Commit graph

200126 commits

Author SHA1 Message Date
adam
32af0d4475 GLPK 4.49 (release date: Apr 16, 2013)
The new API routine glp_mincost_relax4, which is a driver to
        relaxation method of Bertsekas and Tseng (RELAX-IV), was added
        to the package. RELAX-IV is a code for solving minimum cost
        flow problems. On large instances it is 100-1000 times faster
        than the standard primal simplex method. Prof. Bertsekas, the
        author of the original RELAX-IV Fortran code, kindly permitted
        to include a C translation of his code in GLPK under GPLv3.

        A bug (wrong dual feasibility test) was fixed in API routine
        glp_warm_up. Thanks to David T. Price <dtprice@speakeasy.net>
        for bug report.

        Obsolete API routine lpx_check_kkt was replaced by new routine
        glp_check_kkt.

        IMPORTANT: All old API routines whose names begin with 'lpx_'
        were removed from API level and NO MORE AVAILABLE.
2013-04-16 14:15:14 +00:00
wiz
9c92d0adc6 regen 2013-04-16 13:56:04 +00:00
wiz
cfe9ff9671 Explain when buildlink3.mk files need to be included in other buildlink3.mk
files. Requested by rodent.
2013-04-16 13:55:33 +00:00
obache
5a1bd01b93 Updated converters/skf to 1.99.3 2013-04-16 11:26:46 +00:00
obache
521e09838d Update skf to 1.99.3.
skf (1.99.3) Thu, 11 Apr 2013 20:14:07 +0900

  * fix skfoFILE definition
  * fix ruby 2.0.0 header file inclusion
  * fix unexpected non-registered codeset name use
2013-04-16 11:22:29 +00:00
adam
d892944e4b Use CPPFLAGS in configure script: needed on Mac OS X to make use of -isysroot 2013-04-16 10:49:31 +00:00
adam
a80cdba186 Updated math/isl to 0.11.2 2013-04-16 06:48:10 +00:00
adam
109a47bfba Changes 0.11.2:
* make code generation output the same on Solaris
* fix some hard to trigger bugs
2013-04-16 06:47:15 +00:00
gdt
ceec6fd7bd Updated geography/viking to 1.4.1 2013-04-16 01:09:03 +00:00
gdt
4656f87ca2 Update to 1.4.1.
pkgsrc changes: improve patch comment and explain why it is not
filed/applied upstream.

Viking 1.4.1.0 (2013-04-08)
Bug Fix Release + updated translations
* Import Launchpad translation updates [Mainly for large Czech update]
* Fix using .vik files with 'unusual' track or waypoint names
* Fix waypoint selection when the waypoint has an image but the images are not being displayed.
* Fix showing map timestamps on Windows on the map tile info dialog.
* SF#3608411: Part 2 - Avoid creating command window on Viking start-up.
* SF#3608411: Part 1 - Avoid warning about unbuffer on Windows Systems.
* SF#3608264: Improve Statusbar Location Info Maybe Truncated
* Prevent inputting empty names for layers and sublayers via the layers panel.
* SF#3608311: Fix crash caused by renaming blank sublayer names
* Be less strigent in loading Geotagged images without optional GPS tags
* Fix use of scaled tile image when tile image not present.
* Enable updating the treeview to allow setting a blank waypoint symbol.
* Improve the Waypoint tooltip to display the description if there is no comment.
* Fix datasource acquiring waypoints from geotag images.
* Updated geo-* scripts to version released on 2013/02/18
* Fix compilation with --enable-geocaches option.
* help/Makefile.am: explicitly list figures.

Viking 1.4 (2013-02-11)
New features since 1.3.2
* Support for GPX Route type including transfer to/from GPS Devices.
** Replaced 'Add Track' tool with 'Create Route' tool. (NB There still is the Create Track tool)
* Support for GPX 'Description' for tracks, waypoints and routes.
* Add ability to Acquire My OSM Traces and ability to choose any subset of the available traces.
* GPS Upload from a track.
* Enable giving a track a specific colour (drawn in default draw by track mode).
* Enable drawing all tracks in a specific colour (no longer is Black the only option).
* Allow option of drawing a direction arrow when drawing a track.
* Allow configuration of trackpoint size and direction arrow size.
* Display Waypoint Icons in the layers panel treeview.
* Restored Route Finding via Google Services. [Was disabled in 1.3.2 due to change in formats supported]
* Only display sublayer container when there are sublayers.
* Display map tile source and cached file information in a dialog for a position.
* Quick zoom level change from the statusbar by clicking on the zoom level to select another level.
* In the Zoom Tool mode: can select an area to zoom in on (via holding shift key + drag mouse).
* Mouse Zooming in/out maintains the position focus on the mouse pointer location.
** (Use the keys Ctrl+Shift and mouse zoom to maintain the centered map location).
* Improvements in Acquiring Wikipedia Points (allow more points, sortable columns, URL and feature type).
* Allow opening a URL on a waypoint which has a URL for a comment or description.
* Re-organized TrackWaypoint Layer menus to group functionality together better with New, View, Combine, Split, Delete, Acquire and Upload submenus.
* Gradient Graph view on the Track Properties.
* Allow same named TrackWaypoint sublayer items. i.e. can now have 2 (or more) waypoints with the same name.
* Add support of a Map type for a local On Disk OSM Tile Format.
* Revised Draw Track by Speed mode with a simple traffic light colouring scheme to represent slow/average/fast speeds.
* Enable deletion of track points with the same timestamp.
* Ability to merge segments of a track.
* Allow generation of large pixel sized images.
* Rework image generation to ask for file name first and then only allow supported map zoom levels.
* Allow control of waypoint text size on the viewport display.
* Allow control of GPX file saving track order (either Alphabetical or By Time via global preference).
* Keyboard shortcuts to create layers and enable some tools.
* Show the bearing and the step distance of the next point when creating a track or route.
* Improved feedback in reading erroneous files.
* Improved Help Manual.
* More translation texts including a Finnish version.
* Scripts to support the creation of the Windows Executable Installer.
* Add a python tool to convert the Viking tile cache into a MapBox MBTiles format file.
* Many internal improvements.

Fixes since 1.3.2
* Don't accidently overwrite GPX and KML files in the Viking file type.
* Use the default desktop font for waypoint viewport display text.
* Ensure when opening multiple .vik files they are each loaded into a new window.
* Show UTM location in statusbar when in UTM mode.
* Fix: crash when dealing with non-compressed DEM files
2013-04-16 01:08:46 +00:00
prlw1
7f997e2286 Updated graphics/png to 1.6.2beta01 2013-04-15 22:34:01 +00:00
prlw1
b874a3e907 Update png to 1.6.2beta01
Version 1.6.2beta01 [April 14, 2013]
  Updated documentation of 1.5.x to 1.6.x changes in iCCP chunk handling.
  Fixed incorrect warning of excess deflate data. End condition - the
    warning would be produced if the end of the deflate stream wasn't read
    in the last row.  The warning is harmless.
  Corrected the test on user transform changes on read. It was in the
    png_set of the transform function, but that doesn't matter unless the
    transform function changes the rowbuf size, and that is only valid if
    transform_info is called.
  Corrected a misplaced closing bracket in contrib/libtests/pngvalid.c
    (Flavio Medeiros).
  Corrected length written to uncompressed iTXt chunks (Samuli Suominen).
2013-04-15 22:33:41 +00:00
abs
8429dd7a1e Support MYSQL_VERSION_DEFAULT=56 2013-04-15 22:31:22 +00:00
adam
b326d0b78a Updated devel/bison to 2.7.1; parallel/hwloc to 1.7; parallel/mpi-ch to 3.0.3 2013-04-15 21:43:35 +00:00
adam
cbf1db4643 Changes 3.0.3:
A new stable release of MPICH, 3.0.3, is now available for download. This release adds several performance features for MPI-RMA and fixes several bugs present in 3.0.2. Please use this release instead of 3.0.2.
2013-04-15 21:40:17 +00:00
wiz
0f6428c644 Fix packaging on non-Linux: lirc needs to be in PLIST_VARS, always. 2013-04-15 20:57:56 +00:00
adam
29f454726d Version 1.7.0
-------------
* New operating system backends
  + Add BlueGene/Q compute node kernel (CNK) support. See the FAQ in the
    documentation for details. Thanks to Jeff Hammond, Christopher Samuel
    and Erik Schnetter for their help.
  + Add NetBSD support, thanks to Aleksej Saushev.
* New I/O device discovery
  + Add co-processor OS devices such as "mic0" for Intel Xeon Phi (MIC)
    on Linux. Thanks to Jerome Vienne for helping.
  + Add co-processor OS devices such as "cuda0" for NVIDIA CUDA-capable GPUs.
  + Add co-processor OS devices such as "opencl0d0" for OpenCL GPU devices
    on the AMD OpenCL implementation.
  + Add GPU OS devices such as ":0.0" for NVIDIA X11 displays.
  + Add GPU OS devices such as "nvml0" for NVIDIA GPUs.
    Thanks to Marwan Abdellah and Stefan Eilemann for helping.
  These new OS devices have some string info attributes such as CoProcType,
  GPUModel, etc. to better identify them.
  See the I/O Devices and Attributes documentation sections for details.
* New components
  + Add the "opencl", "cuda", "nvml" and "gl" components for I/O device
    discovery.
  + "nvml" also improves the discovery of NVIDIA GPU PCIe link speed.
  All of these new components may be built as plugins. They may also be
  disabled entirely by passing --disable-opencl/cuda/nvml/gl to configure.
  See the I/O Devices, Components and Plugins, and FAQ documentation
  sections for details.
* API
  + Add hwloc_topology_get_flags().
  + Add hwloc/plugins.h for building external plugins.
    See the Adding new discovery components and plugins section.
* Interoperability
  + Add hwloc/opencl.h, hwloc/nvml.h, hwloc/gl.h and hwloc/intel-mic.h
    to retrieve the locality of OS devices that correspond to AMD OpenCL
    GPU devices or indexes, to NVML devices or indexes, to NVIDIA X11
    displays, or to Intel Xeon Phi (MIC) device indexes.
  + Add new helpers in hwloc/cuda.h and hwloc/cudart.h to convert
    between CUDA devices or indexes and hwloc OS devices.
  + Add hwloc_ibv_get_device_osdev() and clarify the requirements
    of the OpenFabrics Verbs helpers in hwloc/openfabrics-verbs.h.
* Tools
  + hwloc-info is not only a synonym of lstopo -s anymore, it also
    dumps information about objects given on the command-line.
* Documentation
  + Add a section "Existing components and plugins".
  + Add a list of common OS devices in section "Software devices".
  + Add a new FAQ entry "Why is lstopo slow?" about lstopo slowness
    issues because of GPUs.
  + Clarify the documentation of inline helpers in hwloc/myriexpress.h
    and hwloc/openfabrics-verbs.h.
* Misc
  + Improve cache detection on AIX.
  + The HWLOC_COMPONENTS variable now excludes the components whose
    names are prefixed with '-'.
  + lstopo --ignore PU now works when displaying the topology in
    graphical and textual mode (not when exporting to XML).
  + The `libpci' component is now called `pci' but the old name is still
    accepted in the HWLOC_COMPONENTS variable for backward compatibility.
2013-04-15 20:46:16 +00:00
gls
cec0c42843 Updated databases/pgbuildfarm to 4.10 2013-04-15 19:44:21 +00:00
gls
134b0002e5 Update databases/pgbuildfarm to 4.10
From maintainer Nicolas Thauvin via mail to pkgsrc-users.

There are two notable upstream changes :
- the tarball is now hosted on pgbuildfarm.org instead of pgfoundry
- the client has now support for modules allowing to control the build
2013-04-15 19:43:11 +00:00
adam
6d152b1f3c Changes 2.7.1:
* Bug fixes
  * Fix compiler attribute portability (yacc.c)
    With locations enabled, __attribute__ was used unprotected.
  * Fix some compiler warnings (lalr1.cc)
2013-04-15 19:19:09 +00:00
schmonz
25d2586836 Added fonts/ubuntu-fonts version 0.80 2013-04-15 17:29:13 +00:00
uwe
7b1004e199 Add ubuntu-fonts 2013-04-15 17:23:57 +00:00
uwe
2cdcf68ed4 Ubuntu Font Family 0.80
A set of matching new libre/open fonts.  The typeface is sans-serif,
uses OpenType features and is manually hinted for clarity on desktop
and mobile computing screens.
2013-04-15 17:22:40 +00:00
adam
862219baf3 Updated databases/sqlite3 to 3.7.16.2 2013-04-15 15:42:53 +00:00
manu
a324f123a3 Add SASL PLAIN Support. Patch submitted upstream
http://sourceforge.net/tracker/?func=detail&aid=3610674&group_id=311&atid=300311
2013-04-15 15:41:55 +00:00
manu
4227de7cdb Updated www/ap2-auth-mellon to 0.6.1 [manu 2013-04-15] 2013-04-15 15:35:56 +00:00
manu
585b346121 Upgrade ap2-auth-mellon to 0.6.1 plus a patch from upstream
Changes since 0.4.0, from NEWS file:

* Add MellonSPentityId to control entityId in autogenerated metadata

Version 0.6.1
---------------------------------------------------------------------------

* Fix the POST replay functionality when multiple users logging in
  at once.

* Add a fallback for the case where the POST replay data has expired
  before the user logs in.

Version 0.6.0
---------------------------------------------------------------------------

Backwards-incompatible changes:

* The POST replay functionality has been disabled by default, and the
  automatic creation of the MellonPostDirectory target directory has been
  removed. If you want to use the POST replay functionality, take a
  look at the README file for instructions for how to enable this.

* Start discovery service when accessing the login endpoint. We used
  to bypass the discovery service in this case, and just pick the first
  IdP. This has been changed to send a request to the discovery service
  instead, if one is configured.

* The MellonLockFile default path has been changed to:
    /var/run/mod_auth_mellon.lock
  This only affects platforms where a lock file is required and
  where Apache doesn't have write access to that directory during
  startup. (Apache can normally create files in that directory
  during startup.)

Other changes:

* Fix support for SOAP logout.

* Local logout when IdP does not support SAML 2.0 Single Logout.

* MellonDoNotVerifyLogoutSignature option to disable logout signature
  validation.

* Support for relative file paths in configuration.

* The debian build-directory has been removed from the repository.

* Various cleanups and bugfixes:

  * Fix cookie parsing header parsing for some HTTP libraries.

  * Fix inheritance of MellonAuthnContextClassRef option.

  * Use ap_set_content_type() instead of accessing request->content_type.

  * README indentation cleanups.

  * Support for even older versions of GLib.

  * Fixes for error handling during session initialization.

  * Directly link with GLib rather than relying on the Lasso library
    linking to it for us.

  * Some code cleanups.

Version 0.5.0
---------------------------------------------------------------------------

* Honour MellonProbeDiscoveryIdP order when sending probes.

* MellonAuthnContextClassRef configuration directive, to limit
  authentication to specific authentication methods.

* Support for the HTTP-POST binding when sending authentication
  requests to the IdP.

* MellonSubjectConfirmationDataAddressCheck option to disable received
  address checking.

* Various cleanups and bugfixes:

  * Support for older versions of GLib and APR.

  * Send the correct SP entityID to the discovery service.

  * Do not set response headers twice.

  * Several cleanups in the code that starts authentication.
2013-04-15 15:35:01 +00:00
adam
8e8c750f39 Changes 3.7.16.2:
Fix a bug (present since version 3.7.13) that could result in database corruption on windows if two or more processes try to access the same database file at the same time and immediately after third process crashed in the middle of committing to that same file.
2013-04-15 15:33:46 +00:00
mef
71814d5462 Correct typo, diable-libjpeg-turbo -> disable-libjpeg-turbo. 2013-04-15 15:21:26 +00:00
obache
c4dbb62e8c substitute hard-coded compiler rpath flag with ${COMPILER_RPATH_FLAG}.
PR pkg/47404.
2013-04-15 13:31:28 +00:00
obache
790a38f52c + p5-Term-ReadLine-TTYtter 2013-04-15 13:12:05 +00:00
obache
fe298a5943 Added devel/p5-Term-ReadLine-TTYtter version 1.4 2013-04-15 13:10:38 +00:00
obache
68bb9356e4 Import p5-Term-ReadLine-TTYtter-1.4 as devel/p5-Term-ReadLine-TTYtter.
Based on PR pkg/47446 by Dennis Lindroos.

Term::ReadLine::TTYtter is a modified version of T::RL::Perl with
several new nonstandard features specific to TTYtter, but may be useful for
other applications.

It also allows UTF-8 characters to be entered without crashing, and adds a
counter so you can see how many characters you've entered (which is a big
deal for Twitter and other microblogging platforms).

For information about TTYtter, a Twitter-client written in Perl, visit
http://www.floodgap.com/software/ttytter.
2013-04-15 13:09:54 +00:00
wiz
13908ef23d Fix typo. 2013-04-15 13:05:14 +00:00
obache
c4884fe0e0 Update perl5 related items:
* PERL5_PACKLIST is list of relative paths
* update perl5 installation directory related variables, inspired by
  PR pkg/47724.
2013-04-15 12:54:45 +00:00
rodent
62014bfc34 +courier-0.71 +courier-imap-4.13 +sqwebmail-5.6.1 +maildrop-2.6.0 2013-04-15 04:04:33 +00:00
cheusov
cd38953c5d Add option "lirc" and enable it by default when available, tested on RHEL-6 2013-04-14 22:10:23 +00:00
wiz
7a1f38271d Updated multimedia/farsight2 to 0.0.31 2013-04-14 19:51:13 +00:00
wiz
2538cbd1a6 Update to 0.0.31.
Lots of bug fixes since 0.0.26.
2013-04-14 19:51:04 +00:00
joerg
ae4bd2b63f Updated biology/py-mol to 1.5.0.1 2013-04-14 19:49:17 +00:00
joerg
f75964f6ec Update to pymol 1.5.0.1:
- bug fixes
- improvements to performance and render quality
2013-04-14 19:48:56 +00:00
joerg
96d9121b23 Deal with the /usr/bin/env changes in REPLACE_INTERPRETER. 2013-04-14 19:46:50 +00:00
joerg
5ddbb76811 Don't blindly force -O4, LTO may not be supported. 2013-04-14 19:46:23 +00:00
joerg
991bb73651 Always return a value from a non-void function (hi christos!). 2013-04-14 19:45:30 +00:00
joerg
bd3e03f395 Deal with the vexing parse issue. 2013-04-14 19:44:54 +00:00
joerg
fdaea6d61d Drop patch that breaks build with modern libtool. 2013-04-14 19:43:20 +00:00
dholland
ed06a60994 Minor tidyup to error reporting. (This has been sitting in one of my trees
for a year and a half and I don't remember the context.) ok'd by joerg
2013-04-14 17:03:30 +00:00
wiz
3b8bfebf73 Updated www/curl to 7.30.0 2013-04-14 16:39:57 +00:00
wiz
7ccf40dd6c Update to 7.30.0:
Fixed in 7.30.0 - April 12 2013
Release contains security-related bug fix

Changes:

    imap: Changed response tag generation to be completely unique
    imap: Added support for SASL-IR extension
    imap: Added support for the list command
    imap: Added support for the append command
    imap: Added custom request parsing
    imap: Added support to the fetch command for UID and SECTION properties
    imap: Added parsing and verification of the UIDVALIDITY mailbox attribute
    darwinssl: Make certificate errors less techy
    imap/pop3/smtp: Added support for the STARTTLS capability
    checksrc: ban use of sprintf, vsprintf, strcat, strncat and gets
    curl_global_init() now accepts the CURL_GLOBAL_ACK_EINTR flag
    Added CURLMOPT_MAX_HOST_CONNECTIONS, CURLMOPT_MAX_TOTAL_CONNECTIONS for new multi interface connection handling
    Added CURLMOPT_MAX_PIPELINE_LENGTH, CURLMOPT_CONTENT_LENGTH_PENALTY_SIZE, CURLMOPT_CHUNK_LENGTH_PENALTY_SIZE, CURLMOPT_PIPELINING_SITE_BL and CURLMOPT_PIPELI NING_SERVER_BL for new pipelining control

Bugfixes:

    SECURITY ADVISORY: cookie tailmatching to avoid cross-domain leakage
    darwinssl: Fix build under Leopard
    DONE: consider callback-aborted transfers premature
    ntlm: Fixed memory leaks
    smtp: Fixed an issue when processing EHLO failure responses
    pop3: Fixed incorrect return value from pop3_endofresp()
    pop3: Fixed SASL authentication capability detection
    pop3: Fixed blocking SSL connect when connecting via POP3S
    imap: Fixed memory leak when performing multiple selects
    nss: fix misplaced code enabling non-blocking socket mode
    AddFormData: prevent only directories from being posted
    darwinssl: fix infinite loop if server disconnected abruptly
    metalink: fix improbable crash parsing metalink filename
    show proper host name on failed resolve
    MacOSX-Framework: Make script work in Xcode 4.0 and later
    strlcat: remove function
    darwinssl: Fix send glitchiness with data > 32 or so KB
    polarssl: better 1.1.x and 1.2.x support
    various documentation improvements
    multi: NULL pointer reference when closing an unused multi handle
    SOCKS: fix socks proxy when noproxy matched
    install-sh: updated to support multiple source files as arguments
    PolarSSL: added human readable error strings
    resolver_error: remove wrong error message output
    docs: updates HTML index and general improvements
    curlbuild.h.dist: enhance non-configure GCC ABI detection logic
    sasl: Fixed null pointer reference when decoding empty digest challenge
    easy: do not ignore poll() failures other than EINTR
    darwinssl: disable ECC ciphers under Mountain Lion by default
    CONNECT: count received headers
    build: fixes for VMS
    CONNECT: clear 'rewindaftersend' on success
    HTTP proxy: insert slash in URL if missing
    hiperfifo: updated to use current libevent API
    getinmemory.c: abort the transfer nicely if not enough memory
    improved win32 memorytracking
    corrected proxy header response headers count
    FTP quote operations on re-used connection
    tcpkeepalive on win32
    tcpkeepalive on Mac OS X
    easy: acknowledge the CURLOPT_MAXCONNECTS option properly
    easy interface: restore default MAXCONNECTS to 5
    win32: don't set SO_SNDBUF for windows vista or later versions
    HTTP: made cookie sort function more deterministic
    winssl: Fixed memory leak if connection was not successful
    FTP: wait on both connections during active STOR state
    connect: treat a failed local bind of an interface as a non-fatal error
    darwinssl: disable insecure ciphers by default
    FTP: handle "rubbish" in front of directory name in 257 responses
    mk-ca-bundle: Fixed lost OpenSSL output with "-t"
2013-04-14 16:39:48 +00:00
wiz
25c9bf4283 libltdl update done. 2013-04-14 16:08:15 +00:00