tools::dependsOnPkg() now accepts the shorthand dependencies =
      "all".

    o parallel::clusterExport() now allows specification of an
      environment from which to export.

    o The quartz() device now does tilde expansion on its file
      argument.

    o Option print in Sweave's RweaveLatex() driver now emulates
      auto-printing rather than printing (which can differ for an S4
      object by calling show() rather than print()).

    o filled.contour() now accepts infinite values: previously it might
      have generated invalid graphics files (e.g. containing NaN
      values).

  + BUG FIXES
2012-04-15 03:29:47 +00:00
drochner
dc799c2ab9 update to 1.0.15
changes:
Minor fixes, enhancements, and nots of translation updates.
2012-04-14 13:28:23 +00:00
hans
590cbada61 Add inplace.mk to allow building this inside another package. 2012-04-13 11:00:14 +00:00
wiz
12418518e7 Fix a sed statement to install an additional file. Bump PKGREVISION.
From Kai-Uwe Eckhardt in private mail.
2012-04-11 21:22:00 +00:00
wiz
3ce43c7788 Fix paths after import. 2012-04-08 20:58:05 +00:00
wiz
fcfb004ee9 + ppl. 2012-04-08 20:53:36 +00:00
wiz
af3199d38b Initial import of ppl-0.11.2, packaged by Kai-Uwe Eckhardt for wip.
The Parma Polyhedra Library. Used by gcc for loop optimization.
2012-04-08 20:52:32 +00:00
wiz
05700fba37 + cloog. 2012-04-08 20:48:29 +00:00
wiz
755aad1d2e Initial import of cloog-0.16.2 from pkgsrc-wip, created by Kai-Uwe
Eckhardt.

CLooG is a code generator for scanning Z-polyhedra and is used by
gcc >= 4.4 for loop optimization.
2012-04-08 20:47:52 +00:00
wiz
c595076396 All supported python versions in pkgsrc support eggs, so remove
${PLIST.eggfile} from PLISTs and support code from lang/python.
2012-04-08 20:21:41 +00:00
wiz
aada88e659 Remove python24 and all traces of it from pkgsrc.
Remove devel/py-ctypes (only needed by and supporting python24).
Remove PYTHON_VERSIONS_ACCEPTED and PYTHON_VERSIONS_INCOMPATIBLE
lines that just mirror defaults now.
Miscellaneous cleanup while editing all these files.
2012-04-08 19:08:44 +00:00
asau
7b7ad7ec2e Update to Maxima 5.27.0
Changes in Maxima 5.27:

   Backwards-incompatible changes:

 * remove obsolete Cray Fortran translator
 * rename topoly and to_poly_solver to to_poly and to_poly_solve, respectively


   New items in core:

 * new functions zn_order, zn_primroot_p, zn_primroot, zn_log, chinese


   New items in share:

 * package rkf45: Runge-Kutta-Fehlberg 4th-5th order numerical o.d.e. solver


   Other changes:

 * functions bessel_i, bessel_j: results for imaginary arguments
 * function build_info: return a structure instead of just printing its data
 * function plot3d: allow 3-d parametric plots
 * functions fortmx, f90mx: generate assignments to 1-d array when argument is a list
 * package ezunits: update values for physical constants
 * revise and update documentation
 * reorganization of directory maxima/share
 * clean up source code by cutting out unused functions


   Bug fixes:

 3509430: limit of tanh(x) at 0 makes no sense
 3497046: Integration of products of sin(nz)/(nz) sometimes fails
 3495182: hgfred([-n/2, (n-1)/2],[1],x) --> error
 3484414: display places (false) before output if display2d is false
 3480954: integrate(sin(x)^2/x,x,minf,inf) gives not zero
 3473549: gcl bug using 1-12-2012 defint.lisp
 3470668: Integration is not correct: invalid 'false' term in results
 3469184: integrate(exp(-x^n),x,0,1) bug for n >2
 3449369: nfloat
 3397562: sin(x^2)/(x^2) improper integral incorrect?
 mailing list 2012-02-27: print ( false ) bug 5.26.0
 mailing list circa 2012-02-19: BIGFLOAT::%TO should pass CL complex numbers
 mailing list circa 2012-01-27: nonstandard extension in category scripts
 mailing list circa 2012-01-09: invert_by_lu does not work as expected
 overflow in regularized incomplete gamma function
 incorrect value for gamma_incomplete(0,200*%i)
2012-04-08 12:09:42 +00:00
reinoud
67ab306fb4 Add dependency on qt4-tools to counter installation problems 2012-04-02 09:57:17 +00:00
asau
1c65229d0d Ad hoc fix to make OpenAxiom build with CLISP on NetBSD/amd64.
It sounds like COMPILE-FILE is broken in CLISP on NetBSD/amd64.
Silence warnings and suppress redefinition check in order to compile it
without a single warning.
2012-04-01 20:48:39 +00:00
brook
a846192d9e Update to version 1.7-2 of the R geoR package. Cleanup of DESCR and
Makefile.

Geostatistical analysis including traditional, likelihood-based and
Bayesian methods.
2012-04-01 18:09:54 +00:00
brook
fe594d6f56 Update to version 0.9-98 of the R sp package. Cleanup of DESCR and
Makefile.

A package that provides classes and methods for spatial data. The
classes document where the spatial location information resides, for
2D or 3D data. Utility functions are provided, e.g. for plotting data
as maps, spatial selection, as well as methods for retrieving
coordinates, for subsetting, print, summary, etc.
2012-04-01 18:05:34 +00:00
brook
069908e071 Added new package R-splancs. 2012-04-01 18:00:02 +00:00
brook
db3a03ab87 Initial import of the R-splancs package.
splancs: Spatial and Space-Time Point Pattern Analysis
2012-04-01 17:57:21 +00:00
brook
14fe16a416 Added the new package R-RandomFields. 2012-04-01 17:52:14 +00:00
brook
638879a8ae Initial import of package.
RandomFields: Simulation and Analysis of Random Fields

Simulation of Gaussian and extreme value random fields; conditional
simulation; kriging.
2012-04-01 17:46:27 +00:00
christos
6289cdd551 Fix the bloody fpos_t/off_t mess. 2012-03-23 22:32:59 +00:00
asau
f8d9d9fa63 Add forgotten patches. 2012-03-23 21:21:36 +00:00
asau
1b075e0f04 Update to OpenAxiom 1.4.1
Changes in OpenAxiom-1.4.1

Algebra

The domain ScriptFormulaFormat and the package ScriptFormulaFormat1 have been removed.


Changes in OpenAxiom-1.4.0

This release introduces the following changes from the base document
("AXIOM: The Scientific Computation System" by Jenks and Sutor).

Compiler

  * The compiler now accepts interpreter-style unnamed functions.
  * The compiler now generate far better (Lisp) codes for Spad libraries
    or scripts. The compiler now applies more aggressive (but sound)
    optimizations, including domain inlining, type propagations.
  * The compiler now accepts interpreter-style unnamed functions.
  * Parameterized macros are now supported by the compiler.
  * The compiler now support exception handling. In particular,
    the try/finally programming construct was added to support reliable
    resource management (e.g. opening/closing or creating/removing files.)

Algebra

In addition to novelties in OpenAxiom-1.3.0, the following types have been
added to OpenAxiom-1.4.0:

  * The category BooleanLogic has been added.
    It is now extended by PropositionalLogic and BitAggregate.
    The domain SingleInteger now satisfies BooleanLogic.
  * It it now possible to obtain the string representation of a
    DoubleFloat value. The function

       string: DoubleFloat -> %

    was added to the domain String
  * A function matrix is now exported by the category MatrixCategory
    to allow construction of matrices whose entries can be succinctely
    described by a function. For instance, the 4-by-4 Hilbert matrix
    may be expressed as

       m: Matrix Fraction Integer := matrix(4,4,(i,j) +-> 1/(i+j))

    Note that the third argument is a function that computes the value
    of the (i,j)th entry.
  * The category StringCategory was removed as it was essentially redundant
    with the category StringAggregate.
  * The category MappingCategory is now part of the algebra as a builtin
    category constructor.
  * The following operators

       less?: (%,NonNegativeInteger) -> Boolean
       more?: (%,NonNegativeInteger) -> Boolean
       size?: (%,NonNegativeInteger) -> Boolean

    have been moved from the category Aggregate to StreamAggregate
    where they seem more appropriate.
  * The domain InnerTaylorSeries now satisfies the category BiModule.
  * The domains FreeModule and OrderedFreeMonoid now satisfy the newly
    added FreeMonoidCategory.
  * The list of domains for OpenAxiom program manipulation has been expanded.
  * Support for range and segment bindings now includes RangeBinding.

Boot

Boot, the programming language used to write the OpenAxiom compiler,
has been vastly improved. Lisp codes are being phased out.
2012-03-23 21:20:46 +00:00
taca
6967adfe5f Update -pear-Numbers_Words to 0.16.4.
0.16.4

Release date: 2012-03-21 02:13 UTC
Release state: beta

Changelog:

* Currency names for Dutch
* Re-licensed to PHP 3.01 [ifeghali]

0.16.3

Release date: 2011-12-10 15:37 UTC
Release state: beta

Changelog:

QA Release
* Bug #12512 Windows incorrect declaration of toWords() in lang.fr.php
  (and others!) ifeghali
* Bug #17373 bug in toWords function for hungarian translation kouber
* Bug #17392 bugs in toWords function for hungarian translation ifeghali
* Bug #17754 Patch: Using explode instead of split ifeghalbi
* Request #17763 Independent tr_TR Lang support ifeghali
* Bug #17794 Patch: avoiding split in es_MX file ifeghali
* Bug #18501 incorrect declaration of toWords() in lang.fr.php kouber
* Bug #19013 remove error_reporting (for PEAR QA team) ifeghali
2012-03-22 14:23:40 +00:00
markd
67e3159cc7 add analitza, cantor, kalgebra 2012-03-20 07:32:13 +00:00
markd
983fcf3b1a add analitza, cantor, kalgebra. Part of KDE SC 4.8.0 2012-03-20 07:30:13 +00:00
markd
fbc56db4ba add kcalc 2012-03-20 05:26:59 +00:00
markd
0aa0f62c9a Import kcalc. Part of KDE SC 4.8.0
KDE scientific calculator
2012-03-20 05:25:38 +00:00
asau
63fe82344e Update to Mathomatic 15.8.1
CHANGES MADE TO MATHOMATIC 15.8.0 TO BRING IT UP TO THE NEXT VERSION:

Added some important missing documentation, and the makefiles were fixed.
Some scary messages explained to make them less scary.

02/23/12 - All makefiles corrected to fix the following problem:
           Removed -Cv option from the install command, so that installing
           Mathomatic under NetBSD works without a hitch.  The "install -Cv"
           option is not supported under some operating systems, so compiling
           and installing Mathomatic will now be easier on those systems.

02/27/12 - Added Heron's formula (calculates the area of any triangle, given
           all three side lengths) to the "help geometry" command.  Mathomatic
           can solve for any side length, too.  See "tests/heron.in" for some
           proofs.

03/01/12 - "make uninstall" is now passing the current "prefix" (the directory
           being operated on, like "/usr") to the lib and primes uninstall.

03/04/12 - Added noisy compile-time warning if DBL_DIG is not 15, and display
           it as digits precision in the version command.

           Removed "no right_associative_power" from set options listing, now
           only lists "right_associative_power" if it is set.  A very
           unimportant and rarely used option that was just taking up display
           space.  However, when set, this option makes Mathomatic work like
           most other computer algebra systems when parsing multiple power
           operators on the same level (without parentheses).  So feel free
           to use it, or recommend I make it the default.

03/06/12 - Fixed a bug in modulus simplification; sometimes it would go in an
           infinite loop because it was not checking that it made the
           expression smaller.  It now checks that the result is actually
           smaller.  Surprisingly, this problem happened only when doing
           polynomial division for a modulus operator to simplify it.
           Here is a test expression, to see if you have this bug:
           (x % ((x - y)/integer_any1)).  Simplifying it results in a hang,
           on any version of Mathomatic without the new bug fix.

Mathomatic version 15.8.1 released Friday 03/09/12.
2012-03-18 17:34:16 +00:00
wiz
8a0d28c6b0 Set LICENSE. Quell a pkglint warning. 2012-03-16 00:20:51 +00:00
wiz
8b5589a2ea Bump PKGREVISION for python default version change to 2.7.
py-* not affected, since it built different versions depending on the
setting already.
2012-03-09 12:33:57 +00:00
wiz
b3bdb92a5c Fix build with pcre-8.30+.
Based on patch by Petr Pisar <ppisar@redhat.com>
2012-03-06 21:34:29 +00:00
wiz
e0808f0de0 More pcre PKGREVISION bumps. 2012-03-03 12:54:15 +00:00
adam
45014ac7de Changes 3.3.1:
* Reduced planning time in estimate mode for sizes with large prime factors.
* Added AVX autodetection under Visual Studio.
* Modern Fortran interface now uses a separate fftw3l.f03 interface file for
  the long double interface, which is not supported by some Fortran compilers.
  Provided new fftw3q.f03 interface file to access the quadruple-precision FFTW
  routines with recent versions of gcc/gfortran.
* Added support for the NEON extensions to the ARM ISA.
* MPI code now compiles even if mpicc is a C++ compiler.
2012-03-03 11:45:07 +00:00
wiz
ee311e3b36 Recursive bump for pcre-8.30* (shlib major change) 2012-03-03 00:11:51 +00:00
obache
4104390b47 Honor CFLAGS/CXXFLAGS and avoid to override the optimizer levels. 2012-03-01 05:01:15 +00:00
obache
e9c01272db Add comment. 2012-03-01 04:49:51 +00:00
hans
718bbf4bcf Recursive bump from devel/boost-libs update. 2012-02-29 16:32:19 +00:00
reinoud
0d0921bf45 Add cgal, Computational Geometry Algorithms Library to the math Makefile 2012-02-27 12:47:26 +00:00
reinoud
a4e029d82d Import math/cgal version 3.9, Computational Geometry Algorithms Library 2012-02-27 12:46:27 +00:00
drochner
b5f18649ed update to 0.7.1
This is a major update, many additions and improvements.
Dropped Python-2.4 support.
2012-02-24 19:43:03 +00:00
drochner
91d6c92bd2 update to 0.17
changes:
-various additions and improvements
-bugfixes
-dropped Puthon-2.4 support
2012-02-24 19:40:53 +00:00
adam
f30d19cb53 Changes 1.37:
* Updated test files from the Math::BigInt distribution
* Updated bundled Devel::CheckLib from v0.92 to v0.93
* Math::BigInt::GMP now requires Math::BigInt v1.997
* Include "^MYMETA\.(yml|json)\z" in MANIFEST.SKIP. Whereas META.* are
  generated by the distribution author at packaging time, MYMETA.* are
  generated by the end user at configure time after any dynamic dependencies
  are known.
* Changed Makefile.PL so that a "make dist" makes a META.yml and META.json.
* Updated common test files from the Math::BigInt distribution.
2012-02-24 16:29:43 +00:00
asau
41d34a116c Update to FriCAS 1.1.6
Notable changes in FriCAS 1.1.6 (compared to version 1.1.5):

- Added experimental graph theory package.

- Added power series expanders for Weierstrass elliptic
  functions at 0.

- New functions: kroneckerProduct and kroneckerSum for matrices,
  numeric weierstrassInvariants and modularInvariantJ, symbolic
  Jacobi Zeta, double float numeric elliptic integrals.

- New domains for vectors and matrices of unsigned 8 and 16 bit integers.

- Changes to Spad compiler: underscores which are not needed as escape
  are now significant in Spad names and strings, macros with parameters
  are supported, added partial support for exceptions, braces can
  be used for grouping.

- A few speedups.

- Reduced disc space usage during build.

Bug fixes, in particular:

- Fixed eval of hypergeometricF at 0

- Fixed problem with scope of macros.

- Worked around problems with openinig named pipes in several Lisp
  implementations.

- Fixed a problem with searching documentation via HyperDoc.

- Fixed build problem on Mac OSX.


Notable changes in FriCAS 1.1.5 (compared to version 1.1.4):

- Added numeric version of lambertW.

- New function 'rootFactor' which tries to write roots of products
  as products of roots.

- 'try', 'catch' and 'finally' are now Spad keywords.

- Experimental support for using gmp with Closure CL (64-bit Intel/Amd
  only).

- New categoris CoercibleFrom and ConvertibleFrom.  New domain
  for ordinals up to epsilon0.  New domain for matrices of machine
  integers.  New package for solving linear equations written as
  expressions (faster then general expression solver).

- Functions exported by Product() are now called 'construct', 'first'
  and 'second' (instead of 'makeprod', 'selectfirst' and 'selectsecond'
  respectively).

- Some functions are now much faster, in particular bivariate
  factorization over small finite fields.

- When using sbcl FriCAS now tries to preload statistical profiler.

Bug fixes, in particular:

- Fixed handling of Control-C in FriCAS compiled by recent sbcl.

- Fixed HyperDoc crash due to bad handling of '#'.

- Fixed power series expanders for elliptic integrals.

- Fixed 'possible wild ramifcation' problem with algebraic
  integrals.

- 'has' in interpreter now correctly handles '%'.

- Spad compiler can now handle single '=>' at top level of a function.

- Fixed few problems with conditional types in Spad compiler.


Notable changes in FriCAS 1.1.4 (compared to version 1.1.3):

- New domains for combinatorial probability theory by Franz Lehner.

- Improved integration of algebraic functions.

- Initial support for semirings.

- Updated framework for theory of computations.

- In Spad parser '**', '^' and '->' are now
  right-associative.

- Spad parser now longer transforms relational operators.

- Join of categories is faster which speeds up Spad compiler.

Bug fixes, in particular:

- Retraction of 'rootOf' from Expression(Integer) to AlgebraicNumber
  works now.

- Attempt to print error message about invalid type no longer
  crash (SF 2977357).

- Fixed few problems in Spad compiler dealing with conditional exports.

- HyperDoc now should find all function descriptions (previously
  it missed several).
2012-02-23 19:24:34 +00:00
asau
d3a737bca7 Update to Mathomatic 15.8.0
CHANGES MADE TO MATHOMATIC 15.7.3 TO BRING IT UP TO THE NEXT VERSION:

02/05/12 - The variables command now returns false (with error message) if
           no normal variables are listed with the default or "count"
           command line options.  This is so it can detect numeric-only
           expressions, which may be useful.

02/08/12 - The set command now returns the string "Success." upon success,
           if the debug level is positive or zero.  m4 Mathomatic startup
           m4 scripts required adjustment, so they wouldn't repeatedly say
           "Success.".

02/13/12 - The variables command by default now displays e, i, pi as e#, i#,
           and pi#, so you can tell they are not normal variables.  This
           affected other functionality of the variables command, fix was
           uploaded before the end of the day.

02/14/12 - Change of 12/24/11 was undone.  Many expressions containing the
           imaginary unit, such as the complex exponential expansion of the
           tangent function, were not getting simplified with the simplify
           command.  See the complex number problem in "misc/known_bugs.txt".
           Simplification should work better now for expressions containing
           division by complex numbers.

Mathomatic version 15.8.0 released Saturday 02/18/12.

CHANGES MADE TO MATHOMATIC 15.7.2 TO BRING IT UP TO THE NEXT VERSION:

Some minor user interface improvements were made.

12/14/11 - Further improved parse_complex(), so simplify works better and
           the divide command no longer approximates, giving more accurate
           symbolic answers.

12/18/11 - Combining powers and different denominators that contain absolute
           values like ((x^2)^.5) is now prevented.  This allows correct
           simplification and solving when dealing with absolute values.
           Tested with the Batman equations, which, when plotted
           display the Batman logo ("tests/batman_plot").

12/21/11 - Moved place where 1/i is converted to -i to within the complex
           number division handler, making complex number results more
           consistent and correct.

12/23/11 - Changed the chief author's main email address to
           "gesslein@mathomatic.org".  The old linux.com email address didn't
           seem to work, reliability issues, etc.

12/24/11 - Combining different denominators that contain the imaginary unit
           (i) is now prevented.  This prevents getting different answers
           after simplifying a complicated complex number expression.

01/01/12 - All copyright dates updated to include the new year 2012.
           Happy New Year everybody!

           "set html" in the library now allows pretty HTML output with
           redirected output and with 2D library result string expression
           output ("set display2d" or display command).
           Still no color HTML output for the library.

01/04/12 - Improvement to simplification made, less unnecessary divisions
           and prettier results of the simplify command.  Needs testing.

01/05/12 - Added color HTML output for redirected output when using the
           symbolic math library.

01/24/12 - Increased the size of icons/mathomatic.png to 64x64 and made
           it look nicer.  This is the new, resizeable Mathomatic logo:
           icons/mathomatic.svg.

01/25/12 - Published makenews.sh script to make the NEWS file out of the
           changes.txt file.

01/26/12 - Added tests/demo and tests/demo_sub, to run specific scripts,
           and create complete HTML output files from them.  These are used
           to create the examples on the Mathomatic website.

Mathomatic version 15.7.3 released Wednesday 02/01/12.

CHANGES MADE TO MATHOMATIC 15.7.1 TO BRING IT UP TO THE NEXT VERSION:

A C code cleanup was performed and new debugging/self-checking code was added.

11/19/11 - "make uninstall" now uninstalls the prime number tools and
           symbolic math library too.

11/20/11 - Cleaned up calculate command to allow feedback iteration of more
           than one expression at a time, for a consistent user interface.

11/22/11 - The Mathomatic command "help geometry" now enters the common
           geometry formulas for you, into equation spaces.

           Added "help conversions" which enters some common metric/English
           conversion formulas; with it, you just select the equation that
           does what you want, solving for the desired unit of measurement.
           Then you just type "repeat calculate" to try different values.
           "tests/geometry.in" and "tests/conversions.in" have been
           subsequently removed.

11/25/11 - When compiled for the Symbolic Math Library, Mathomatic defaults
           to single-line output ("set no display2d"), so that output can be
           easily fed back into the input.  Otherwise, output defaults to
           2D mode ("set display2d").  Mathomatic no longer ignores the
           display2d flag when using the Symbolic Math Library.

11/26/11 - The command "factor number" now works in the symbolic math library,
           similarly to the way it works in the Mathomatic application.

11/27/11 - matho-sumsq in the Prime Number Tools now gets its input from
           standard input, if invoked with no arguments.

11/29/11 - Added shell script "misc/testprimes" for a parallel, brute force
           test for the first 50,000,000 primes generated by matho-primes.
           Read the shell script for more information.  Runs in 30 seconds on
           a fast, dual-core computer.

11/30/11 - Added -m option to matho-primes, which allows specifying a
           memory size multiplier.

12/02/11 - Added ability to push a text string into the readline history
           buffer, with the "push string" command.  Whenever the command
           "push equation-number-ranges" fails, the entire argument text
           string is pushed, instead.

12/03/11 - Made it so that entering "#" followed by a variable name at the main prompt
           searches backwards through all equation spaces for that variable, and then
           selecting and displaying that equation space. "/" followed by a variable name
           performs similarly, but searches forward.

12/04/11 - Added "help main" command, which lists all things allowed at the
           main prompt.

           Added "tests/cubic2.in", which is the general cubic polynomial
           formula using 2 equations.

           Improved display order and functionality of "optimize all" command.

12/11/11 - Better detection of complex numbers with fixed parse_complex()
           internal function.

           Rationalizing denominators that contain absolute values ((x^2)^.5)
           is now prevented.  This was a bug.

Mathomatic version 15.7.2 released Tuesday 12/13/11.

CHANGES MADE TO MATHOMATIC 15.7.0 TO BRING IT UP TO THE NEXT VERSION:

11/03/11 - Added "tests/heart.in", which plots a nice looking heart with
           gnuplot while running Mathomatic.

           Displaying thousands separators in MinGW was failing, now it must
           be specified with the THOUSANDS_SEPARATOR compile-time define.
           Thousands separators are not well supported in most standard C
           libraries, causing failure to display numbers, so they are now
           turned off.  So now "set finance" works in the MS-Windows version,
           it was not working at all before (bug reports, anyone?).

11/04/11 - Testing "set finance" mode when doing the standard Mathomatic
           tests now.  "tests/finance.in" now does "set finance" first thing.
           Do we need a round-up option for "set finance" mode?  Currently
           rounds to nearest cent.

11/06/11 - Some minor improvements to the Mathomatic symbolic math library
           error handling output were made.  And no more redundant nor
           inappropriate things are sent to standard output when SILENT=0,
           only helpful messages are output.

           Added the "unfactor count" command option, which also displays the
           resulting number of additive terms in each equation side.

11/10/11 - Improved error and warning messages.

           Rearrangements were made for future reliability and thorough
           testing.

11/11/11 - Allow multiple equation-number-ranges for the simplify command.

11/12/11 - Code cleanup and added more DEBUG error checking.

           Added a little helpful color to the help command.

11/13/11 - "repeat echo -" now draws a line of dashes, "repeat echo" clears
           the screen, etc.

           The derivative command now properly terminates as soon as the
           derivative reaches 0, whenever an order greater than 1 is
           specified.  Previously it just kept differentiating, order times.
           The number of derivatives taken until the result reached 0 is
           displayed.  No primes are added to the LHS variable if the required
           number of primes to add won't fit in the variable name.  Previously
           it gave the wrong number of primes (') if they all didn't fit.

           Cleanup of the Mathomatic Prime Number Tools and their man pages.

11/14/11 - Fixed a missing check for out of memory failure in plot command.

           Plotting expressions with sign variables in them now gives a
           suggestion to try "simplify sign" first, because gnuplot doesn't
           handle +/- or sign variables, but it can plot multiple
           expressions at once.

11/17/11 - Made "make test" and ./t work under Cygwin, by ignoring trailing
           carriage returns when comparing test output.

Mathomatic version 15.7.1 released Friday 11/18/11.

CHANGES MADE TO MATHOMATIC 15.6.5 TO BRING IT UP TO THE NEXT VERSION:

A C code cleanup was done.

10/02/11 - Allow an equation-number-range to be specified on the calculate
           command command-line, so that multiple equation spaces can be
           calculated automatically with a single command.

10/19/11 - Improved nintegrate command results.  nintegrate of cos(sin(x+1))
           wrt x from 0 to 1 now always gives the correct simplified result.
           Rewrote to allow specifying lower and upper bounds on command line.

10/20/11 - Divide command improved: Allow specifying the dividend and divisor
           on the command line.  Other minor fixes.

           The Mathomatic command "plot x^2" works now, Mathomatic
           automatically replaces all ^ with ** on the plot command line.

10/21/11 - Added compilation option -fexceptions to CFLAGS in the Mathomatic
           application and library makefiles and build scripts.  May be why
           exception handling wasn't working well in the past.

10/22/11 - Fixed the display command in the symbolic math library to respond
           to "set columns=number" to cut-off the 2D expression output string
           at the number column, instead of always 80 columns.  And Unix shell
           style redirection for the display command works now, to be
           consistent with the other library commands, simultaneously
           returning a single 2D expression string (width controlled by the
           "set columns" variable) and outputting all specified 2D expressions
           to the file pointed to by gfp (width limit set to infinity).

           Trying to remove -lncurses from ld command line again, getting more
           build failures because of it.  To compile under old Red Hat Linux,
           "LDLIBS=-lncurses make READLINE=1" must be used now.  All other
           distros should easily compile with no changes now.

10/24/11 - Added the "variables count" option, to display the counts of each
           variable in the specified expressions or equations.

11/01/11 - Added "NEWS" file, which is just "changes.txt" reversed. "NEWS" is
           ordered neatly with the latest changes at the top.

Mathomatic version 15.7.0 released Wednesday 11/02/11.

CHANGES MADE TO MATHOMATIC 15.6.4 TO BRING IT UP TO THE NEXT VERSION:

8/25/11 - Now allowing balanced parentheses with anything inside them in
          variable names, so that they can preserve functions temporarily.
          Just type "set special ()" to use this option and stop getting
          errors when entering functions.  They will not be real functions,
          just variables whose name is the complete function string.

8/27/11 - Added sinc(x) function to m4 Mathomatic, which is the normalized
          sinc function, defined as sin(pi*x)/(pi*x).

8/31/11 - Split off the generally useful stuff and general C math defines
          from am.h to standard.h; am.h only contains Mathomatic defines now.
          standard.h and complex_lib.c with complex.h can be included in
          your C math programs if you like, with no changes required.
          Use of gcd.c in other floating point programs that need a gcd() or
          double-to-fraction convert function is recommended.  The code
          has been heavily tested by this CAS.

9/02/11 - Fixed and tested the variables command to handle complex number
          equations better.

9/04/11 - Cleaned up and improved documentation on modular arithmetic and
          its options.  Mathomatic can simplify, calculate, and even solve
          modular arithmetic!

9/06/11 - The 2D display command's internals were
          rewritten to allow outputting to C string buffers.  This allows
          the display command to return a multi-line, formatted expression
          string when using the Symbolic Math Library.  Note that there is
          no color mode when outputting to a C string, but if you send the
          string to a terminal, it displays the specified equation space
          nicely in 2D fraction format.

9/18/11 - Mathomatic "help color" command page created.

9/19/11 - Ported Mathomatic to latest OpenIndiana SunOS operating system.
          Some changes were required and implemented for easier compilation.
          All tests passed!

9/24/11 - Improved set command error reporting.

Mathomatic version 15.6.5 released Sunday 09/25/11.

CHANGES MADE TO MATHOMATIC 15.6.3 TO BRING IT UP TO THE NEXT VERSION:

8/05/11 - Approximating complex number roots only when helpful or approximating,
          improving some results when imaginary numbers are used; for example,
          simplifying sqrt(sin(x)) now returns the best possible result.

8/06/11 - Added "make strip" target to allow easily running the Unix strip
          utility on the resulting binaries.
          Deleted the "make install-strip" and "make bininstall-strip" targets.

          Additionally display C compiler version number in version command.

8/09/11 - Added ability to make a shared library of the Symbolic Math Library,
          using the cmake utility.  "CMakeLists.txt" was the only file changed.
          The shared library is thoroughly UNtested.  :-)

8/13/11 - A colon character (:) placed before any main prompt input will make
          it ignore any error occuring in that particular line, so any current
          read operation won't abort.  Any Mathomatic command preceded with a
          colon will always return with successful status.

          File "misc/identities.in" was added, showing a strength and weakness
          of Mathomatic.

          Removed "doc" target in makefile, due to interference from a
          directory of the same name; use the "html" target instead.

          Added cheat card "doc/quickrefcard.html", created by "make htmlcard"
          and scripts "makehtmlcard.sh" and "makehtmlcard.awk".  The PDF of
          this currently has to be made manually with a web browser, using
          print to PDF file.

          Added ability to automatically create cheat sheet "quickref.pdf",
          created by "make pdfsheet", which invokes script "makepdfsheet.sh".

8/19/11 - General complex number root approximation bug fix: expressions like
          sqrt(sin(9)) now give the correct result, instead of a negative
          number, when using the calculate command.  The calculate command is
          used to immediately evaluate it when you type "sqrt(sin(9))" into
          the m4 Mathomatic main prompt.

8/20/11 - The variables command now defines all "integer" and "sign" variables
          as "int" instead of "double".

8/21/11 - Rewrote the code command code lister to allow output to a C string.
          Code command is now completely available with string output in the
          Symbolic Math Library, meaning Mathomatic can automatically
          generate programming language code within other programs now.

Mathomatic version 15.6.4 released Wednesday 08/24/11.

CHANGES MADE TO MATHOMATIC 15.6.2 TO BRING IT UP TO THE NEXT VERSION:

Source code and user documentation cleanup and corrections.

Creating a PDF book from the Mathomatic man pages with "make bookman" is more
likely to work now.  Package txt2man must be installed to run "make bookman".

6/24/11 - Added file misc/known_bugs.txt, which is the current list of known
          bugs in Mathomatic.

7/04/11 - Added file tests/quadratic.in, just a script that solves the general
          quadratic equation.

7/06/11 - Fixed error messaging to not always give command usage information
          when a command fails or gives a negative result.
          Now only gives command usage info when helpful,
          like when something on the command line is incorrect.

7/07/11 - Fixed the Mathomatic derivative command to not fail with a helpful
          error message when the derivative is zero.
          Now it just gives a warning message along with the successful
          result of the constant zero.

7/23/11 - Mathomatic no longer compiles correctly with the latest Xcode gcc,
          due to a bug in Apple's gcc optimizer.  Either turn the optimizer
          completely off when compiling with Xcode, or use the gcc provided
          by MacPorts.  Xcode version 3.x and other non-Apple C compilers will
          work fine.  All mention of Xcode has been removed from the
          Mathomatic distribution.

7/28/11 - Balanced parentheses and brackets are now allowed in variable names,
          if the "set special_variable_characters" command is run first.
          For example, "set special ()" will allow entry of named functions,
          converting them to variables, which might be useful in some cases.
          However, entry of variables like "f(x)" will not be differentiatable,
          because there is no "x" variable in that, only the "f(x)" variable.
          There can be no spaces encountered in the function; variable names
          end at any non-variable character, including space characters.  I
          can change this, if anyone requests it.

          Entry of array elements is still possible with "set special []".
          This is the default.

7/29/11 - Prompts are now blue when reading files into Mathomatic in color mode.

7/30/11 - Allow an equation number range on the solve command line, for faster,
          more automated solving.  If you want to solve all entered equations
          for x, just type "solve all x" or "solve verify all for x" to be sure.

7/31/11 - Allow "repeat read filename" command, which repeatedly reads a script
          until it fails or is aborted.

8/04/11 - "make install" now shows if installed executables are new or have
          changed since the last install.

Mathomatic version 15.6.3 released Thursday 08/04/11.

CHANGES MADE TO MATHOMATIC 15.6.1 TO BRING IT UP TO THE NEXT VERSION:

6/06/11 - Corrected datadir variable usage in the main Mathomatic makefile.
          Directly importing datadir could have catastrophically deleted the
          entire /usr/share directory with "make uninstall".

6/12/11 - Added proper compilation option (WIN32_CONSOLE_COLORS) for color mode
          in MinGW, in case use with mintty.exe is desired.

Mathomatic version 15.6.2 released Sunday 06/12/11.

CHANGES MADE TO MATHOMATIC 15.6.0 TO BRING IT UP TO THE NEXT VERSION:

The Mathomatic user documentation and help have been shaped up.

A BOLD_COLOR compile-time flag was added, to make Mathomatic default to
using bold color mode.  Used on the Mac and Windows versions of
Mathomatic now.

5/8/11 - The "factor number" command now allows number ranges, in addition
         to integers and integer expressions.

5/9/11 - Install "m4/functions.m4" to proper directory (/usr/share/mathomatic/m4).
         The "m4" directory is no longer installed to the system doc directory.
         A big thanks to Terje Røsten of Fedora for showing me the way on this,
         and for his timely Mathomatic package maintenance in Fedora Linux.

5/11/11 - The matho-primes utility can now be run from within Mathomatic by typing
          "list primes".  Put any arguments you want to pass to matho-primes on the
          "list primes" command line.  Redirection doesn't work yet for this, so it
          remains undocumented.

5/15/11 - Added NOGAMMA compile-time define, which makes the factorial function
          integer only, if desired.

          Added color mode to the MinGW Windows version of Mathomatic, thanks to
          Doug Snead for the code.  Tested in cmd.exe, command.com, and CygWin.
          The new color mode does not work in mintty.exe.

5/16/11 - Allow defining SILENT=0 when compiling the symbolic math library,
          so that "set debug level" works and normal Mathomatic debugging works
          within the library code.  Thanks to Doug Snead for suggesting this.

5/21/11 - Changed "make check" to not use the time command, as /usr/bin/time is not
          available on all systems.  "make test" performs the same function and
          still uses time.

5/23/11 - Updated the Free Software Foundation's address in the LGPL license text
          and in all source files.

Mathomatic version 15.6.1 released Sunday 06/05/11.
2012-02-23 07:57:55 +00:00
hans
d1ecc9f11a Uses a BSD makefile. 2012-02-16 19:04:52 +00:00
sbd
cea7c87537 Add SET_LIBDIR=yes 2012-02-09 21:44:27 +00:00
obache
e07b50db54 distutils pkg, register egg-info.
Bump PKGREVISION.
2012-02-09 13:09:09 +00:00
drochner
6ec364640d +gcalctool-gtk3 2012-02-09 12:42:21 +00:00
drochner
3a46bba6bf import gcalctool-6.2.0 which requires gtk3, thus the name, from
Patrick Welche per PR pkg/45923
2012-02-09 12:38:23 +00:00
wiz
5a1e8b0499 Revbump for
a) tiff update to 4.0 (shlib major change)
b) glib2 update 2.30.2 (adds libffi dependency to buildlink3.mk)

Enjoy.
2012-02-06 12:40:37 +00:00
sbd
0baf031533 Recursive dependency bump for databases/gdbm ABI_DEPENDS change. 2012-01-24 09:10:50 +00:00
obache
779bcb3c9b Update ruby-spreadsheet to 0.6.8.
=== 0.6.8 / 20.01.2012

* adds the fix to allow the writing of empty rows, by ClemensP.
* Test also by ClemensP.
2012-01-21 06:12:19 +00:00
drochner
a926dcb913 disable gnome desktop integration features which depend on libgsf-gnome,
the latter is discontinued upstream
bump PKGREV
2012-01-18 18:31:10 +00:00
obache
49399609af Update ruby-spreadsheet to 0.6.7.
=== 0.6.7 / 18.01.2012

* http://dev.ywesee.com/wiki.php/Gem/Spreadsheet points point 2.
* Tests by Michal
* Patches by Timon

=== 0.6.6 / 18.01.2012

* http://dev.ywesee.com/wiki.php/Gem/Spreadsheet points 8 and 9.
* Fixes byjsaak@napalm.hu
* Patches by Vitaly Klimov
2012-01-18 10:27:02 +00:00
sbd
d1600f8e13 The gnu triple for Linux is *-*-linux not *-*-linux-gnu. 2012-01-16 21:02:20 +00:00
obache
368da44445 gsed related clean up.
* Stop to treat NetBSD's sed as GNU sed, not full compatible.
  * Then, no need to reset TOOLS_PLATFORM.gsed for NetBSD if USE_TOOLS+=gsed and
    real GNU sed is required.
  * In addition, convert simple USE_TOOLS+=gsed to conditionally, without NetBSD.
* convert {BUILD_,}DEPENDS+=gsed to USE_TOOLS, all tools from gsed are real gsed.
2012-01-14 07:44:33 +00:00
hans
817fe29d66 Force real gsed only on NetBSD. 2012-01-14 03:36:42 +00:00
hans
7d9c271160 Convert the remaining few packages that explicitly set DEPENDS or
BUILD_DEPENDS on bison to USE_TOOLS=bison. The minimum bison version
required in mk/tools/bison.mk is good enough for all of them.
2012-01-14 00:51:36 +00:00
obache
615c758c19 Recursive bump from audio/libaudiofile, x11/qt4-libs and x11/qt4-tools ABI bump. 2012-01-13 10:54:43 +00:00
asau
ba06166a1d Update to Maxima 5.26.0
No detailed list of changes since 5.24.0
2012-01-10 03:38:08 +00:00
dholland
95bd5e10a6 Update from 5.3.1 to 5.5.2 to improve the chances of building.
(Leaf package, so ok during freeze.)

Upstream changelog:

2009.08.14: Changes between NTL 5.5.1 and 5.5.2

    New routines MulAddTo and MulSubFrom for computing x += a*b and x
-= a*b, where x and a are ZZ's and b is a ZZ or a long. In the case
where b is a long, this may be much faster than writing mul(t, a, b);
add(x, x, t). See ZZ.txt for details. These new routines are used in a
number of places in NTL to get faster algorithms (for example, the LLL
routine).
    Fixed a relatively benign indexing bug in GF2EX discovered by
Berend-Benjamin Tams using the valgrind tool.

2009.05.05: Changes between NTL 5.5 and 5.5.1

    If using GMP (via either NTL_GMP_LIP or NTL_GMP_HACK), then the
new version (4.3.0) of GMP implements the XGCD functionality
differently, so that the coefficients do not always agree with those
returned by the classical extended Euclidean algorithm. This version
of NTL corrects the coefficients, so that the "classical" coefficients
are always produced, regardless of GMP's implementation. This version
of NTL also works around a bug in GMP 4.3.0's XGCD code (although that
bug should be fixed in GMP 4.3.1).
    The configure script has been slightly modified: there is a new
configuration variable DEF_PREFIX, whose value can be used to set
PREFIX, GMP_PREFIX, and GF2X_PREFIX in one stroke. Also, the (somewhat
esoteric) configure variables GMP_LIBDIR, GMP_INCDIR, GF2X_LIBDIR, and
GF2X_INCDIR have slightly different meanings now.

2009.04.08: Changes between NTL 5.4.2 and 5.5

    Added the ability to generate a shared library (with help from Tim
Abbott). Details.
    Fixed some standardization issues (with help from Tim Abbot):
default location of installed documentation files now conforms to
standards; use of EOF now conforms to standards.
    Added a callback mechanism to NTL's error reporting function. See
ErrorCallback in tools.txt.
    Added support for the gf2x library for speeding up arithmetic in
GF2X (with help from Emmanuel Thom?). Details.
    In conjuction with the above, I also changed the GF2X so that it
works better with very large polynomials: large blocks of memory are
released, recursive HalfGCD algorithms are used for large polynomials.
    Fixed a bug in void TraceMod(zz_p& x, const zz_pX& a, const
zz_pXModulus& F) (reported by Luca De Feo).
    Fixed a performance issue in various versions of SetCoeff
(reported by Luca De Feo).
    Fixed the declaration of mat_zz_p transpose(const mat_zz_p& a)
(reported by Benoit Lacelle).

2008.03.05: Changes between NTL 5.4.1 and 5.4.2

    Fixed a bug in the sub(ZZ_pEX, ZZ_pE, ZZ_pEX) and sub(zz_pEX,
zz_pE, zz_pEX) routines (reported by Charanjit Jutla). Under certain
circumstances, these could outout wrong answers.

2007.05.09: Changes between NTL 5.4 and 5.4.1

    Fixed rounding bug in expm1 (reported by Paul Zimmermann).
    Fixed memory leak in several LLL routines (reported by Friedrich Bahr).
    Fixed infinite loop in several LLL routines (this only occurred on
machines, like x86, with double rounding).
    Improved GF2X timing tests (suggested by Paul Zimmermann).

2005.03.24: Changes between NTL 5.3.2 and 5.4

    By default, NTL now compiles in ISO mode (using namespaces,
etc.). You can always revert to traditional mode by unsetting the flag
NTL_STD_CXX (either pass NTL_STD_CXX=off to the configure script, or
manually edit the config.h file).

    Some bug fixes:
        The sqrt and log1p routines for the RR class would produce
incorrectly rounded results in certain circumstances (although this
only affected the relative error of the result very marginally).
        The SqrRootPrec routine for the RR class could not be called,
because it was defined incorrectly.

    Thanks to Paul Zimmermann for finding (and fixing) these bugs!
Paul has also validated NTL's RR class by cross-checking it with the
MPFR library.

    Some performance enhancements:
        Added a new MulModPrecon inline function for computing (a * b)
% n for single precision numbers, when b and n are fixed for several
computations. On some platforms this can be twice as fast or more than
the old MulMod2 routine. This indirectly affects a lot of computations
that are done via homomorphic imaging (polynomial multiplication over
zz_p, ZZ_p, and ZZ, matrix computations over zz_p and ZZ).
        Rewrote the small prime FFT to take advantage of the new
MulModPrecon, and to be more cache friendly.
        Improved the performance of the GF2X multiplication
routine. On some platforms, it can be twice as fast as the old
one. Thanks (again) to Paul Zimmermann for suggesting some of these
improvements and supplying some of the code.

    Miscellany:
        Rewrote several of the installation scripts in Perl (the old
shell scripts were getting too messy to maintain). However, the syntax
for all of the command-line interfaces remains identical.

2004.05.21: Changes between NTL 5.3.1 and 5.3.2

    Some bug fixes.

    Re-wrote SqrRootMod to make it run faster.
2012-01-02 23:42:27 +00:00
joerg
2947dd45ea Don't try to use namespace with math functions, it doesn't work reliable
with different compilers.
2011-12-29 16:33:09 +00:00
asau
1ca95f59ca Update to Octave 3.4.3
This makes the package build and work at least in NetBSD on some platforms.


Summary of important user-visible changes for version 3.4.3:
-----------------------------------------------------------

 ** Octave 3.4.3 is a bug fixing release.

Summary of important user-visible changes for version 3.4.2:
-----------------------------------------------------------

 ** Octave 3.2.4 fixes some minor installation problems that affected
    version 3.4.1.

Summary of important user-visible changes for version 3.4.1:
-----------------------------------------------------------

 ** Octave 3.4.1 is primarily a bug fixing release.

 ** IMPORTANT note about binary incompatibility in this release:

    Binary compatibility for all 3.4.x releases was originally planned,
    but this is impossible for the 3.4.1 release due to a bug in the way
    shared libraries were built in Octave 3.4.0.  Because of this bug,
    .oct files built for Octave 3.4.0 must be recompiled before they
    will work with Octave 3.4.1.

    Given that there would be binary incompatibilities with shared
    libraries going from Octave 3.4.0 to 3.4.1, the following
    incompatible changes were also made in this release:

      * The Perl Compatible Regular Expression (PCRE) library is now
        required to build Octave.

      * Octave's libraries and .oct files are now installed in
        subdirectories of $libdir instead of $libexecdir.

    Any future Octave 3.4.x release versions should remain binary
    compatible with Octave 3.4.1 as proper library versioning is now
    being used as recommended by the libtool manual.

 ** The following functions have been deprecated in Octave 3.4.1 and will
    be removed from Octave 3.8 (or whatever version is the second major
    release after 3.4):

      cquad  is_duplicate_entry  perror  strerror

 ** The following functions are new in 3.4.1:

      colstyle  gmres  iscolumn  isrow  mgorth  nproc  rectangle

 ** The get_forge_pkg function is now private.

 ** The rectangle_lw, rectangle_sw, triangle_lw, and triangle_sw
    functions are now private.

 ** The logistic_regression_derivatives and logistic_regression_likelihood
    functions are now private.

 ** ChangeLog files in the Octave sources are no longer maintained
    by hand.  Instead, there is a single ChangeLog file generated from
    the Mercurial version control commit messages.  Older ChangeLog
    information can be found in the etc/OLD-ChangeLogs directory in the
    source distribution.

Summary of important user-visible changes for version 3.4:
---------------------------------------------------------

 ** BLAS and LAPACK libraries are now required to build Octave.  The
    subset of the reference BLAS and LAPACK libraries has been removed
    from the Octave sources.

 ** The `lookup' function was extended to be more useful for
    general-purpose binary searching.  Using this improvement, the
    ismember function was rewritten for significantly better
    performance.

 ** Real, integer and logical matrices, when used in indexing, will now
    cache the internal index_vector value (zero-based indices) when
    successfully used as indices, eliminating the conversion penalty for
    subsequent indexing by the same matrix.  In particular, this means it
    is no longer needed to avoid repeated indexing by logical arrays
    using find for performance reasons.

 ** Logical matrices are now treated more efficiently when used as
    indices.  Octave will keep the index as a logical mask unless the
    ratio of true elements is small enough, using a specialized
    code.  Previously, all logical matrices were always first converted
    to index vectors.  This results in savings in both memory and
    computing time.

 ** The `sub2ind' and `ind2sub' functions were reimplemented as compiled
    functions for better performance.  These functions are now faster,
    can deliver more economized results for ranges, and can reuse the
    index cache mechanism described in previous paragraph.

 ** The built-in function equivalents to associative operators (`plus',
    `times', `mtimes', `and', and `or') have been extended to accept
    multiple arguments.  This is especially useful for summing
    (multiplying, etc.) lists of objects (of possibly distinct types):

      matrix_sum = plus (matrix_list{:});

 ** An FTP object type based on libcurl has been implemented.  These
    objects allow ftp connections, downloads and uploads to be
    managed.  For example,

      fp = ftp ("ftp.octave.org);
      cd (fp, "gnu/octave");
      mget (fp, "octave-3.2.3.tar.bz2");
      close (fp);

 ** The default behavior of `assert (observed, expected)' has been
    relaxed to employ less strict checking that does not require the
    internals of the values to match.  This avoids previously valid
    tests from breaking due to new internal classes introduced in future
    Octave versions.

    For instance, all of these assertions were true in Octave 3.0.x
    but false in 3.2.x due to new optimizations and improvements:

      assert (2*linspace (1, 5, 5), 2*(1:5))
      assert (zeros (0, 0), [])
      assert (2*ones (1, 5), (2) (ones (1,5)))

 ** The behavior of library functions `ismatrix', `issquare', and
    `issymmetric' has been changed for better consistency.

    * The `ismatrix' function now returns true for all numeric,
      logical and character 2-D or N-D matrices.  Previously, `ismatrix'
      returned false if the first or second dimension was zero.
      Hence, `ismatrix ([])' was false,
      while `ismatrix (zeros (1,2,0))' was true.

    * The `issquare' function now returns a logical scalar, and is
      equivalent to the expression

        ismatrix (x) && ndims (x) == 2 && rows (x) == columns (x)

      The dimension is no longer returned.  As a result, `issquare ([])'
      now yields true.

    * The `issymmetric' function now checks for symmetry instead of
      Hermitianness.  For the latter, ishermitian was created.  Also,
      logical scalar is returned rather than the dimension, so
      `issymmetric ([])' is now true.

 ** Function handles are now aware of overloaded functions.  If a
    function is overloaded, the handle determines at the time of its
    reference which function to call.  A non-overloaded version does not
    need to exist.

 ** Overloading functions for built-in classes (double, int8, cell,
    etc.) is now compatible with Matlab.

 ** Function handles can now be compared with the == and != operators,
    as well as the `isequal' function.

 ** Performance of concatenation (using []) and the functions `cat',
    `horzcat', and `vertcat' has been improved for multidimensional
    arrays.

 ** The operation-assignment operators +=, -=, *= and /= now behave more
    efficiently in certain cases.  For instance, if M is a matrix and S a
    scalar, then the statement

      M += S;

    will operate on M's data in-place if it is not shared by another
    variable, usually increasing both time and memory efficiency.

    Only selected common combinations are affected, namely:

      matrix += matrix
      matrix -= matrix
      matrix .*= matrix
      matrix ./= matrix

      matrix += scalar
      matrix -= scalar
      matrix *= scalar
      matrix /= scalar

      logical matrix |= logical matrix
      logical matrix &= logical matrix

    where matrix and scalar belong to the same class.  The left-hand
    side must be a simple variable reference.

    Moreover, when unary operators occur in expressions, Octave will
    also try to do the operation in-place if it's argument is a
    temporary expresssion.

 ** The effect of comparison operators (<, >, <=, and >=) applied to
    complex numbers has changed to be consistent with the strict
    ordering defined by the `max', `min', and `sort' functions.  More
    specifically, complex numbers are compared by lexicographical
    comparison of the pairs `[abs(z), arg(z)]'.  Previously, only real
    parts were compared; this can be trivially achieved by wrapping the
    operands in real().

 ** The automatic simplification of complex computation results has
    changed.  Octave will now simplify any complex number with a zero
    imaginary part or any complex matrix with all elements having zero
    imaginary part to a real value.  Previously, this was done only for
    positive zeros.  Note that the behavior of the complex function is
    unchanged and it still produces a complex value even if the
    imaginary part is zero.

 ** As a side effect of code refactoring in liboctave, the binary
    logical operations are now more easily amenable to compiler
    optimizations and are thus significantly faster.

 ** Octave now allows user-defined `subsasgn' methods to optimize out
    redundant copies.  For more information, see the manual.

 ** More efficient matrix division handling.  Octave is now able to
    handle the expressions

       M' \ V
       M.' \ V
       V / M

    (M is a matrix and V is a vector) more efficiently in certain cases.
    In particular, if M is triangular, all three expressions will be
    handled by a single call to xTRTRS (from LAPACK), with appropriate
    flags.  Previously, all three expressions required a physical
    transpose of M.

 ** More efficient handling of certain mixed real-complex matrix
    operations.  For instance, if RM is a real matrix and CM a complex
    matrix,

      RM * CM

    can now be evaluated either as

      complex (RM * real (CM), RM * imag (CM))

    or as

      complex (RM) * CM,

    depending on the dimensions.  The first form requires more
    temporaries and copying, but halves the FLOP count, which normally
    brings better performance if RM has enough rows.  Previously, the
    second form was always used.

    Matrix division is similarly affected.

 ** More efficient handling of triangular matrix factors returned from
    factorizations.  The functions for computing QR, LU and Cholesky
    factorizations will now automatically return the triangular matrix
    factors with proper internal matrix_type set, so that it won't need
    to be computed when the matrix is used for division.

 ** The built-in `sum' function now handles the non-native summation
    (i.e., double precision sum of single or integer inputs) more
    efficiently, avoiding a temporary conversion of the whole input
    array to doubles.  Further, `sum' can now accept an extra option
    argument, using a compensated summation algorithm rather than a
    straightforward sum, which significantly improves precision if lots
    of cancellation occurs in the summation.

 ** The built-in `bsxfun' function now uses optimized code for certain
    cases where built-in operator handles are passed in.  Namely, the
    optimizations concern the operators `plus', `minus', `times',
    `ldivide', `rdivide', `power', `and', `or' (for logical arrays),
    the relational operators `eq', `ne', `lt', `le', `gt', `ge', and the
    functions `min' and `max'.  Optimizations only apply when both
    operands are of the same built-in class.  Mixed real/complex and
    single/double operations will first convert both operands to a
    common type.

 ** The `strfind' and `strrep' functions now have compiled
    implementations, facilitating significantly more efficient searching
    and replacing in strings, especially with longer patterns.  The code
    of `strcat' has been vectorized and is now much more efficient when
    many strings are concatenated.  The `strcmpi' and `strncmpi'
    functions are now built-in functions, providing better performance.

 ** Matlab-style ignoring input and output function arguments using
    tilde (~) is now supported.  Ignored output arguments may be
    detected from a function using the built-in function `isargout'.
    For more details, consult the manual.

 ** The list datatype, deprecated since the introduction of cells, has
    been removed.

 ** The accumarray function has been optimized and is now significantly
    faster in certain important cases.

 ** The behavior of isreal and isnumeric functions was changed to be more
    Matlab-compatible.

 ** The integer math & conversion warnings (Octave:int-convert-nan,
    Octave:int-convert-non-int-val, Octave:int-convert-overflow,
    Octave:int-math-overflow) have been removed.

 ** rem and mod are now built-in functions.  They also handle integer
    types efficiently using integer arithmetic.

 ** Sparse indexing and indexed assignment has been mostly rewritten.
    Since Octave uses compressed column storage for sparse matrices,
    major attention is devoted to operations manipulating whole columns.
    Such operations are now significantly faster, as well as some other
    important cases.

    Further, it is now possible to pre-allocate a sparse matrix and
    subsequently fill it by assignments, provided they meet certain
    conditions.  For more information, consult the `spalloc' function,
    which is no longer a mere dummy.  Consequently, nzmax and nnz are no
    longer always equal in Octave.  Octave may also produce a matrix
    with nnz < nzmax as a result of other operations, so you should
    consistently use nnz unless you really want to use nzmax (i.e. the
    space allocated for nonzero elements).

    Sparse concatenation is also affected, and concatenating sparse
    matrices, especially larger collections, is now significantly more
    efficient.  This applies to both the [] operator and the
    cat/vertcat/horzcat functions.

 ** It is now possible to optionally employ the xGESDD LAPACK drivers
    for computing the singular value decomposition using svd(), instead
    of the default xGESVD, using the configuration pseudo-variable
    svd_driver.  The xGESDD driver can be up to 6x times faster when
    singular vectors are requested, but is reported to be somewhat less
    robust on highly ill-conditioned matrices.

 ** Configuration pseudo-variables, such as page_screen_output or
    confirm_recursive_rmdir (or the above mentioned svd_driver), now
    accept a "local" option as second argument, requesting the change
    to be undone when the current function returns:

    function [status, msg] = rm_rf (dir)
      confirm_recursive_rmdir (false, "local");
      [status, msg] = rmdir (dir, "s");
      ...
    endfunction

    Upon return, confirm_recursive_rmdir will be restored to the value
    it had on entry to the function, even if there were subsequent
    changes to the variable in function rm_rf or any of the functions
    it calls.

 ** pkg now accepts a -forge option for downloading and installing
    packages from Octave Forge automatically.  For example,

      pkg install -forge general

    will automatically download the latest release of the general
    package and attempt to install it. No automatic resolving of
    dependencies is provided.  Further,

      pkg list -forge

    can be used to list all available packages.

  ** The internal data representation of structs has been completely
     rewritten to make certain optimizations feasible.  The field data
     can now be shared between structs with equal keys but different
     dimensions or values, making operations that preserve the fields
     faster.  Economized storage is now used for scalar structs (just
     like most other scalars), making their usage more
     memory-efficient.  Certain array-like operations on structs
     (concatenation, uniform cellfun, num2cell) have gained a
     significant speed-up.  Additionally, the octave_scalar_map class
     now provides a simpler interface to work with scalar structs within
     a C++ DLD function.

  ** Two new formats are available for displaying numbers:

       format short eng
       format long eng

     Both display numbers in engineering notation, i.e., mantissa +
     exponent where the exponent is a multiple of 3.

  ** The following functions are new in Octave 3.4:

       accumdim    erfcx        nfields      pqpnonneg  uigetdir
       bitpack     fileread     nth_element  quadcc     uigetfile
       bitunpack   fminbnd      onCleanup    randi      uiputfile
       blkmm       fskipl       pbaspect     repelems   uimenu
       cbrt        ifelse       pie3         reset      whitebg
       curl        ishermitian  powerset     rsf2csf
       chop        isindex      ppder        saveas
       daspect     luupdate     ppint        strread
       divergence  merge        ppjumps      textread

  ** Using the image function to view images with external programs such
     as display, xv, and xloadimage is no longer supported.  The
     image_viewer function has also been removed.

  ** The behavior of struct assignments to non-struct values has been
     changed.  Previously, it was possible to overwrite an arbitrary
     value:

        a = 1;
        a.x = 2;

     This is no longer possible unless a is an empty matrix or cell
     array.

  ** The dlmread function has been extended to allow specifying a custom
     value for empty fields.

  ** The dlmread and dlmwrite functions have been modified to accept
     file IDs (as returned by fopen) in addition to file names.

  ** Octave can now optimize away the interpreter overhead of an
     anonymous function handle, if the function simply calls another
     function or handle with some of its parameters bound to certain
     values.  Example:

       f = @(x) sum (x, 1);

     When f is called, the call is forwarded to @sum with the constant 1
     appended, and the anonymous function call does not occur on the
     call stack.

 ** Deprecated functions.

    The following functions were deprecated in Octave 3.0 and have been
    removed from Octave 3.4.

      beta_cdf         geometric_pdf        pascal_pdf
      beta_inv         geometric_rnd        pascal_rnd
      beta_pdf         hypergeometric_cdf   poisson_cdf
      beta_rnd         hypergeometric_inv   poisson_inv
      binomial_cdf     hypergeometric_pdf   poisson_pdf
      binomial_inv     hypergeometric_rnd   poisson_rnd
      binomial_pdf     intersection         polyinteg
      binomial_rnd     is_bool              setstr
      chisquare_cdf    is_complex           struct_contains
      chisquare_inv    is_list              struct_elements
      chisquare_pdf    is_matrix            t_cdf
      chisquare_rnd    is_scalar            t_inv
      clearplot        is_square            t_pdf
      clg              is_stream            t_rnd
      com2str          is_struct            uniform_cdf
      exponential_cdf  is_symmetric         uniform_inv
      exponential_inv  is_vector            uniform_pdf
      exponential_pdf  isstr                uniform_rnd
      exponential_rnd  lognormal_cdf        weibcdf
      f_cdf            lognormal_inv        weibinv
      f_inv            lognormal_pdf        weibpdf
      f_pdf            lognormal_rnd        weibrnd
      f_rnd            meshdom              weibull_cdf
      gamma_cdf        normal_cdf           weibull_inv
      gamma_inv        normal_inv           weibull_pdf
      gamma_pdf        normal_pdf           weibull_rnd
      gamma_rnd        normal_rnd           wiener_rnd
      geometric_cdf    pascal_cdf
      geometric_inv    pascal_inv

    The following functions were deprecated in Octave 3.2 and will
    be removed from Octave 3.6 (or whatever version is the second major
    release after 3.2):

      create_set          spcholinv    splu
      dmult               spcumprod    spmax
      iscommand           spcumsum     spmin
      israwcommand        spdet        spprod
      lchol               spdiag       spqr
      loadimage           spfind       spsum
      mark_as_command     sphcat       spsumsq
      mark_as_rawcommand  spinv        spvcat
      spatan2             spkron       str2mat
      spchol              splchol      unmark_command
      spchol2inv          split        unmark_rawcommand

    The following functions have been deprecated in Octave 3.4 and will
    be removed from Octave 3.8 (or whatever version is the second major
    release after 3.4):

      autocor  cellidx   gammai     krylovb    values
      autocov  dispatch  glpkmex    replot
      betai    fstat     is_global  saveimage

  * For compatibility with Matlab, mu2lin (x) is now equivalent to
    mu2lin (x, 0).

  * The ARPACK library is now distributed with Octave so it no longer
    needs to be available as an external dependency when building
    Octave.
2011-12-24 23:46:02 +00:00
joerg
619439c8e3 Make sure that printf format specifiers are defined for C++ code 2011-12-22 16:32:04 +00:00
joerg
3dc2bdb235 Make sure that builds with g95 create position independent code.
Bump revision.
2011-12-20 16:38:30 +00:00
wiz
60291a36e4 Fix build with newer GTK2. 2011-12-20 16:14:44 +00:00
wiz
8520efb92d pkglint cleanup 2011-12-20 16:14:38 +00:00
asau
6bc8e48f5f Requires libffi when using ECL. 2011-12-20 08:23:12 +00:00
asau
bf5c753c11 Ignore compilation failure on CLISP: COMPILE-FILE returns failure-p
but CLISP doesn't list any errors.
2011-12-20 08:22:33 +00:00
dholland
c8a7da98a4 Update MASTER_SITES; distfile has been moved to the archives as a new
version is out.
2011-12-20 04:35:44 +00:00
markd
fa40cfe02d s/fortran77/fortran/ - use same fortran as R itself.
No PKGREVISION bump as either this is unchanged or didn't previously build
2011-12-19 22:27:04 +00:00
dholland
27448383b6 If BLAS_LIBS comes back empty, run with it instead of detonating.
This makes it build for me.
2011-12-18 21:32:08 +00:00
marino
5d08d0de7f math/mcsim: Make sure package doesn't try to use tex and friends
Although mcsim.dvi, mcsim.html, and mcsim.texinfo aren't on the PLIST, the
package tries to build them anyway, at least on DragonFly.  This modifies
the documentation makefile to prevent this.  DragonFly doesn't have dvips
and thus the package was failing to build.
2011-12-18 17:12:48 +00:00
marino
2c546ed03b math/randlib: force MKPROFILE=yes to avoid PLIST divergence 2011-12-18 17:11:34 +00:00
marino
74e464e258 math/meschach: force MKPROFILE=yes to avoid PLIST divergence 2011-12-18 17:10:51 +00:00
marino
7f45b3a90b math/dcdflib.c: revert last, force MKPROFILE=yes to avoid PLIST divergence 2011-12-18 17:09:58 +00:00
marino
80014d3874 math/gtklife: Add indirectly linked libraries to LDFLAGS for v2.22 2011-12-18 10:10:16 +00:00
marino
54a4c8f372 math/extcalc: Add indirectly linked libraries to LDFLAGS for v2.22 2011-12-18 10:09:37 +00:00
marino
78a78ee139 math/dcdflib.c: conditional PLIST for DragonFly
DragonFly has not produced _p.a files in a long time.  The PLIST to
modified to exclude libdcdflib_c_p.a if build on DragonFly.
2011-12-18 10:09:02 +00:00
marino
8f8b3cf936 math/clisp-pari: Needs devel/gettext-lib 2011-12-18 10:07:54 +00:00
marino
c140577797 math/calcoo: Add indirectly linked libraries to LDFLAGS for ld v2.22 2011-12-18 10:07:07 +00:00
marino
fbb6385720 math/R: Expand NetBSD floorl patch to DragonFly
DragonFly has the same math limitations as NetBSD, so it needs the same fix.
2011-12-18 02:50:07 +00:00
sbd
8fba8e44a6 Respect CFLAGS and LDFLAGS form pkgsrc.
Bump PKGREVISION
2011-12-16 22:31:46 +00:00
marino
91f17fdad2 math/muparser: Add DragonFly to configure script 2011-12-16 17:16:11 +00:00
sbd
4b3429eff9 Regenerate diffs for GNU patch. 2011-12-14 02:54:27 +00:00
dholland
b34d2651b0 This needs a pile more tex packages to build successfully in a clean
environment. Note: some of the ones I'm adding may not be absolutely
required; I made this list by checking atimes after building R with
all tex stuff available, and confirmed that with (only) these packages
available it does build.

It doesn't help that the R makefile, apparently intentionally, doesn't
stop if running tex fails.
2011-12-12 06:49:26 +00:00
dholland
69a20f1c45 fix pasto 2011-12-11 21:10:05 +00:00
dholland
e3b008b255 Like with elftoolchain, force MKPROFILE=yes to avoid PLIST divergence
between native and bootstrapped builds.
2011-12-11 20:08:00 +00:00
markd
d9ca1b1f5e Add BUILD_DEPENDS on some TeX components so that NEWS.pdf is successfully
built.  Fix PLIST.  Bump PKGREVISION.
2011-12-11 18:41:47 +00:00
marino
b43d468779 math/pari: Fix for binutils 2.22
The ld linker from binutils 2.22 has --no-copy-dt-needed-entries enabled by
default, which is exactly opposite of earlier versions of the linker.
Previously ld would recursively search libraries linked in by the object's
primary libraries during symbol resolution.  Now linker wants all libraries
explicit requested, otherwise one gets a message such as this:

ld: <object file>: undefined reference to symbol '<symbol>'
ld: note: '<symbol>' is defined in DSO <shared library> so try adding it
    to the linker command line.

If this message is encountered, the two options are either to explicitly
add it to the linker command as suggested, or use the
--no-copy-dt-needed-entries switch to return the linker to its previous
behavior.  In the case of math/pari, libstdc++ was added to the library
list for the plotfltk.o object.  This explicit link is required by DragonFly
which is migrated to binutils 2.22 as its default version.
2011-12-10 23:53:34 +00:00
drochner
a03a684eb1 PKGREV bump for libXp-less openmotif 2011-12-09 14:36:32 +00:00
dholland
6c65b5d5c6 Not MAKE_JOBS_SAFE. 2011-12-09 01:21:15 +00:00
drochner
63cd55932f update to 4.47
changes:
-added API/options for Satisfiability problems
-minor bugfixes
2011-12-07 18:52:22 +00:00
joerg
9812439c77 Don't return without value in non-void function 2011-12-07 15:17:00 +00:00
joerg
9287c5f9fd Cairo support needs pkg-config 2011-12-07 10:18:23 +00:00
sbd
8eca42f859 Recursive bump for lang/ocaml buildlink addition. 2011-12-06 00:19:21 +00:00
joerg
801654788c Avoid picking up non-standard libm builtins with newer GCC 2011-12-05 22:51:00 +00:00
joerg
cb65ec27f9 Fix build with newer GCC 2011-12-05 22:50:25 +00:00
markd
0b6d2e3e99 s/fortran77/fortran/ as uses some features that f2c can't handle. 2011-12-04 18:42:02 +00:00
joerg
9a0666357e Tag the 28 locations that result in a Python 3.1 package as supporting so.
Remove it from the default list for the rest.
2011-12-03 00:02:14 +00:00
drochner
9eb6df105e add patch from upstream to fix signedness error in hash calculation
which can lead to an overwrite or segfault
bump PKGREV
2011-11-30 10:55:49 +00:00
drochner
d7de3f8f02 remove incomplete libtoolization which made that plugins were built
as executables rather than loadable modules
This might cause that the pkg doesn't build on as many platforms as
it did before, but it has a chance to work now.
bump PKGREV
2011-11-28 22:51:27 +00:00
hans
88e81eecd5 revision bump (PLIST change) 2011-11-25 23:47:16 +00:00
joerg
4fdcbdc11b Fix C++ 2011-11-25 22:04:43 +00:00
hans
c2f5c7366c add README, pointed out by joerg 2011-11-25 16:49:18 +00:00
joerg
015915c356 Fix build with modern GCC 2011-11-24 13:53:06 +00:00
joerg
7af45bd825 Fix build with newer GCC 2011-11-24 13:49:57 +00:00
minskim
1b46d80b6d Let py-numpy not run an invalid shell command.
This fixes PR 44130.
2011-11-22 20:56:13 +00:00
sbd
23c8ecae9a Recursive bump for math/cln buildlink addition. 2011-11-20 05:41:52 +00:00
sbd
f7dba9d78e Add missing devel/gmp buildlink.
Gmp is listed as a prerequisite in the INSTALL file.

Bump PKGREVISION
2011-11-20 05:40:27 +00:00
markd
a9532adc04 Update R-geoR to 1.6.36
Changes unknown other than builds with latest R.
2011-11-20 05:09:34 +00:00
markd
fdda07f8df Update R-sp to 0.9.91
Changes unknown other than builds with latest R.
2011-11-20 05:06:29 +00:00
markd
24cf197bb8 Needs c as well as fortran77 in USE_LANGUAGES 2011-11-20 05:00:51 +00:00
markd
2087cf1507 Update R to 2.14.0
changes to many to list - see NEWS file in distribution for details.
2011-11-20 04:57:02 +00:00
hiramatsu
2526aa0a31 Update p5-Spreadsheet-Read to 0.45.
Changes from previous;
0.45	Wed 07 Sep 2011

    - NAME / DISTNAME in Makefile.PL

0.44	Wed 07 Sep 2011

    - More cross-checks for META data
2011-11-17 07:57:24 +00:00
hiramatsu
1c1d0bda79 Add p5-Math-Random-MT-Auto. 2011-11-12 07:53:17 +00:00
hiramatsu
084574c624 Import Math::Random::MT::Auto into math/p5-Math-Random-MT-Auto.
Recent versions of devel/p5-Object-InsideOut optionally uses this
module.

This module provides pseudorandom number generators (PRNGs) that are
based on the Mersenne Twister algorithm.  There is a functional
interface to a standalone PRNG, and an OO interface (based on the
inside-out object model as implemented by the Object::InsideOut
module) for generating multiple PRNG objects.
2011-11-12 07:51:51 +00:00
hiramatsu
853f8d65fc Update p5-Number-Compare to 0.03.
Changes from previous;
0.03    21st September, 2011
        Generate a new tarball on linux.  Doing the C<make dist> on OSX
        generated a tarball that upset dumb tars
        tar: Ignoring unknown extended header keyword `SCHILY.dev'
        tar: Ignoring unknown extended header keyword `SCHILY.ino'
        tar: Ignoring unknown extended header keyword `SCHILY.nlink'

0.02    12th September, 2011
        - apply warning-related fix -
          https://rt.cpan.org/Public/Bug/Display.html?id=58466
2011-11-12 02:55:50 +00:00
hans
29d048ef75 not MAKE_JOBS_SAFE 2011-11-10 21:31:49 +00:00
mishka
b79fc4415f Update to R-combinat 0.0.8 - latest upstream release. 2011-11-06 22:24:45 +00:00
sbd
346e5fd1b8 Bump PKGREVISON for math/xylib buildlink additions. 2011-11-05 08:09:12 +00:00
sbd
65b4d16c3f Add missing zlib and bzip2 buildlinks
Bump PKGREVISION and Update BUILDLINK_ABI_DEPENDS.xylib
2011-11-05 08:07:12 +00:00
sbd
e93e5d65e3 Recursive bump for graphics/freetype2 buildlink addition. 2011-11-01 06:11:52 +00:00
sbd
04daa2f1b8 Recursive bump for graphics/freetype2 buildlink addition. 2011-11-01 06:00:33 +00:00
obache
7be9cc7045 This package has no contents to buildlink. 2011-10-31 11:59:02 +00:00
obache
e14aefd444 register egg-info.
Bump PKGREVISION.
2011-10-25 09:05:27 +00:00
obache
6b89f91811 register egg-info.
Bump PKGREVISION.
2011-10-25 08:53:50 +00:00
hiramatsu
a7ebaa3511 Add HOMEPAGE and LICENSE. 2011-10-17 09:27:48 +00:00
hiramatsu
09dde5670e Add HOMEPAGE and LICENSE. 2011-10-17 09:08:17 +00:00
hans
30004db2f5 Work around a bug in SunOS complex.h to make this build with Suns gcc. 2011-10-13 13:22:46 +00:00
dholland
10549b95d8 Not (or perhaps no longer) MAKE_JOBS_SAFE: in doc/, needs a .WAIT between
"conf.texi" and "subdirs", but I can't add one because this package uses
gmake and gmake has no equivalent functionality.
2011-10-12 05:27:40 +00:00
alnsn
ea99f0cc88 Revision dump after devel/hdf5 update. 2011-10-07 10:45:16 +00:00
obache
222013e774 + py-roman 2011-10-05 07:46:12 +00:00
obache
a462692c76 Import py-roman-1.4.0 as math/py-roman.
This Python module provides methods for converting Integer from/to Roman.
2011-10-05 07:43:12 +00:00
wiz
95b9aa8a1d Remove -Werror from flags to make this build. 2011-09-29 20:14:46 +00:00
ryoon
65a996b49a Add c to USE_LANGUAGES.
Fix build on Gentoo Linux.
2011-09-26 20:04:00 +00:00
ryoon
8483504800 Fix PR pkg/45404.
Add dependency to math/R-car.
  Fix build.
2011-09-26 19:36:54 +00:00
ryoon
526f825a1d Add R-car 2011-09-26 19:34:11 +00:00
ryoon
7d194cba2e Import R-car-2.0.11 as math/R-car
This package accompanies J. Fox and S. Weisberg, An R Companion to
Applied Regression, Second Edition, Sage, 2011.

Used by math/R-Rcmdr.
OKed by wiz@.
2011-09-26 19:33:02 +00:00
hans
cacdf6aa1e Fix build on SunOS. 2011-09-14 17:19:18 +00:00
hans
ce62caf50c Fix detection of builtin mpfr on SunOS. 2011-09-14 17:18:29 +00:00
hans
837223bd37 Explicitly depend on gmp>=4.3.2 and mpfr>=2.4.2. 2011-09-14 17:14:09 +00:00
hans
df67f4c60a Remove stupid test for Sun make from configure. 2011-09-14 17:12:18 +00:00
obache
7f5c8217b5 Fixes build with curl-7.21.7.
Let not to include deprecated header file.
2011-09-12 08:31:39 +00:00
drochner
fbbf6a3693 update to 1.0.14
changes:
-minor fixes
-documentation / translation improvements
2011-09-08 20:18:28 +00:00
drochner
cb2e813190 update to 0.10.17
changes:
-import/export improvements, mostly ODF
-misc fixes and improvements
2011-09-08 20:15:17 +00:00
obache
d7faaf9c78 Update ruby-spreadsheet to 0.6.5.9.
=== 0.6.5.9 / 7.9.2011

* Fixed a frozen string bug thanks to dblock (Daniel Doubrovkine),
2011-09-08 10:57:42 +00:00
cheusov
b514fde3be Add missing build tools "yacc" and "lex" 2011-09-05 20:20:27 +00:00
obache
485e33bae5 Update ruby-spreadsheet to 0.6.5.8.
=== 0.6.5.8 / 30.8.2011

* This patch is about adding a sheet_count method to workbook so that it returns
* the total no of worksheets for easy access. Please check. By
* tamizhgeek@gmail.com

        * https://gist.github.com/1180625
2011-08-31 13:34:38 +00:00
wiz
287f5a7bf2 Update to 3.0202:
3.0202      July 23, 2011
    - Moved tag-release.pl to scripts/tag-release.pl (though we now use
    Mercurial instead of Subversion.)
    - Add t/mode.t to test the ->mode() method.
    - Documented ->mode() better.
    - Optimized ->mode().

3.0201      October 14, 2010
    - Add some documentation clarifying the 0th percentile return, as it
    returns undef() for representing -inf:
        - Fix https://rt.cpan.org/Ticket/Display.html?id=62055
        - Thanks to Dave Breimann for reporting it.
    - Add the tag-release.pl to tag a release using Subversion.
2011-08-16 22:36:56 +00:00
wiz
2a423306f9 Update to 0.43a:
0.43	Tue 02 Aug 2011

    - Changed name in META.yml (RT#69574)

0.42	Wed 01 Jun 2011

    - Add --html output option to xlscat
    - Force CSV parser when in-sep is given
    - Prefer Data::Peek over Data::Dumper if available

0.41	Wed 06 Oct 2010

    - Spell-check
    - Fixed requiring optional modules (RT#61928 - Roderick Schupp)
2011-08-16 22:35:42 +00:00
wiz
06c600f1dc Update to 0.59. Add missing dependencies.
0.59 April 6 2011

    + Patch for decryption of default encrypted workbooks from
      Alexey Mazurin.

    ! Fix for invalid formatting of text cell that are numeric.
      http://rt.cpan.org/Public/Bug/Display.html?id=62073
2011-08-16 22:32:57 +00:00
wiz
b579198fb8 Update to 1.12:
1.12    2010-09-29      Abhijit Menon-Sen <ams@toroid.org>

    * Fix OS X build failure reported by Daniel Barker and fixed by
      Tokuhiro Matsuno.
2011-08-16 22:23:46 +00:00
wiz
eb7b7ab67a Update to 1.16:
2011-02-26 v1.16 pjacklam (6153 tests)
 * Change bigintpm.inc to reflect recent changes in the Math::BigInt
   distribution (Peter John Acklam).

2011-02-10 v1.15 pjacklam (6151 tests)
 * Include latest version of test scripts from Math-BigInt (closes RT #65580)
   (Peter John Acklam).
 * Add 00sig.t for testing SIGNATURE, and 01load.t for basic module loading and
   giving diagnostics useful for bug tracking (Peter John Acklam).
 * Rename pod.t to 02pod.t and pod_cov.t to 03podcov.t and use more generic
   code (Peter John Acklam).
 * Clean up whitespace (Peter John Acklam).
2011-08-16 22:22:56 +00:00
wiz
9b20d3ce36 Update to 1.36:
2011-02-26 v1.36 pjacklam (6362 tests)
  * Change bigintpm.inc to reflect recent changes in the Math::BigInt
    distribution (Peter John Acklam).
  * Use a _nok() function more similar to the one in Math::BigInt::Calc
    (Peter John Acklam).

2011-02-08 v1.35 pjacklam (6361 tests)
  * Rename files for testing signature, module loading, and POD so the names
    are within the 8+3 character limit (Peter John Acklam).
  * Rename method _nok_ok() to the correct _nok(). There ought to have been a
    test catching an error like that (Peter John Acklam).
  * Fix _nok() giving wrong output when second input argument is zero
    (Peter John Acklam).
  * Fix _nok() so it doesn't modify its second input arg (Peter John Acklam).
  * Update the included Devel::CheckLib to most recent version as suggested in
    RE #63055 (Peter John Acklam).
  * Apply "chmod 0644" to the few test scripts that don't already have that
    mode (Peter John Acklam).

2011-02-07 v1.34 pjacklam (6361 tests)
  * Rename _num() to _str(). The old _num() did exactly what _str() is supposed
    to do, according to the API documentation (Peter John Acklam).
  * Add a _num() function which (currently) simply numifies the output from
    _str() (Peter John Acklam).
  * Clean up whitespace (Peter John Acklam).
  * Fix POD errors (Peter John Acklam).
  * Add _nok() method. Now the old claim that Math::BigInt::GMP conforms to API
    version 2 is actually true (Peter John Acklam).
  * Edit the test files that were copied from the Math::BigInt distribution, so
    we now test Math::BigInt against Math::BigInt::GMP, not Math::BigInt::Calc.
    I had forgotten this when I copied the test files from the Math::BigInt
    distribution. This reduces the total test count, since some test are not
    executed with Math::BigInt::GMP (Peter John Acklam).
  * Replace morse code in 'README' with proper text (Peter John Acklam).
  * Include '01-load.t' for explicitly testing module loading (Peter John
    Acklam).
  * Use more generic code in 'pod.t' and 'pod_cov.t' (Peter John Acklam).

2011-01-30 v1.33 pjacklam (6411 tests)
  * Fix _modinv() so that it works the same way as _modinv() in other
    Math::BigInt libraries: The output arguments are an object and the
    corresponding sign, not undef (Peter John Acklam).
  * Include most recent versions of the test files from the Math-BigInt
    distribution (bigfltpm.inc, bigfltpm.t, bigintpm.inc, bigintpm.t,
    biglog.t, and bigroot.t) (Peter John Acklam).
  * Include generic SIGNATURE test file (Peter John Acklam).
  * Required version of Math::BigInt is now 1.99_05 (Peter John Acklam).
2011-08-16 22:21:45 +00:00
wiz
7374175678 Update to 1.8:
- 1.8.B59BrZX Mon May 9 11:53:35:33 2011
      * updated 'url' digit set to URLSafe to resolve
      HTTPS://RT.CPAN.Org/Ticket/Display.html?id=60125

      * updated license copyright years (already had GPLv3)
2011-08-16 22:18:34 +00:00
wiz
28762c471d Update to 0.09:
0.09  Mon Dec 06 2010
    - explicit use of of Math::BigInt to avoid confusing Devel::Cover

0.08  Mon Dec 06 2010
    - don't short-circuit encoding '0' so it gets proper padding.
2011-08-16 22:16:40 +00:00
wiz
4766bcbfba Update to 0.33:
0.33 Sun Feb 20 20:07:43 CET 2011
    Implemented the COMMENT argument
2011-08-16 22:15:42 +00:00
obache
bb3696f957 Revision bump after updating perl5 to 5.14.1. 2011-08-14 12:59:47 +00:00
adam
066fef127f Changes 2.08:
* Fix t/matlab.t failing on Windows (RT 64629)
* Applied patch from RT 51669 (POD rendering)
* Applied patch from RT 61334 (fix croak in new_from_string)
* Make reference check less strict in _new_from_row_or_cols (requested by MJD)

Changes 2.06:
* added submatrix() (exactly the same behavior as sec() from PDL, for 2D
  matrices)
* t/submatrix.t created
* t/decompose_LR.t created
* !!!NEED documentation for submatrix()
2011-08-06 20:53:17 +00:00
adam
4088193286 Changes 2.01080605:
* p5p in its infinite wisdom removed (automatically generated) defines for
  PERL_POLLUTE... Now every extension needs to add them back by hand...
2011-08-06 20:49:25 +00:00
adam
dfb8bf14b5 Match version with math/fftw. 2011-07-28 06:30:15 +00:00
adam
735801b11f Changes 3.3:
* Compiling OpenMP support (--enable-openmp) now installs a fftw3_omp library,
  instead of fftw3_threads, so that OpenMP and POSIX threads (--enable-threads)
  libraries can be built and installed at the same time.
* Various minor compilation fixes, corrections of manual typos, and
  improvements to the benchmark test program.
* Add support for the AVX extensions to x86 and x86-64. The AVX code works with
  16-byte alignment (as opposed to 32-byte alignment), so there is no ABI
  change compared to FFTW 3.2.2.
* Added Fortran 2003 interface, which should be usable on most modern Fortran
  compilers (e.g. gfortran) and provides type-checked access to the the C FFTW
  interface. (The legacy Fortran-77 interface is still included also.)
* Added MPI distributed-memory transforms. Compared to 3.3alpha, the major
  changes in the MPI transforms are:
* Fixed some deadlock and crashing bugs.
* Added Fortran 2003 interface.
* Added new-array execute functions for MPI plans.
* Eliminated use of large MPI tags, since Cray MPI requires tags < 224.
* Expanded documentation.
* make check now runs MPI tests
* Some ABI changes — not binary-compatible with 3.3alpha MPI.
* Add support for quad-precision __float128 in gcc 4.6 or later (on x86.
  x86-64, and Itanium). The new routines use the fftwq_ prefix.
* Temporarily removed MIPS paired-single support due to lack of available
  hardware for testing. We hope to add it back before the final FFTW 3.3
  release; meanwhile, users who want this functionality should continue using
  FFTW 3.2.x.
* Removed support for the Cell Broadband Engine. Cell users should use FFTW
  3.2.x.
* New convenience functions fftw_alloc_real and fftw_alloc_complex to use
  fftw_malloc for real and complex arrays without typecasts or sizeof.
2011-07-28 06:23:41 +00:00
obache
8692ff62cb recursive bump from gnome-vfs drop crypto dependency. 2011-07-21 13:05:46 +00:00
obache
0a7ffe4e2a Updated ruby-spreadsheet to 0.6.5.7.
=== 0.6.5.7 / 20.7.2011

* Fixed the bug introduced by Roel van der Hoorn and updated the test cases.

  * c79ab14dcf
2011-07-20 14:04:50 +00:00
obache
4c1f137e69 Update ruby-spreadsheet to 0.6.5.6.
=== 0.6.5.6 / 20.7.2011

* Added a fix from R. van der Hoorn to sanitize_worksheets if 'sheets' is empty.

  * c109f2ac54
2011-07-20 11:06:39 +00:00
drochner
e0f64fff72 in the awk code to extract the version number from a header, avoid
the non-standard "gensub" function, from Alexander Nasonov per PM
2011-07-14 18:06:59 +00:00
drochner
a6dbdce9d8 update to 1.10.16
changes:
-ODF import/export improvements
-Switch to using goffice's complex math
-more fixes and improvements
2011-07-12 19:17:48 +00:00
obache
bc0fa80d75 Update ruby-spreadsheet to 0.6.5.5.
=== 0.6.5.5 / 24.6.2011

* updated the color code for orange to 0x0034 => :orange, thanks to the hint of Jonty

  * https://gist.github.com/1044700
2011-07-11 11:21:09 +00:00
asau
f26474df73 Update to FriCAS 1.1.3
Changes:

- Added "jet bundle" framework  by Werner Seiler and Joachim Schue,
  which includes completion procedure and symmetry analysis for PDE.

- Better splitting of group representations (added Holt-Rees improvement
  to meatAxe).

- Added numeric versions of some elliptic integrals and few more elliptic
  functions.

- Speeded up FFCGP (finite fields via Zech logarithms).

- New experimental flag (off by default, set via setSimplifyDenomsFlag)
  which if on causes removal of irrationalities from denominators.
  Usually it causes slowdown, but on some examples gives huge speedup.
  It may go away in future (when no longer needed).

- Added experimental framework for theory of computations.

Bug fixes, in particular:

- Numerical solutions of polynomial systems have now required accuracy
  (SF 2418832).

- Fixed problem with crashes during tracing.

- Fixed a problem with nested iteration (SF 3016806).

- Eliminated stack overflow when concatenating long lists.
2011-07-08 10:18:21 +00:00
drochner
51be567cb1 allow to use gmp/mpfr/mpc which comes with the system (eg on
NetBSD-current with gcc45)
2011-07-08 09:40:57 +00:00
alnsn
9e4c881eeb Add missing LICENSE.
From README:

RPy2 is subject to the Mozilla Public License Version 1.1 (the
"License"); you may not use RPy2 except in compliance with the
License. You may obtain a copy of the License at
http://www.mozilla.org/MPL/ (or see the file MPL_LICENSE)

Software distributed under the License is distributed on an "AS IS"
basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See
the License for the specific language governing rights and
limitations under the License.

The Original Code is the RPy2 python package, itself subdivived
into subpackages and modules.

All code is Copyright of the respective author(s).
See the file AUTHORS for further details regarding authorship.

Alternatively, RPy2 may be used under the terms of either the GNU
General Public License Version 2 or later (the "GPL", see the file
GPL_LICENSE), or the GNU Lesser General Public License Version 2.1
or later (the "LGPL", see the file LGPL_LICENSE), in which case the
provisions of the GPL or the LGPL are applicable instead of those
above. If you wish to allow use of your version of this file only
under the terms of either the GPL or the LGPL, and not to allow
others to use your version of this file under the terms of the MPL,
indicate your decision by deleting the provisions above and replace
them with the notice and other provisions required by the GPL or the
LGPL. If you do not delete the provisions above, a recipient may use
your version of this file under the terms of any one of the MPL, the
GPL or the LGPL.
2011-06-29 21:18:08 +00:00
asau
0850b04b8a Update FriCAS to 1.1.2
Changes:

- Experimental Texmacs interface and Texmacs format output.
- Guessing package can now guess algebraic dependencies.
- Expansion into Taylor series and limits now work for most
  special functions.
- Spad to Aldor translator is removed.
- Spad compiler no longer allows to denote sets using braces.

Bug fixes, in particular:

- Fixed few cases where elementary integrals were returned
  unevaluated or produced wrong results.
- Unwanted numerical evaluation should be no longer a problem
  (FriCAS interpreter now very strongly prefers symbolic
  evaluation over numerical evaluation).
- Fixed a truncation bug in guessing package which causes loss
  of some correct solutions.
- TeX and MathML format should correctly put parentheses around
  and inside sums and products.
- Fixes few problems with handling of Unicode.
2011-06-22 06:36:37 +00:00
taca
d49d908ebc Update ruby-spreadsheet package to 0.6.5.4.
=== 0.6.5.4 / 18.4.2011

* Updated worksheet.rb according to the Patch of Bjªª¢ùrn Andersson.

  * https://gist.github.com/925007#file_test.patch
  * http://url.ba/09p9
2011-06-19 01:42:09 +00:00
dholland
7d76bbc17a CHECK_INTERPRETER_SKIP 2011-06-19 01:41:32 +00:00
alnsn
6ac6fc9d49 Add R-XML and R-bitops. 2011-06-14 21:31:31 +00:00
alnsn
c5d8c0f0ca Add XML R module, version 3.4-0. 2011-06-14 21:30:08 +00:00
alnsn
65963fe916 Add bitops R module, version 1.0-4.1. 2011-06-14 21:28:50 +00:00
drochner
2ace5f30ce update to 1.3.3
changes:
-UI improvements
-bugfixes
2011-06-09 17:01:39 +00:00
jnemeth
0d98767faf sort 2011-06-09 04:39:26 +00:00
cheusov
3d07d2b7a8 DESCR_SRC now contains full paths to DESCR files 2011-05-28 10:15:14 +00:00
cheusov
26fcd6911c add heirloom packages, oked by sponsors 2011-05-28 08:43:03 +00:00
cheusov
4c286aa06f heirloom part 2011-05-28 08:41:17 +00:00
cheusov
58d9484a77 heirloom part 2011-05-28 08:40:58 +00:00
drochner
9dabc6fb15 update to 1.10.15
changes:
-Import / export improvements
-Minor histogram improvements
-Add GSettings schemas
-bugfixes
2011-05-25 09:48:48 +00:00
drochner
ed109ad9b6 update to 1.3.2
This release fixes a bug on x86 when the scale factor of
scale_float(cl_LF, cl_I) exceeded 2^31. In addition, it improves
portability to non-GCC compilers.
2011-05-18 10:08:27 +00:00
alnsn
b0d3ddc6b1 Update math/R-CGIwithR to version 0.73-0.
Approved by wiz@.

Version 0.73-0

*  Identify the contents of file uploads with a class "FileUploadContent"

*  Don't collapse duplicate parameter values that correspond to file uploads
   in MultiPartFormData objects.

*  $ operator for MultiPartFormData extended to handle the case of multiple
   elements for the same parameter, specifically file uploads.

*  Added parameters to some functions to allow caller to specify content
   of the submitted form that is usually provide via environment variables or standard
   in.  This facilitates debugging.

Version 0.72-2

*  Deal  with repeated parameters.
2011-05-10 18:55:55 +00:00
taca
71a9ec8eae Reset PKGREVISION. 2011-05-10 11:24:56 +00:00
taca
949c4e159d Update ruby-rb-gsl package to 1.14.7.
* pkgsrc change: fix conflicts of some functions name with newer gsl.


Sat Feb 26 08:18:45 PST 2011
  * Ruby/GSL 1.14.7
    * Fix conversion of non-DFLOAT NArray to GSL::Vector and
      GSL::Vector::Complex.

Thu Feb 24 10:27:08 PST 2011
  * Ruby/GSL 1.14.6
    * Add Vector::Complex support to NArray conversions
    * Raise exception when trying to create View from NArray object of
      incompatible type.
2011-05-10 11:23:48 +00:00
asau
0b4128107a Update Maxima to version 5.24.0
Maxima 5.24 change log

New items in core:
 * function defstruct: documentation

New items in share:
 * package lapack: function dgemm (matrix multiplication)
 * package fractals: documentation
 * package finance: documentation

Other changes:
 * elliptic functions: bug fixes
 * integration: apply trigonometric identities for some special cases
 * improve TeX output for conditional expressions
 * more work on German translation of reference manual
 * regularize error messages and prepare for translation
 * remove unused functions and variables
 * XMaxima user interface: bug fixes and improvements
 * package draw: bug fixes, pngcairo output
 * package noninteractive: bug fixes
 * package clebsch_gordan: new version
 * package graphs: updates
 * package ezunits: updates

Bug fixes:

3211937  wrong sign for integral of e^(-1/x^2)
3199708  integrate(sin(2x)atan(sin(x)),x)
3198530  Apparently wrong limit with factorial
3181353  Documentation of "at" misleading
3165872  integrate(abs(sin(x)),x,0,2*%pi) wrong result
3158526  integrate(x^2*exp(x)/(1+exp(x))^2,x , minf, inf);
3154534  need local declaration in antid.mac
3154351  abs_integrate --> errors from apply
3153533  incorrect integration
3153506  typo in antid / FIX
3153170  abs_integrate + composisiton of unit step
3153169  abs_integrate of unit step
3138054  bfloat problem / FIX
3133916  scanmap(minfactorial,a!) infinite loop
3131324  simplification of sqrt
3067098  The command timer for a Lisp function
2808179  maxima.el inferior-maxima-complete on Emacs 23
1285104  trigsimp and trigreduce & square roots
 917283  Comment syntax confused
  unnumbered: lisp (gcl?) being unable to read 1.79769d308
  unnumbered: draw2d(explicit(321.4567,x,0,1)) causing hang
  unnumbered: plotting functions by name
  unnumbered: asinh and atanh are increasing odd functions
  unnumbered: bad interaction of rassociative and tellsimp


Maxima 5.23 change log

Backwards-incompatible changes:
 * package draw: changed names of some options:
     file_bgcolor --> background_color
     pic_width, pic_height, eps_width, eps_height, pdf_width, pdf_height --> dimensions
     rot_horizontal, rot_vertical --> view

New items in core:
 * function bf_find_root: bigfloat version of find_root
 * function find_root: recognize keyword arguments

New items in share:
 * package cobyla: import Fortran COBYLA (constrained optimization)
 * package draw: new graphic objects 'errors' and 'region'

Other revisions:
 * further work on exponential integrals
 * further work on abs and signum identities
 * further work on special cases in integration
 * translation of reference manual to German (ongoing)
 * clean-up in code related to processing files
 * general code clean-up
 * package ezunits: additional built-in conversions

Bug fixes:

3114834  maxima-help does not find help topics
3111568  subsequent calls to gradef hide variable dependencies
3102421  noninteractive-mode and kill(all)
3101075  limit bug
3093408  Bug in simplify_sum
3085498  integration error (partial solution)
3081820  lbfgs causes error
3080397  laplace(unit_step(-t),t,s) generates an error
3079975  rectform(atan2(y,0)) -> division by zero
3073827  integrate(t*cos(a*t^2 + b*t + c), t, 0, 1) => division by 0
3072490  contrib diag.mac variable scope
3071208  rtest15--limit to inf from above
3067311  eivects doesn't load eigen automatically
3064709  domain error for tan
3062883  diff does not recognize indirect dependencies in expressions
3060669  filename_merge with more than two arguments
3060166  und documentation is incorrect
3058324  $save must bind *print-circle* to NIL
3058290  tan(%pi*integer) simplification
3055427  conjugate solver
3045559  integrate(exp(-u^2), u, minf, x) => incorrect gamma_incomple
3041267  jacobi_cs(x,1) returns a wrong expression
3041196  carg(exp(x+%i*y)) -> y not correct
3040667  logarc(acosh(z)) needlessly complicated
3039452  integrate(sqrt(t^c)/(t*(b*t^c+a)),t) hangs
3038883  In general exp(z)^a --> exp(z*a) not correct
3034415  integrate(1/abs(x),x) using abs_integrate
3024924  list_matrix_entries
3020589  xlabel and ylabel don't change plot3d axis labels
3020243  defint(exp(cos(x))*cos(sin(x)),x,0,2*%pi) wrong result 0
2997443  ic2 fails
2970792  gradef(s) together with vect package
2881021  ic2 and bc2 may return incorrect results (solution suggeste)
2796194  error doing a Fourier transform.
2727846  tan(%pi/2) is not correct (or just not nice?)
2555641  no doc for subnumsimp
2541376  antidiff bug
2171237  load(basic) warnings
2123651  min and max of imaginary and real numbers
1993208  cartesian_product incorrect on empyt argument list
1990099  wrong integer_partitions(0)
1892341  taylor message about something assumed to be 0 in integral
1890128  no user doc for cauchy_matrix
1839088  ic2 fails with division by 0
1789213  ic1 for solution containing indefinite integral
1439559  function burn is broken
1213621  reveal with matrix argument
1149719  ratvarswitch not documented
1045920  a>1 and b>1, is a+b>2?
 875089  defint(f(x)=g(x),x,0,1) -> false = false
 767338  Evaluation of array names
 703789  save() doesn't return a pathname
(unnumbered)  integrate(cos(2*x)*cos(x),x) is wrong.
2011-05-09 22:32:40 +00:00
asau
fd643aa082 Update MCSim to version 5.4.0
Changes are unknown, changelog is unavailable.
2011-05-09 20:59:10 +00:00
dbj
ff3c29d401 include bsd.prefs.mk before consulting MACHINE_ARCH so it picks up manually set ABI 2011-05-09 03:12:07 +00:00
asau
fbc7b30007 Update MPFR to version 3.0.1 patch level 3.
Patch 3 fixes the following bug:

  The mpfr_atan function calls mpfr_check_range on the unrounded
  result (no longer allocated) instead of the rounded result.
  Consequence of this bug: possible incorrect or invalid result and/or
  incorrect flags if the unrounded result or rounded result is not in
  the current exponent range. Or possibly worse if the memory used by
  the unrounded result is modified before the return of the function.
  This bug has been present since MPFR 2.1.0 (exceptions were not
  supported before).


Patch 2 fixes the following bug:

  The mpfr_rec_sqrt function can have undefined behavior due to the
  call of mpn_add_1 or mpn_sub_1 (from GMP) with a null size, which is
  not allowed. The fourth argument of mpn_add_1 or mpn_sub_1 (i.e. the
  value that should have been added or subtracted) is here also 0, so
  that the consequences are limited. In practice, with the current GMP
  version, this yields a small buffer overflow (1 limb, i.e. 32 bits
  or 64 bits), as shown by valgrind, with the possible consequences:
  a crash, or memory corruption (very unlikely) if another process or
  thread modifies the limb at the same time (as in this context, the
  value is first read then written back by GMP). This bug has always
  been present since the introduction of the mpfr_rec_sqrt function
  in MPFR 2.4.0.


Patch 1 fixes the following bug:

  If the exponent range has been reduced such that emax = 1 or 2,
  mpfr_asin may give an incorrect result on +1 and -1.

which should probably never occur in practical codes.
2011-05-08 21:06:51 +00:00
asau
6a28b54b93 Update GSL to version 1.15
New in gsl-1.15:

** Added Tuomo Keskitalo's new ode branch ode-initval2 with a
   gsl_odeiv2 prefix. This provides proper support for implicit
   solvers.  It is intended to be the new default for differential
   equations.  The existing gsl_odeiv routines will be retained for
   binary compatibility but their interface will be deprecated.

** Added new gsl_integrate_cquad routines for robust integration of
   difficult functions using the doubly-adaptive CQUAD algorithm
   (Pedro Gonnet).

** Added error checking to CBLAS functions (Jose Luis Garcia Pallero)

** Added a new function gsl_integration_glfixed_point to return
   ordered Gauss-Legendre points and weights contained within a
   gsl_integration_glfixed_table [bug #32237].

** Added a new function gsl_interp_type_min_size to return the size of
   an interpolation type.

** Added a function gsl_pow_uint(x,n) to compute x^n for unsigned
   exponents (needed when n exceeds the range of signed integers).

** Added new routine gsl_linalg_complex_cholesky_invert to handle the
   matrix inversion for complex Cholesky decompositions (Huan Wu).

** Added the functions gsl_vector_equal(x,y) and gsl_matrix_equal(x,y)
   for testing equality of two vectors or matrices.

** Added function gsl_eigen_nonsymmv_params to control the balancing
   transformation for eigenvector calculations. Balancing is now
   turned off by default for gsl_eigen_nonsymmv.

** It is now possible to choose an alternative cblas library via
   pkg-config using the GSL_CBLAS_LIB environment variable or
   the pkg-config --define-variable option.

** The jacobi method gsl_eigen_jacobi now uses the norm of the
   off-diagonal elements for its convergence criterion, as in
   algorithm 8.4.3 of Golub and van Loan.

** The newton multiroot solvers now return an error when a singular
   jacobian is detected.

** The interpolation functions now return NaN and when x is out of range,
   instead of extrapolating.

** The gsl_multimin_fdfsolver multidimensional minimisers now return
   GSL_ENOPROG immediately if the generated trial point does not
   differ from the initial point (to machine precision), avoiding
   unnecessary further iterations.

** Extended the range of gsl_sf_bessel_lnKnu_e by rescaling
   intermediate results to avoid internal overflows [bug #31528].

** Improved the result of gsl_sf_atanint_e for large arguments by
   adding the first order 1/x correction term. [bug #29562]

** Fixed the gsl_rng_ranlxs generators to enforce a maximum seed value
   of 2^31-1.  Larger seed values caused out of range values to be
   returned.

** Fixed gsl_ran_chisq_pdf(x,nu) to return correct result of 1/2
   instead of 0 when x=0 and nu=2, and +inf when x=0 and nu<2.

** Fixed gsl_pow_int(x,n) to avoid an infinite loop when n=INT_MIN due
   to wrapping of signed integers.

** Fixed gsl_sf_hyperg_2F1(a,b,c,x) to avoid returning NaN for
   arguments |a|>10. [bug #24812]

** Avoid spurious underflow return code in gsl_sf_beta_inc_e when
   intermediate underflow does not affect the result. [bug #30933]

** Avoid segfault in Chebyshev series derivatives gsl_cheb_calc_deriv
   for n=1. [bug #29139]
2011-05-08 20:35:25 +00:00
wiz
a9386e15ed Add buildlink3.mk file. 2011-05-08 11:52:40 +00:00
alnsn
2ea2a2cb37 Add LIBnn=lib to ./configure environment. This fixes a build failure on 64bit linux.
Briefly discussed with wiz@
2011-05-06 19:42:48 +00:00
asau
3da1b30204 Update Mathomatic to version 15.6.0.
Changes in Mathomatic version 15.6.0:
------------------------------------

Many tweaks and corrections to simplification and polynomial operations were made.

Created m4 Mathomatic input file "tests/trig".  Lists all trig and
hypertrig functions, allowing testing of their simplification
and manipulation.

Sped up polynomial operations to be another 30 times faster
in some cases.  Finished and cleaned up the polynomial factoring
and division C code.  Thanks again to Kingsley G. Morse Jr. for
showing me this needed to be done.

The "simplify quick" command was changed to not combine unlike
denominators, making it much more useful, doing better
simplification than any other simplify option sometimes.

The tally command now returns the ending total and sets it as the
current equation.

Fixed an old bug just discovered today where expressions like
(x - y)*(x^99 - y^99) were being factored into something huge
with the simplify and fraction commands, which are the only
commands that do polynomial factoring.

Improved coloring scheme: all prompt and normal text is now the
terminal emulator's default color for text (usually uncolored).
Expressions remain colored if color mode is enabled.  Thanks to
Carl U. Grayser for the good idea.

Improved the fraction command by factoring polynomials first.
Specifying the "numerator" and "denominator" options together
will make the fraction command return with failure if the result
is not a fraction, otherwise the entire fraction is returned.


Changes in Mathomatic version 15.5.3:
------------------------------------

Simplify expressions with positive bases like 16^(x/2) and (2^m)^n by default;
previously only simplified these with the "simplify symbolic" command.

The exit status of Mathomatic now shows any errors when run with the
-e option.  So if a command fails, it exits to the OS with the exit
status 1.  Exit status is 0 if everything went OK.  Also works without
the -e option, when files are specified on the shell command line.
An error will abort the script, returning you to the operating system
with an exit status of 1.

Changed makefile to allow installing m4 Mathomatic without installing
the documentation.  Use "sudo make bininstall matho-rmath-install" to
install m4 Mathomatic executables and man pages.
Then "sudo make docinstall" installs all documentation.

The rmath man page math function and constant lists have been corrected
and the rmath man page has been added to the main user documentation.

Output of universal constants is now prettier when displaying.  No
more i#, e#, and pi#, they are displayed as they are entered: i, e,
and pi.  HTML mode displays the small Greek letter pi for pi.

The nintegrate command now works with complex numbers and trigonometry,
and does not change the current equation to the result.

Link the man page rmath.1 to matho.1 when installing, so that every
executable has a man page.

Added "numerator" and "denominator" options to the fraction command,
which returns only the numerator or denominator after making sure the
expression is a simple algebraic fraction.

Autocalc now deletes only the previous autocalc when autocalc is used.
It was deleting all autocalc results except for the current one every
time, preventing copying.

Improved simplification of expressions like (x + (2^(1/2)))^{3,4,5,6}.
It broke a while back when factor_times() constant factoring was
improved.  The fix uses factor_times() less, preserving reduced surds.

Saving "plot_prefix" with the "set save" command was not escaping
semicolons, so they were disappearing from the prefix.  Fixed now.


Changes in Mathomatic version 15.5.2:
------------------------------------

Renamed the "factorial" directory to "examples".

Fixed entering negative odd roots like (-32)^(1/3) to not approximate,
instead simplifying to -2*4^(1/3).  So all surds are preserved, now.

Added man pages for the Mathomatic Symbolic Math Library functions.
Allow building a PDF book of all Mathomatic man pages.

Simplify command simplification sped up even more, by putting algebraic
fraction reduction in the right place and not overusing it.
Responsiveness has greatly improved for large expressions.  Thanks go
to Kingsley G. Morse Jr. for help with this and for filing a bug report.

The simplify command functionality was improved.  It was fixed to
not mess up with unwanted fractional coefficients.


Changes in Mathomatic version 15.5.1:
------------------------------------

Many minor cleanups and corrections were made.

Renamed Mathomatic User's Manual to Official Mathomatic User Guide.

Calculate command now outputs fewer newlines.  Not so much blank space.

Allow equation-number-ranges on the plot command line.  For example,
"plot all" works now, to plot all stored equations and expressions
at once, for easy comparison.


Changes in Mathomatic version 15.5.0:
------------------------------------

Fixed result of (constant % inf) to equal constant.

Restored explicitly linking with ncurses library when compiled
with readline, because Red Hat Linux wrongly requires this.
There is no way to know ahead of time whether this is needed, so
remove the "-lncurses" from the makefile if there is a problem
linking.

Upgraded set option "fractions_display_mode" to display fractions
as mixed fractions when possible, when set to mode 2.  A mixed
fraction is possible when the numerator of a simple fraction is
greater than the denominator, like 9/4, which displays as (2+(1/4))
in mixed fraction display mode 2.  Mode 1 is the default, which
functions as before, displaying 2.25 as the simple fraction 9/4.
To display mixed fractions only on command, just type "display mixed"
to display the current expression with mixed fractions output
that one time.

Autocalc (used when typing a numerical only expression at the main
prompt) now keeps the result until next time autocalc is used,
so that it can be acted on further by Mathomatic commands, if desired.
All previous autocalc results are erased every time autocalc is used.
This provides much better calculator functionality for Mathomatic
and improves ease-of-use.

Use HTML infinity symbol (&infin;) for infinities in HTML output mode.

Allow solid fraction bar display in HTML output mode by using "&ndash;".
Previously the ASCII dash character "-" was used, making a dashed line
that separated the numerator and denominator of fractions.  Now the line
should be solid in HTML output mode.

Improved divide command for numerical division.  Added mixed fractions
and cleaned up output.

Ported matho-primes to MS-Windows and included it in the Windows
version on my website: "http://mathomatic.org/winam2.zip".

The fraction command is now repeatable by preceding it with "repeat".
This repeatedly runs it until the smallest expression is achieved.

Simplification was sped up, especially with "simplify quick", therefore
differentiating and the Taylor command are faster.

Removed the requirement for the Unix "time" command with m4 Mathomatic.

Allow array variable refs like a[2] or a[1][2] when generating C code.
Just "set special []" to allow straight brackets in variable names.

Another ease-of-use enhancement was implemented, making it possible to
use "#equation-number" anywhere in any expression, it will insert the
expression at that equation number.  This is an improvement that should
have been done long ago.  However, don't expect it to work with the
plot command, "plot #1" does not work because the argument to plot is a
string and/or the current equation.  For example, typing things like
"y=#1^2" is a convenient way to raise the expression in equation space
number 1 to the power of 2 and set it equal to y, or whatever you wish.


Changes in Mathomatic version 15.4.4:
------------------------------------

Many minor but obnoxious bugs were fixed.

Fixed result of constant modulo 0 (e.g. 9 % 0) and infinity modulo
constant (e.g. inf % 9) to be NaN.

Disabled shelling out and the edit command only in m4 Mathomatic.
The terminal hung when shelling out or editing with an m4 front-end.
Plotting still works and pagination is working now for m4 Mathomatic.

Cleaned up tests/quartic.in, it now works without m4 Mathomatic, and is
a single formula to solve most fourth degree polynomial equations.

Created a nice man page for rmath and matho (rmath.1).


Changes in Mathomatic version 15.4.3:
------------------------------------

Fixed negate priority to be the same as TIMES/DIVIDE like Maxima (yay!).
So now entering -x^2 is meaningful.  Previously negate was the highest
priority (high precedence) operator.  Entering -2^2 now results in -4
instead of 4, as in most other mathematics programs (except for pure
calculators like bc).

Flush standard output before reading a line of input from the user
when not using readline, so that the MinGW version works with mintty.

Added a new "for" command, for plugging in sequential values into a
variable in the current expression and displaying the results.
The syntax is the same as the sum and product commands.


Changes in Mathomatic version 15.4.1:
------------------------------------

Upgraded the plot command towards always giving gnuplot a proper plot command,
no matter what the user input is.  The plot command now automatically renames the
variable in a single variable expression to the x variable, so plotting
will always succeed.

Removed Python script "misc/mp"; Couldn't get mpmath to work properly for
all input.

Improved results of the fraction command.

Now saving readline history in $HOME/mathomatic_history when compiled for CygWin.
Now additionally searching for "mathomatic.rc" in $HOME when compiled for CygWin.

Ported matho-pascal and matho-primes to double floats if USE_DOUBLES is defined,
for systems that don't support long double floats.


Changes in Mathomatic version 15.4.0:
------------------------------------

Added "compare approximate" command option, use of which is more likely to
result in a successful comparison.  Runs the approximate command on
both expressions before comparing, if needed.

The variables command syntax was upgraded to be the same as the code command.

Added code to delete identities in the optimize command.  When identical
equations were optimized, identities would result.  These are now removed.

Fixed incorrect syntax in the menu files in menu directory.

Added "tests/quartic.in".  At last, a working set of equations for calculating
the four solutions of any quartic equation, similar to "tests/cubic.in".

Fixed parser routine to give a helpful error message when a cursor or function key
string is encountered.  Escape, carriage return, and form-feed are ignored now.


Changes in Mathomatic version 15.3.7:
------------------------------------

Fixed the modulus operator (%) to always evaluate to an integer when
both arguments are integer.
7921%14 was giving 11.000000000001, now gives exactly 11.

Equation number ranges for commands may include unallocated equation
spaces now, allowing entry of any reasonable range.


Changes in Mathomatic version 15.3.6:
------------------------------------

Many minor fixes for consistency and helpfulness were made.

Cleaned up "factor numbers" command for consistency in operation and to
work as documented.

Warn when substituting a non-integer expression into an integer variable.

Added m4/degrees.m4, this can be read into rmath with "rmath degrees.m4"
to use degree units instead of radians for trig functions.
"sudo make m4install-degrees" installs degree mode as the default for
matho and rmath by appending m4/degrees.m4 to m4/functions.m4.

Allow input of #equation-number as the LHS or RHS of any equation.  It is
replaced with the expression or RHS at the specified equation-number.
Note that #equation-number is also the current equation selector, so entering
it as the LHS at the main prompt will function differently.

Simplify (integer % 1) and the like to 0.  Generalized to instantly simplify
to 0 the following: (integer_expression % +/-unit_fraction).


Changes in Mathomatic version 15.3.4:
------------------------------------

Fixed an error reporting bug in the solve command.
There was the possibility of spewed space characters with improper input.

Added code so that solving for 0^2 or variable^2 will properly square both
sides of an equation.  Solving for variable^2 will isolate the square root of
the largest expression containing that variable, and then square both sides of
the equation.  Works for any power and variable with any equation with roots.


Changes in Mathomatic version 15.3.3:
------------------------------------

Fixed -e option to be more like entering what follows into the main prompt;
That is, the autosolve option is left on and errors do not abort.

"set finance" option now groups output with thousands' grouping characters
if the locale information indicates any.  For example: 2,000,000.00


Changes in Mathomatic version 15.3.2:
------------------------------------

Added "help options" command which lists invocation options (like -h).

Entering "nan" now gives a warning, instead of an error,
so that expressions containing NaN can be read back in without aborting.

Added "-c count" option to matho-primes, optionally limiting the number
of lines of primes that are output to "count" lines.

Fixed an old, important bug in the Mathomatic solve routine, where solve was
failing on some easy to solve equations indeterminately, because of
incorrect infinite loop detection code.  Solving should work perfectly now.
This problem was discovered today with the input: "a=a+b" "a" "b".


Changes in Mathomatic version 15.3.1:
------------------------------------

Improved the help command, allowing multiple help topics on the help
command line.

Improved upon "misc/roots.c", the automatic polynomial root finder.

Increased the maximum number of equation spaces from 100 to 200.
They do not consume memory unless they are used.

Solving things like 0=(x+1)^15+x for x exited the solve routine without grace.
This problem is now fixed for all solve requests that aborted with error.

When using the symbolic math library, the display command now outputs
all specified equation spaces in fraction format and returns the last
equation space listed as a result.
Before it was just a crippled list command with a little simplification
that didn't output anything.


Changes in Mathomatic version 15.3.0:
------------------------------------

Changed -u option to also echo line input, so that m4 Mathomatic is easier to use.

X-Windows icon for the Mathomatic entry within desktop menu systems.

The repeat command can now be shortened to 4 characters, like any other command.

Capitalized E, I, and PI are now no longer parsed as universal constants.
Entering E, I, or PI will now result in the general variables E, I, and PI,
unless "set no case" is previously entered.
This change undoes version 15.2.0 Mathematica compatibility, due to kind user feedback.
Entering e, i, or pi still gives the universal constants e#, i#, and pi#.

Removed "set negate_highest_precedence" option.
This was done for compatibility and so that less parentheses are displayed
within expressions.  Polynomials should display very nicely now, powers
like "x^2", "y^3", and "x^y" are not parenthesized unless need be.

Added "list hexadecimal" command option, which displays expressions
exactly as stored internally in hexadecimal.  No precision is lost,
this is because the floating point values are not converted to decimal.

Error reporting was improved.


Changes in Mathomatic version 15.2.2:
------------------------------------

Added "set plot_prefix" option, which allows custom plot functionality.


Changes in Mathomatic version 15.2.1:
------------------------------------

Added the -e option, which processes mathematical expressions and Mathomatic commands
instead of input files on the shell command line.

Improved results of solving for zero.  Results should have reduced integer coefficients,
by factoring out the GCD of rational coefficients.
2011-04-30 23:28:56 +00:00
obache
1d9df3258a recursive bump from gettext-lib shlib bump. 2011-04-22 13:41:54 +00:00
hans
7e4842c310 Fix linking against pari. 2011-04-20 22:23:57 +00:00
hans
31c9ce221c Add package for pari module of lang/clisp. Remove conflicting option
pari from lang/clisp.
2011-04-20 18:44:56 +00:00
roy
f878c3d0ab Just replace what we need. 2011-04-19 15:32:28 +00:00
roy
97001228d4 Use python correctly. 2011-04-19 13:14:28 +00:00
obache
436b4cfc69 fix a typo. 2011-04-13 13:21:29 +00:00
obache
c49a95b0ef + ruby-spreadsheet 2011-04-13 13:17:59 +00:00