3.6.0.0:
- Add support of sending parent process death signal.
- Previous fix for handling timeouts caused a problem in warm shutdowns due
to use of deepcopy.
We now use a shallow copy of the cache and do so only when it is needed.
- Cleanup old checks and workarounds for Python versions we no longer support.
Version 1.11.12
* Fix a corner case of hwloc_topology_restrict() where children would
become out-of-order.
* Fix the return length of export_xmlbuffer() functions to always
include the ending \0.
Version 1.11.11
* Add support for Hygon Dhyana processors in the x86 backend,
thanks to Pu Wen for the patch.
* Fix symbol renaming to also rename internal components,
thanks to Evan Ramos for the patch.
* Fix build on HP-UX, thanks to Richard Lloyd for reporting the issues.
* Detect PCI link speed without being root on Linux >= 4.13.
Patch from Eric A. Borisch via pull request.
ClosesNetBSD/pkgsrc#38.
Remove patches no longer needed; migrate to configure option for rpath.
===============================================================================
Changes in 3.2.1
===============================================================================
# Fixes for platforms with strict memory alignment requirements.
# Fixes for MPI_Win info management.
# Fixed a progress bug with MPI generalized requests.
# Fixed multiple integer overflow bugs in CH3 and ROMIO.
# Improved detection for Fortran 2008 binding support.
# Enhanced support for libfabric (OFI) netmod.
# Several other minor bug fixes, memory leak fixes, and code cleanup.
A full list of changes is available at the following link:
http://git.mpich.org/mpich.git/shortlog/v3.2..v3.2.1
Version 1.11.10 (also included in 2.0.1)
---------------
* Fix detection of cores and hyperthreads on Mac OS X.
* Serialize pciaccess discovery to fix concurrent topology loads in
multiple threads.
* Fix first touch area memory binding on Linux when thread memory
binding is different.
* Some minor fixes to memory binding.
* Fix hwloc-dump-hwdata to only process SMBIOS information that correspond
to the KNL and KNM configuration.
* Add a heuristic for guessing KNL/KNM memory and cluster modes when
hwloc-dump-hwdata could not run as root earlier.
* Fix discovery of NVMe OS devices on Linux >= 4.0.
* Add get_area_memlocation() on Windows.
* Add CPUVendor, Model, ... attributes on Mac OS X.
Version 1.11.9
--------------
* Add support for Zhaoxin ZX-C and ZX-D processors in the x86 backend,
thanks to Jeff Zhao for the patch.
* Fix AMD Epyc 24-core L3 cache locality in the x86 backend.
* Don't crash in the x86 backend when the CPUID vendor string is unknown.
* Fix the missing pu discovery support bit on some OS.
* Fix the management of the lstopoStyle info attribute for custom colors.
* Add verbose warnings when failing to load hwloc v2.0+ XMLs.
Version 1.11.8
--------------
* Multiple Solaris improvements, thanks to Maureen Chew for the help:
+ Detect caches on Sparc.
+ Properly detect allowed/disallowed PUs and NUMA nodes with processor sets.
+ Add hwloc_get_last_cpu_location() support for the current thread.
* Add support for CUDA compute capability 7.0 and fix support for 6.[12].
* Tools improvements
+ Fix search for objects by physical index in command-line tools.
+ Add missing "cpubind:get_thisthread_last_cpu_location" in the output
of hwloc-info --support.
+ Add --pid and --name to specify target processes in hwloc-ps.
+ Display thread names in lstopo and hwloc-ps on Linux.
* Doc improvements
+ Add a FAQ entry about building on Windows.
+ Install missing sub-manpage for hwloc_obj_add_info() and
hwloc_obj_get_info_by_name().
Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.
paexec:
- add new option -0. It works just like in "xargs -0".
- add new option -J.
- add new option -mw=.
- fix help message display by -h.
- -md= now allows no delimiter mode in -g mode.
- -c and -C override each other if one is implied after another.
Add new tool "paargs". It is a wrapper over paexec(1) that
simplifies use of paexec.
Fix transport_broken_rnd test script.
This fixes regression test on Solaris.
Update man page for paexec(1).
SLURM is an open-source resource manager designed for Linux clusters of
all sizes. It provides three key functions. First it allocates exclusive
and/or non-exclusive access to resources (computer nodes) to users for some
duration of time so they can perform work. Second, it provides a framework
for starting, executing, and monitoring work (typically a parallel job) on
a set of allocated nodes. Finally, it arbitrates contention for resources
by managing a queue of pending work.
Renamed from parallel/slurm.
OK wiz@
Changes since 2.6.4:
Adds additional capabilities such as SQL accounting and job profiling
Change maintainer to bacon@NetBSD.org
Install example Linux init scripts
The actual fix as been done by "pkglint -F */*/buildlink3.mk", and was
reviewed manually.
There are some .include lines that still are indented with zero spaces
although the surrounding .if is indented. This is existing practice.
1.10.7:
- Fix bug in TCP BTL that impacted performance on 10GbE (and faster)
networks by not adjusting the TCP send/recv buffer sizes and using
system default values
- Add missing MPI_AINT_ADD and MPI_AINT_DIFF function delcarations in
mpif.h
- Fixed time reported by MPI_WTIME; it was previously reported as
dependent upon the CPU frequency.
- Fix platform detection on FreeBSD
- Fix a bug in the handling of MPI_TYPE_CREATE_DARRAY in
MPI_(R)(GET_)ACCUMULATE
- Fix openib memory registration limit calculation
- Add missing MPI_T_PVAR_SESSION_NULL in mpi.h
- Fix "make distcheck" when using external hwloc and/or libevent packages
- Add latest ConnectX-5 vendor part id to OpenIB device params
- Fix race condition in the UCX PML
- Fix signal handling for rsh launcher
- Fix Fortran compilation errors by removing MPI_SIZEOF in the Fortran
interfaces when the compiler does not support it
- Fixes for the pre-ignore-TKR "mpi" Fortran module implementation
(i.e., for older Fortran compilers -- these problems did not exist
in the "mpi" module implementation for modern Fortran compilers):
- Add PMPI_* interfaces
- Fix typo in MPI_FILE_WRITE_AT_ALL_BEGIN interface name
- Fix typo in MPI_FILE_READ_ORDERED_BEGIN interface name
- Fixed the type of MPI_DISPLACEMENT_CURRENT in all Fortran interfaces
to be an INTEGER(KIND=MPI_OFFSET_KIND).
- Fixed typos in MPI_INFO_GET_* man pages. Thanks to Nicolas Joly for
the patch
- Fix typo bugs in wrapper compiler script
Unsorted entries in PLIST files have generated a pkglint warning for at
least 12 years. Somewhat more recently, pkglint has learned to sort
PLIST files automatically. Since pkglint 5.4.23, the sorting is only
done in obvious, simple cases. These have been applied by running:
pkglint -Cnone,PLIST -Wnone,plist-sort -r -F
This has been a pkglint warning for several years now, and pkglint can even
fix it automatically. And it did for this commit.
Only in lang/mercury, two passes of autofixing were necessary because there
were nested variables.
- Adds Process._authkey alias to .authkey for 2.7 compat.
- Remove superfluous else clause from max_memory_per_child_check.
- Document and test all supported Python versions.
- Extend 'Process' to be compatible with < Py3.5.
- Use a properly initialized logger in pool.py error logging.
- _trywaitkill can now kill a whole process group if the worker process declares itself as a group leader.
- Fix cpython issue 14881 (See http://bugs.python.org/issue14881).
- Fix for a crash on windows.
- Fix messaging in case of worker exceeds max memory.
* Added support for MPI-3.1 features including nonblocking collective I/O,
address manipulation routines, thread-safety for MPI initialization,
pre-init functionality, and new MPI_T routines to look up variables
by name.
* Fortran 2008 bindings are enabled by default and fully supported.
* Added support for the Mellanox MXM InfiniBand interface. (thanks
to Mellanox for the code contribution).
* Added support for the Mellanox HCOLL interface for collectives.
(thanks to Mellanox for the code contribution).
* Significant stability improvements to the MPICH/portals4
implementation.
* Completely revamped RMA infrastructure including several
scalability improvements, performance improvements, and bug fixes.
* Added experimental support for Open Fabrics Interfaces (OFI) version 1.0.0.
https://github.com/ofiwg/libfabric (thanks to Intel for code contribution)
* The Myrinet MX network module, which had a life cyle from 1.1 till
3.1.2, has now been deleted.
* Several other minor bug fixes, memory leak fixes, and code cleanup.
--------------
* Fix hwloc-bind --membind for CPU-less NUMA nodes (again).
Thanks to Gilles Gouaillardet for reporting the issue.
* Fix a memory leak on IBM S/390 platforms running Linux.
* Fix a memory leak when forcing the x86 backend first on amd64/topoext
platforms running Linux.
* Command-line tools now support "hbm" instead "numanode" for filtering
only high-bandwidth memory nodes when selecting locations.
+ hwloc-bind also support --hbm and --no-hbm for filtering only or
no HBM nodes.
* Add --children and --descendants to hwloc-info for listing object
children or object descendants of a specific type.
* Add --no-index, --index, --no-attrs, --attrs to disable/enable display
of index numbers or attributes in the graphical lstopo output.
* Try to gather hwloc-dump-hwdata output from all possible locations
in hwloc-gather-topology.
* Updates to the documentation of locations in hwloc(7) and
command-line tools manpages.
- max_memory_per_child was measured in kilobytes on Linux, but bytes on
*BSD/MacOS, it's now always kilobytes.
- Windows: Adds support for max_memory_per_child, but requires the
``psutil`` package to be installed.
- Fixed bug in ForkingPickler.loadbuf, where it tried to pass
a BytesIO instance directly to ``pickle.loads`` on Python 2.7.
MASTER_SITES= site1 \
site2
style continuation lines to be simple repeated
MASTER_SITES+= site1
MASTER_SITES+= site2
lines. As previewed on tech-pkg. With thanks to rillig for fixing pkglint
accordingly.
Prompted by Nicolas Joly in private mail.
1.10.4 - 01 Sept 2016
------
- Fix assembler support for MIPS
- Improve memory handling for temp buffers in collectives
- Fix [all]reduce with non-zero lower bound datatypes
Thanks Hristo Iliev for the report
- Fix non-standard ddt handling. Thanks Yuki Matsumoto for the report
- Various libnbc fixes. Thanks Yuki Matsumoto for the report
- Fix typos in request RMA bindings for Fortran. Thanks to @alazzaro
and @vondele for the assist
- Various bug fixes and enhancements to collective support
- Fix predefined types mapping in hcoll
- Revive the coll/sync component to resolve unexpected message issues
during tight loops across collectives
- Fix typo in wrapper compiler for Fortran static builds
1.10.3 - 15 June 2016
------
- Fix zero-length datatypes. Thanks to Wei-keng Liao for reporting
the issue.
- Minor manpage cleanups
- Implement atomic support in OSHMEM/UCX
- Fix support of MPI_COMBINER_RESIZED. Thanks to James Ramsey
for the report
- Fix computation of #cpus when --use-hwthread-cpus is used
- Add entry points for Allgatherv, iAllgatherv, Reduce, and iReduce
for the HCOLL library
- Fix an HCOLL integration bug that could signal completion of request
while still being worked
- Fix computation of cores when SMT is enabled. Thanks to Ben Menadue
for the report
- Various USNIC fixes
- Create a datafile in the per-proc directory in order to make it
unique per communicator. Thanks to Peter Wind for the report
- Fix zero-size malloc in one-sided pt-to-pt code. Thanks to Lisandro
Dalcin for the report
- Fix MPI_Get_address when passed MPI_BOTTOM to not return an error.
Thanks to Lisandro Dalcin for the report
- Fix MPI_TYPE_SET_ATTR with NULL value. Thanks to Lisandro Dalcin for
the report
- Fix various Fortran08 binding issues
- Fix memchecker no-data case. Thanks to Clinton Stimpson for the report
- Fix CUDA support under OS-X
- Fix various OFI/MTL integration issues
- Add MPI_T man pages
- Fix one-sided pt-to-pt issue by preventing communication from happening
before a target enters a fence, even in the no-precede case
- Fix a bug that disabled Totalview for MPMD use-case
- Correctly support MPI_UNWEIGHTED in topo-graph-neighbors. Thanks to
Jun Kudo for the report
- Fix singleton operations under SLURM when PMI2 is enabled
- Do not use MPI_IN_PLACE in neighborhood collectives for non-blocking
collectives (libnbc). Thanks to Jun Kudo for the report
- Silence autogen deprecation warnings for newer versions of Perl
- Do not return MPI_ERR_PENDING from collectives
- Use type int* for MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, and MPI_WIN_MODEL.
Thanks to Alastair McKinstry for the report
- Fix register_datarep stub function in IO/OMPIO. Thanks to Eric
Chamberland for the report
- Fix a bus error on MPI_WIN_[POST,START] in the shared memory one-sided component
- Add several missing MPI_WIN_FLAVOR constants to the Fortran support
- Enable connecting processes from different subnets using the openib BTL
- Fix bug in basic/barrier algorithm in OSHMEM
- Correct process binding for the --map-by node case
- Include support for subnet-to-subnet routing over InfiniBand networks
- Fix usnic resource check
- AUTHORS: Fix an errant reference to Subversion IDs
- Fix affinity for MPMD jobs running under LSF
- Fix many Fortran binding bugs
- Fix `MPI_IN_PLACE`-related bugs
- Fix PSM/PSM2 support for singleton operations
- Ensure MPI transports continue to progress during RTE barriers
- Update HWLOC to 1.9.1 end-of-series
- Fix a bug in the Java command line parser when the
-Djava.library.path options was given by the user
- Update the MTL/OFI provider selection behavior
- Add support for clock_gettime on Linux.
- Correctly detect and configure for Solaris Studio 12.5
beta compilers
- Correctly compute #slots when -host is used for MPMD case
- Fix a bug in the hcoll collectives due to an uninitialized field
- Do not set a binding policy when oversubscribing a node
- Fix hang in intercommunicator operations when oversubscribed
- Speed up process termination during MPI_Abort
- Disable backtrace support by default in the PSM/PSM2 libraries to
prevent unintentional conflicting behavior.
1.10.2: 26 Jan 2016
-------------------
**********************************************************************
* OSHMEM is now 1.2 compliant
**********************************************************************
- Fix NBC_Copy for legitimate zero-size messages
- Fix multiple bugs in OSHMEM
- Correctly handle mpirun --host <user>@<ip-address>
- Centralize two MCA params to avoid duplication between OMPI and
OSHMEM layers: opal_abort_delay and opal_abort_print_stack
- Add support for Fujitsu compilers
- Add UCX support for OMPI and OSHMEM
- Correctly handle oversubscription when not given directives
to permit it. Thanks to @ammore1 for reporting it
- Fix rpm spec file to not include the /usr directory
- Add Intel HFI1 default parameters for the openib BTL
- Resolve symbol conflicts in the PSM2 library
- Add ability to empty the rgpusm cache when full if requested
- Fix another libtool bug when -L requires a space between it
and the path. Thanks to Eric Schnetter for the patch.
- Add support for OSHMEM v1.2 APIs
- Improve efficiency of oshmem_preconnect_all algorithm
- Fix bug in buffered sends support
- Fix double free in edge case of mpirun. Thanks to @jsharpe for
the patch
- Multiple one-sided support fixes
- Fix integer overflow in the tuned "reduce" collective when
using buffers larger than INT_MAX in size
- Fix parse of user environment variables in mpirun. Thanks to
Stefano Garzarella for the patch
- Performance improvements in PSM2 support
- Fix NBS iBarrier for inter-communicators
- Fix bug in vader BTL during finalize
- Improved configure support for Fortran compilers
- Fix rank_file mapper to support default --slot-set. Thanks
to Matt Thompson for reporting it
- Update MPI_Testsome man page. Thanks to Eric Schnetter for
the suggestion
- Fix missing resize of the returned type for subarray and
darray types. Thanks to Keith Bennett and Dan Garmann for
reporting it
- Fix Java support on OSX 10.11. Thanks to Alexander Daryin
for reporting the problem
- Fix some compilation issues on Solaris 11.2. Thanks to
Paul Hargrove for his continued help in such areas
Version 1.11.4
--------------
* Add MemoryMode and ClusterMode attributes in the Machine object on KNL.
Add doc/examples/get-knl-modes.c for an example of retrieving them.
Thanks to Grzegorz Andrejczuk.
* Fix Linux build with -m32 with respect to libudev.
Thanks to Paul Hargrove for reporting the issue.
* Fix build with Visual Studio 2015, thanks to Eloi Gaudry for reporting
the issue and providing the patch.
* Don't forget to display OS device children in the graphical lstopo.
* Fix a memory leak on Solaris, thanks to Bryon Gloden for the patch.
* Properly handle realloc() failures, thanks to Bryon Gloden for reporting
the issue.
* Fix lstopo crash in ascii/fig/windows outputs when some objects have a
lstopoStyle info attribute.
Version 1.11.3
--------------
* Bug fixes
+ Fix a memory leak on Linux S/390 hosts with books.
+ Fix /proc/mounts parsing on Linux by using mntent.h.
Thanks to Nathan Hjelm for reporting the issue.
+ Fix a x86 infinite loop on VMware due to the x2APIC feature being
advertised without actually being fully supported.
Thanks to Jianjun Wen for reporting the problem and testing the patch.
+ Fix the return value of hwloc_alloc() on mmap() failure.
Thanks to Hugo Brunie for reporting the issue.
+ Fix the return value of command-line tools in some error cases.
+ Do not break individual thread bindings during x86 backend discovery in a
multithreaded process. Thanks to Farouk Mansouri for the report.
+ Fix hwloc-bind --membind for CPU-less NUMA nodes.
+ Fix some corner cases in the XML export/import of application userdata.
* API Improvements
+ Add HWLOC_MEMBIND_BYNODESET flag so that membind() functions accept
either cpusets or nodesets.
+ Add hwloc_get_area_memlocation() to check where pages are actually
allocated. Only implemented on Linux for now.
- There's no _nodeset() variant, but the new flag HWLOC_MEMBIND_BYNODESET
is supported.
+ Make hwloc_obj_type_sscanf() parse back everything that may be outputted
by hwloc_obj_type_snprintf().
* Detection Improvements
+ Allow the x86 backend to add missing cache levels, so that it completes
what the Solaris backend lacks.
Thanks to Ryan Zezeski for reporting the issue.
+ Do not filter-out FibreChannel PCI adapters by default anymore.
Thanks to Matt Muggeridge for the report.
+ Add support for CUDA compute capability 6.x.
* Tools
+ Add --support to hwloc-info to list supported features, just like with
hwloc_topology_get_support().
- Also add --objects and --topology to explicitly switch between the
default modes.
+ Add --tid to let hwloc-bind operate on individual threads on Linux.
+ Add --nodeset to let hwloc-bind report memory binding as NUMA node sets.
+ hwloc-annotate and lstopo don't drop application userdata from XMLs anymore.
- Add --cu to hwloc-annotate to drop these application userdata.
+ Make the hwloc-dump-hwdata dump directory configurable through configure
options such as --runstatedir or --localstatedir.
* Misc Improvements
+ Add systemd service template contrib/systemd/hwloc-dump-hwdata.service
for launching hwloc-dump-hwdata at boot on Linux.
Thanks to Grzegorz Andrejczuk.
+ Add HWLOC_PLUGINS_BLACKLIST environment variable to prevent some plugins
from being loaded. Thanks to Alexandre Denis for the suggestion.
+ Small improvements for various Windows build systems,
thanks to Jonathan L Peyton and Marco Atzeri.
Version 1.11.2
--------------
* Improve support for Intel Knights Landing Xeon Phi on Linux:
+ Group local NUMA nodes of normal memory (DDR) and high-bandwidth memory
(MCDRAM) together through "Cluster" groups so that the local MCDRAM is
easy to find.
- See "How do I find the local MCDRAM NUMA node on Intel Knights
Landing Xeon Phi?" in the documentation.
- For uniformity across all KNL configurations, always have a NUMA node
object even if the host is UMA.
+ Fix the detection of the memory-side cache:
- Add the hwloc-dump-hwdata superuser utility to dump SMBIOS information
into /var/run/hwloc/ as root during boot, and load this dumped
information from the hwloc library at runtime.
- See "Why do I need hwloc-dump-hwdata for caches on Intel Knights
Landing Xeon Phi?" in the documentation.
Thanks to Grzegorz Andrejczuk for the patches and for the help.
* The x86 and linux backends may now be combined for discovering CPUs
through x86 CPUID and memory from the Linux kernel.
This is useful for working around buggy CPU information reported by Linux
(for instance the AMD Bulldozer/Piledriver bug below).
Combination is enabled by passing HWLOC_COMPONENTS=x86 in the environment.
* Fix L3 cache sharing on AMD Opteron 63xx (Piledriver) and 62xx (Bulldozer)
in the x86 backend. Thanks to many users who helped.
* Fix the overzealous L3 cache sharing fix added to the x86 backend in 1.11.1
for AMD Opteron 61xx (Magny-Cours) processors.
* The x86 backend may now add the info attribute Inclusive=0 or 1 to caches
it discovers, or to caches discovered by other backends earlier.
Thanks to Guillaume Beauchamp for the patch.
* Fix the management on alloc_membind() allocation failures on AIX, HP-UX
and OSF/Tru64.
* Fix spurious failures to load with ENOMEM on AIX in case of Misc objects
below PUs.
* lstopo improvements in X11 and Windows graphical mode:
+ Add + - f 1 shortcuts to manually zoom-in, zoom-out, reset the scale,
or fit the entire window.
+ Display all keyboard shortcuts in the console.
* Debug messages may be disabled at runtime by passing HWLOC_DEBUG_VERBOSE=0
in the environment when --enable-debug was passed to configure.
* Add a FAQ entry "What are these Group objects in my topology?".
* Changes in pdsh-2.31 (2013-11-07)
===================================
-- Fix issue 56: slurm: Allow mixed use of -P, -w and -j options.
-- Fix issue 59: pdsh very slow when using a few thousand hosts
and genders.
-- testsuite: Expanded tests for genders module (Pythagoras
Watson)
* Changes in pdsh-2.30 (2013-03-02)
===================================
-- Fix issue 55: genders -X option removes more hosts than
expected.
(This was a generic fix for hostname matching, so it probably
affected -x and other options as well.)
-- testsuite: Add test for issue 55.
Upstream changes:
20160822
- Bug fixes and man page updates.
20160722
- env_parallel is now ready for wider testing. It is still beta
quality.
- env_parallel is heavily modified for all shells and testing has been
increased.
- Selectively choosing what to export using --env now works for
env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
- --round-robin now gives more work to a job that processes faster
instead of same amount to all jobs.
- --pipepart works on block devices on GNU/Linux.
- Bug fixes and man page updates.
20160622
- $PATH can now be exported using --env PATH. Useful if GNU Parallel
is not in your path on remote machines.
- If --block is left out, --pipepart will use a block size that will
result in 10 jobs per jobslot.
- Bug fixes and man page updates.
20160522
- niceload --net pauses the program if the internet connection is
overloaded.
- Bug fixes and man page updates.
20160422
- :::+ and ::::+ work like ::: and :::: but links this input source to
the previous input source in a --xapply fashion. Contrary to
--xapply values do not wrap: The shortest input source determines
the length.
- --line-buffer --keep-order now outputs continously from the oldest
job still running. This is more what you would expect than the
earlier behaviour where --keep-order had no effect with
--line-buffer.
- env_parallel supports tcsh, csh, pdksh. In fish it now supports
arrays. In csh/tcsh it now supports variables, aliases, and arrays
with no special chars. In pdksh it supports aliases, functions,
variables, and arrays.
- Function exporting on Mac OS X works around old Bash version.
- Better CPU detection on OpenIndiana.
- Bug fixes and man page updates.
20160322
- env_parallel is a function that exports the environment (functions,
aliases, variables, and arrays) to GNU Parallel. Run 'man
env_parallel' for details.
- niceload --prg now searches for substrings if no process with the
name is found.
- Bug fixes and man page updates.
20160222
- Bug fixes and man page updates.
20160122
- --sql DBURL uses DBURL as storage for jobs and output. It does not
run any jobs so it requires at least one --sqlworker. DBURL must
point to a table.
- --sqlworker DBURL gets jobs from DBURL and stores the result back to
DBURL.
- --sqlandworker is a shorthand for --sql and --sqlworker.
- --sqlworker requires the output of a single job to fit in memory.
- --results now also saves a file called 'seq' containing the sequence
number.
- If $PARALLEL_ENV is a file, then that file will be read into
$PARALLEL_ENV.
- man parallel_tutorial has been given an overhaul.
- --workdir now accepts replacementstrings.
- Bug fixes and man page updates.
20151222
- --transfer is now an alias for --transferfile {}.
- --transferfile works like --transfer, but takes an argument like
--return. This makes it possible to combine transferring files
with multiple input sources: parallel -S server --tf {1} wc {2}
{1} ::: * ::: -l -w -c
- total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
$_=total_jobs() =}' ::: {1..50}
- Bug fixes and man page updates.
20151122
- Bug fixes and man page updates.
20151022
- --plus makes it possible to use {##} as a shorthand for
{= $_=$Global::JobQueue->total_jobs() =} which gives the the number
of jobs to run in total.
- {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
-m, and --xargs.
- GNU Parallel is now mostly compatible with lsh
(http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
autossh (http://www.harding.motd.ca/autossh/).
- --workdir ... now also works when run locally.
- Bug fixes and man page updates.
20150922
- Bug fixes and man page updates.
20150822
- If $job->skip() is called in {= =} the job will not be run.
- @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
$_="j" =}' ::: 1 2 3 ::: 4 5 6
- Bug fixes and man page updates.
20150722
- If a record fits in a block, --block only reads upto the size of
--block. If not: --block reads a full --block more.
- Due to widely spread distributions still using --tollef even after a
year of being retired following a year of being obsolete, --tollef
now gives an error unless used with --gnu.
- --nice now uses a perl wrapper instead of the nice command.
- Bug fixes and man page updates.
20150622
- --halt has been rewritten completely. You can now combine
percentages with success or fail. See the man page.
- Exit values 102..254 have been removed. 101 means more than 100 jobs
failed.
- Killing through --timeout, --memfree, or --halt is now done as a
process group.
- --termseq determines which signals are sent when a job is killed.
- An empty argument would previously cause no string to be
inserted. This is now changed to '' being inserted, thus prepending
a space to the output of: parallel echo {} b ::: ''
- $PARALLEL_ENV can now be set to an environment prepending the
command. Used in env_parallel as mentioned in the manpage.
- --retry-failed will retry all failed jobs in a joblog. It will
ignore any command given.
- --ssh and $PARALLEL_SSH can be used to set the command used for
ssh. The command is assumed to behave the same way as ssh.
- --fifo now works in csh, too.
- Q(...) can be used in {= =} to shell quote a string.
- Bug fixes and man page updates.
20150522
- Security: The security issue for --sshlogin + --fifo/--cat has been
fixed. Thereby all issues with
http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
have been fixed.
- Security: After further security analysis the issue fixed in
20150422 also fixed the problem for --tmux.
- Bug fixes and man page updates.
20150422
New in this release:
- Security fix. An attacker on the local system could make you
overwrite one of your own files with a single byte. The problem
exist when you use --compress or --tmux or --pipe or --cat or
--fifo. The attacker must figure out the randomly chosen file name
and create a symlink within a time window of 15 ms.
- --shuf will generate all jobs, and shuffle them before running
them. This is useful to get a quick preview of the results before
running the full batch.
- Bug fixes and man page updates.
20150322
New in this release:
- --number-of-cores respects 'taskset' on GNU/Linux.
- --joblog --pipe gives the data send and received in the log.
- Bug fixes and man page updates.
20150222
- --tmux has gotten a major overhaul.
- Bug fixes and man page updates.
20150122
- Remote jobs now send stderr (standard error) to stderr (standard
error) instead of stdout (standard output).
- Remote execution command is now packed using base64 encoded
bzip2. This means that big environments (app. 100 KB) can be
transferred. This change makes remote execution alpha quality.
- --semaphoretimeout now takes a negative value. This means give up if
the semaphore is not gotten within the timeout.
- --halt -1 and -2 now means halt if a job succeeds (so the opposite
of 1 and 2).
- --no-keep-order will reverse --keep-order.
- Bash's second fix of shellshock caused --env to break again when
exporting functions. This has been fixed again.
- A semibig refactoring of big functions. All non-trivial functions
are now less than 100 lines. The refactoring makes this release beta
quality.
- A description of the design decisions for GNU Parallel can be found
in 'man parallel_design'.
- A bug fix in replacement strings caused rewrite of the replacement
function. This makes use of replacement strings alpha quality.
- Bug fixes and man page updates.
20141122
- Remote systems can be divided into hostgroups (e.g. web and db) by
prepending '@groupname/' to the sshlogin. Multiple groups can be
given by separating groups with '+'. E.g. @web/www1 @web+db/www2
@db/mariadb
- Remote execution can be restricted to servers that are part of one
or more groups by '@groupname' as an sshlogin. Multiple groups can
be given by separating groups with '+'. E.g. -S @web or -S @db+web
- With --hostgroup you can restrict arguments to certain hostgroups by
appending '@groupname' to the argument. Multiple groups can be
given by separating groups with '+'. E.g. my_web_arg@web
db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
developing a prototype for this.
- Bug fixes and man page updates.
20141022
- --env was changed to deal with Bash's new way of exporting a function.
- Bug fixes and man page updates.
20140922
- If the file give as --sshloginfile is changed it will be re-read
when a job finishes though at most once per second. This makes it
possible to add and remove hosts while running.
20140822
- GNU Parallel now uses the same shell it was started from as the
command shell for local jobs. So if GNU Parallel is started from
tcsh it will use tcsh as its shell even if the login $SHELL is
different. For remote jobs the login $SHELL will be used.
- The whole current environment in bash can be copied by using a shell
wrapper function (Search manual for env_parallel).
- --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
{...} {/..} {/...}. The idea being that '+foo' matches the opposite
of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
= {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
- GNU Parallel now deals correctly with the combination
rsync-3.1.X-client and rsync-2.5.7-server
- Bug fixes and man page updates.
20140722
- {= perl expression =} can be used as replacement string. The
expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
the string. This makes replacement strings extremely flexible.
- Positional perl expressions (similar to {2}) are given as {=2 perl
expression=} where 2 is the position.
- One small backwards incompatibility: {1}_{2} will replace {2} with
the empty string if there is only one argument. Previously {2} would
have been left untouched.
- Replacement strings can be defined using --rpl. E.g. parallel --rpl
'{.gz} s/\.gz$//' echo {.gz} ::: *.gz
- The parenthesis around {= perl expression =} can be changed with
--parens.
- --tmux will direct the output to a tmux session instead of
files. Each running jobs will be in its own window.
- --halt 10% will stop spawning new jobs if 10% failed so far.
- Bug fixes and man page updates.
20140622
- --shebang and --shebang-wrap now works on FreeBSD.
- --pipepart works with --header, --regexp, --cat and --fifo.
- ./configure --disable-documentation will not build documentation.
- {%} works as job slot.
- Bug fixes and man page updates.
20140522
- Use --semaphoretimeout to ignore the semaphore lock after a while.
- {%} introduced as job slot replacement string. It has known bugs.
- --slotreplace changes slot replacement string.
- Bug fixes and man page updates.
20140422
- --pipepart is a highly efficient alternative to --pipe if the input
is a real file and not a pipe.
- If using --cat or --fifo with --pipe the {} in the command will be
replaced with the name of a physical file and a fifo respectively
containing the block from --pipe. Useful for commands that cannot
read from standard input (stdin).
- --controlmaster has gotten an overhaul and is no longer
experimental.
- --env is now copied when determining CPUs on remote system. Useful
for copying $PATH if parallel is not in the normal path.
- --results now chops the argument if the argument is longer than the
allowed path length.
- Build now survives if pod2* are not installed.
- Bug fixes and man page updates.
20140322
- Bug fixes and man page updates.
20140222
- --tollef has been retired.
- --compress has be redesigned due to bugs.
- Format of --eta and --joblog has changed slightly.
- Bug fixes and man page updates.
20140122
- Bug fixes and man page updates.
20131222
- GNU Parallel now has a motto: For people who live life in the
parallel lane.
- Detect if the buffer dir $TMPDIR runs out of space. This changes a
central piece of code, making this release alpha quality.
- --keep-order --(n)onall will sort according to the sshlogin.
- Detect the number of CPUs on DEC Tru64.
- GNU sql: --list-tables for sqlite3.
- Bug fixes and man page updates.
20131122
- A citation notice is printed on stderr only if stderr is a terminal,
the user has not specified --no-notice and the user has not run
--bibtex once. This makes the release alpha quality.
- --compress will compress temporary files. If the output is big and
very compressible this will take up less disk space in $TMPDIR and
possibly be faster due to less disk I/O.
- --compress-program comtrols which program to use for compressing
temporary files.
- --bar show progress as a progress bar compatible with zenity.
- --resume can now be used with --result: Jobs already run will be
skipped.
- --transfer and --basefile support paths relative to the --workdir by
inserting /./ into the path.
- Bug fixes and man page updates.
20131022
- --transfer files with /./ in the path will copy the files relative
to the --workdir.
- The maximal command length is now cached in a file halfing the
startup time.
- Bug fixes and man page updates.
20130922
- PDF-files of documentation is now included.
- Bug fixes and man page updates.
20130822
- A tutorial showing much of GNU Parallel's functionality. Spend an
hour walking through the tutorial. Your commandline will love you
for it. man parallel_tutorial
- --line-buffer will buffer output on line basis. --group keeps the
output together for a whole job. --ungroup allows output to mixup
with half a line coming from one job and half a line coming from
another job. --line-buffer fits between these two; it prints a full
line, but will allow for mixing lines of different jobs.
- --record-env records all variables and functions set. Useful to
record the normal environment before using --env _.
- --env _ exports all functions and variables to the remote server
except for the ones recorded.
- New signing key. Due to recommendations from NIST
http://www.keylength.com/en/4/ the signing key was changed from
1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
- Bug fixes and man page updates.
20130722
- --round-robin with --pipe will write all blocks to already running
jobs.
- --env can now transfer Bash function for remote execution. That is
pretty cool!
- Quite a few bug fixes and man page updates.
20130622
- --xapply now recycles arguments if an input source has more
arguments than others.
- The sleep time between jobs is now both increased and decreased
exponentially.
- 10 seconds installation check the signature using GnuPG if GnuPG is
installed.
- Bug fixes and man page updates.
20130522
- --ctrlc is now default if --pipe is not used; thus making it
possible to kill remotely started jobs simply by pressing Ctrl-C.
- --timeout 200% now means kill jobs that take more than twice the
time of the median run time of a job.
- Jobs are now distributed round robin when having mulitiple
--sshlogin instead of filling up one --sshlogin at a time.
- niceload: darwin version of --io --mem --swap. Thanks to Anders F
Bjorklund.
- Bug fixes and man page updates.
20130422
- 10 seconds installation: wget -O - pi.dk/3 | sh
- HPUX CPU/core detection. Thanks to Javier Tarradas.
- CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
- --ctrlc will send SIGINT to tasks running on remote computers and
thus killing them.
- --load now uses 'ps' to see immediately see the number of running
processes instead of 'uptime' thus making --load react much faster.
- Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
bugs. Some of these required quite extensive changes making this
release beta quality.
- --retries works with --onall.
- The new --load computation now works on FreeBSD 7.
- --nice works under tcsh.
- Bug fixes and man page updates.
20130222
- --resume works with --pipe.
- --resume-failed will go through --joblog, redo the failed jobs and
then continue like --resume.
- Negative positional arguments count from the end: {-1} means the
last argument, {-2} the second to last.
- NetBSD CPU detection.
- --blocksize increases exponentially if it smaller than a full
record.
- Processing n-line records (--pipe -L n) is now much faster.
- --tollef is obsoleted after discussion on the mailing list.
- Bug fixes and man page updates.
Upstream changelog follows.
3.7.2
* Fix for a memory leak if override_hostname or override_ip are used
3.7.1
* Hash table in gmetad has been reworked to support much higher metric
counts and larger number of metrics
* A number of GMond python modules have been rewritten and enhanced
3.7.0
* Add support for sending Ganglia metrics to Riemann
* Performance improvements for gmetad
* Export internal gmetad metrics
3.6.0
* Improvements
- Add ability to gzip XML output in gmond
- Forward Graphite metrics over UDP for increased scalability
- Configurable graphite prefix
- Memcached publish support - export metrics into memcached
- Improve metric summarization performance under heavy load
* Bug fixes
- Reduce CPU utilization when running in deaf mode
3.5.0
* gmond uses a separate thread to service gmetad requests. This should
improve performance
* Updates to a number of core Python collection modules
3.4.0
* web
- now distributed as a separate source tarball, web/ tree is not present
in the ganglia-3.4.0 tarball
* gmond:
- setgid() and initgroups() are invoked when setuid() is invoked - gmond
no longer runs in root group (there may be side-effects from this change)
- new UDP RX channel parameter `buffer' to set the socket buffer size
3.3.7
* gmond
- BUG100: fails to start in Solaris zones
- fails to start when no address on the network interface (added
retry_bind parameter)
- BUG321: fails to start when Solaris CPU in state FAILED (seg fault)
3.3.6
* gmond
- BUG327: memory leak when receive channel is not configured or not
hearing any data
3.3.5
* General
- Return to the use of autotools (make dist) for building the release
- Release with a valid version number in configure.in
* Gmetad
- Fix for gmetad buffer overflow with metric value of DOUBLE_MAX
* Gmond python modules
- multi traffic module has been replaced with multi interface which
correctly reports all interfaces
* Gmond
- Fix for issues/11
- Expose some useful functions in the public C API to assist module
developers
3.3.1
* Web
- Graph Zooming off when Ganglia Web server and web browser in different
time zones
- Metrics chooser in cluster view now provides metric drop down in
addition to autocomplete
- Ability to specify default size for graphs in Views
Gmetad
- You can now disable RRD writing - useful if you are using Ganglia only
to feed Graphite
- Export to graphite now handles spaces in metrics, groups
- Minor code clean up and fixes
* Gmond
- Diskstat python module incorrect IO time reporting has been fixed.
3.3.0
* Web UI shipped with Ganglia has been upgraded to the Ganglia Web
2.0 interface. Changes to web UI from Gweb 2.2.0 are as follows
- Additional Nagios integration scripts
- Contributed by Etsy - stacked graph in the cluster view
- Ability to hide/show events on individual graphs or whole pages
- Numerous bug fixes and small enhancements
* metric names are sanitized to avoid breaking gmetad/UI when characters
such as <, > are supplied. Those are now replaced with underscores
* gmetad supports sending metrics to graphite. Uncomment proper section
of gmetad.conf to enable
* Default RRD resolution changed. It affects only newly created RRDs. To
change to old behavior please modify the RRA field in gmetad.conf
* Number of Python modules from Ganglia gmond_python_modules repository
have been included such as disk statistics, individual interface
statistics, etc. Most of the modules are disabled. To enable rename
the files in /etc/ganglia/conf.d.
* sFlow has been enhanced to support Virtual machine pool/Java
VM/Memcache/Apache/NGINX/Tomcat and node.js metrics. You can read more
at sFlow blog
3.2.0
* sFlow support - more and even more
* hostname/ip override - you can specify an arbitrary host name and IP
to be shown in the UI.
* FreeBSD patches
* Python module improvements
* Bugfixes and improvements over 3.1.7
3.1.7:
* Fix build support for RHEL5/issue with commas in CFLAGS
* multicpu module: show CPU utilization as a value between 0-100% for
each core
3.1.3 - 3.1.6:
* Merge commit 1966 from trunk to fix "contrib/removespikes.pl"
* Bootstrapping with Debian 5.0 (lenny) versions of autotools for
this and future releases.
* Require user to explicitly specify sysconfdir when building from source,
due to the fact that the old behavior was not consistent with the
documented behavior.
* Configuration files and scripts are now created during the install phase
rather than during configure. This allows values such as @sysconfdir@
to be used in the template configuration files.
* Abolish the use of release names - only release numbers will be used
to distinguish versions in future
* libmetrics: workaround system header conflict in DFBSD >= 2.4 (BUG245)
* Use PCRE regex matching to configure metrics using the name_match directive
* rrdcached support
* gmetad now uses apr and the sleep intervals between polls are randomized
in a way that supports shorter polling intervals
* FreeBSD support: fixes for crashes and disk statistics (BUG153)
* Further tweaks to Solaris build support (remove C99 hack)
* Eliminate conflict with ncpus symbol name on older Solaris
* AIX support: determine if the host is a virtual server (BUG226)
* AIX support: setting linker flags (BUG227), add -lm
* AIX support: tweaks for AIX >= v6.1
* AIX support: revised init scripts for gmond and gmetad
* Check for Python.h explicitly
* Include the necessary Python files in the distribution tarball, regardless
of how BUILD_PYTHON is set (r2215).
* Remove references to GNU toolchain in documentation
* Fortify write_data_to_rrd against overflows
* Web interface: minor formatting changes
* mcast_if implementation tweaked so that the send channel will be bound
to the IP of the outgoing interface
* Documentation updates relating to the options for multihomed hosts,
particularly bind, bind_hostname and mcast_if
* gmond: Limit the use of APR_POLLSET_THREADSAFE to Linux >= 2.6
* gmond: improve/revert setuid behavior in configure script
* gmond: Fix the allow_extra_data configuration directive (BUG199)
* gmond: Ensure that a complete XML dump is delivered before closing
the send socket. Submitted by: Jerry <adawzq 126 com>
* gmond: add bind and bind_hostname parameters for udp_send_channel()
* gmetad: BUG232: eliminate case-sensitive hostname bug, user can choose to
maintain legacy behavior though.
* gmond: BUG237: revise fix for segfault on Solaris where first CPU not in
slot 0
* gmond: support for HUP signal on platforms with execve
* gmond: status module: return gmond version info as string metrics
* gmond: Check return status of apr_pollset_create. Use
APR_POLLSET_THREADSAFE on Linux.
* build: various configure options: Solaris 8 with Sun Studio 11 support,
extra modules for static linking, default setuid, release number,
build multicpu and status during static builds, support for
SYSCONFDIR (BUG16)
* RPM: include status module, allow packager to supply own gmond.conf
* build: Look in lib64 rather than lib for apr, confuse and expat on x86_64
Changes:
1.10.1
------
- Workaround an optimization problem with gcc compilers >= 4.9.2 that
causes problems with memory registration, and forced
mpi_leave_pinned to default to 0 (i.e., off). Thanks to @oere for
the fix.
- Fix use of MPI_LB and MPI_UB in subarray and darray datatypes.
Thanks to Gus Correa and Dimitar Pashov for pointing out the issue.
- Minor updates to mpi_show_mpi_alloc_mem_leaks and
ompi_debug_show_handle_leaks functionality.
- Fix segv when invoking non-blocking reductions with a user-defined
operation. Thanks to Rupert Nash and Georg Geiser for identifying
the issue.
- No longer probe for PCI topology on Solaris (unless running as root).
- Fix for Intel Parallel Studio 2016 ifort partial support of the
!GCC$ pragma. Thanks to Fabrice Roy for reporting the problem.
- Bunches of Coverity / static analysis fixes.
- Fixed ROMIO to look for lstat in <sys/stat.h>. Thanks to William
Throwe for submitting the patch both upstream and to Open MPI.
- Fixed minor memory leak when attempting to open plugins.
- Fixed type in MPI_IBARRIER C prototype. Thanks to Harald Servat for
reporting the issue.
- Add missing man pages for MPI_WIN_CREATE_DYNAMIC, MPI_WIN_ATTACH,
MPI_WIN_DETACH, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED.
- When mpirun-launching new applications, only close file descriptors
that are actually open (resulting in a faster launch in some
environments).
- Fix "test ==" issues in Open MPI's configure script. Thank to Kevin
Buckley for pointing out the issue.
- Fix performance issue in usnic BTL: ensure progress thread is
throttled back to not aggressively steal CPU cycles.
- Fix cache line size detection on POWER architectures.
- Add missing #include in a few places. Thanks to Orion Poplawski for
supplying the patch.
- When OpenSHMEM building is disabled, no longer install its header
files, help files, or man pages. Add man pages for oshrun, oshcc,
and oshfort.
- Fix mpi_f08 implementations of MPI_COMM_SET_INFO, and profiling
versions of MPI_BUFFER_DETACH, MPI_WIN_ALLOCATE,
MPI_WIN_ALLOCATE_SHARED, MPI_WTICK, and MPI_WTIME.
- Add orte_rmaps_dist_device MCA param, allowing users to map near a
specific device.
- Various updates/fixes to the openib BTL.
- Add missing defaults for the Mellanox ConnectX 3 card to the openib BTL.
- Minor bug fixes in the OFI MTL.
- Various updates to Mellanox's MXM, hcoll, and FCA components.
- Add OpenSHMEM man pages. Thanks to Tony Curtis for sharing the man
pages files from openshmem.org.
- Add missing "const" attributes to MPI_COMPARE_AND_SWAP,
MPI_FETCH_AND_OP, MPI_RACCUMULATE, and MPI_WIN_DETACH prototypes.
Thanks to Michael Knobloch and Takahiro Kawashima for bringing this
to our attention.
- Fix linking issues on some platforms (e.g., SLES 12).
- Fix hang on some corner cases when MPI applications abort.
- Add missing options to mpirun man page. Thanks to Daniel Letai
for bringing this to our attention.
- Add new --with-platform-patches-dir configure option
- Adjust relative selection priorities to ensure that MTL
support is favored over BTL support when both are available
- Use CUDA IPC for all sized messages for performance
1.10.0
------
** NOTE: The v1.10.0 release marks the transition to Open MPI's new
** version numbering scheme. The v1.10.x release series is based on
** the v1.8.x series, but with a few new features. v2.x will be the
** next series after the v1.10.x series, and complete the transition
** to the new version numbering scheme. See README for more details
** on the new versioning scheme.
**
** NOTE: In accordance with OMPI version numbering, the v1.10 is *not*
** API compatible with the v1.8 release series.
- Added libfabric support (see README for more details):
- usNIC BTL updated to use libfabric.
- Added OFI MTL (usable with PSM in libfabric v1.1.0).
- Added Intel Omni-Path support via new PSM2 MTL.
- Added "yalla" PML for faster MXM support.
- Removed support for MX
- Added persistent distributed virtual machine (pDVM) support for fast
workflow executions.
- Fixed typo in GCC inline assembly introduced in Open MPI v1.8.8.
Thanks to Paul Hargrove for pointing out the issue.
- Add missing man pages for MPI_Win_get|set_info(3).
- Ensure that session directories are cleaned up at the end of a run.
- Fixed linking issues on some OSs where symbols of dependent
libraries are not automatically publicly available.
- Improve hcoll and fca configury library detection. Thanks to David
Shrader for helping track down the issue.
- Removed the LAMA mapper (for use in setting affinity). Its
functionality has been largely superseded by other mpirun CLI
options.
- CUDA: Made the asynchronous copy mode be the default.
- Fix a malloc(0) warning in MPI_IREDUCE_SCATTER_BLOCK. Thanks to
Lisandro Dalcin for reporting the issue.
- Fix typo in MPI_Scatter(3) man page. Thanks to Akshay Venkatesh for
noticing the mistake.
- Add rudimentary protection from TCP port scanners.
- Fix typo in Open MPI error handling. Thanks to ¥ke Sandgren for
pointing out the error.
- Increased the performance of the CM PML (i.e., the Portals, PSM,
PSM2, MXM, and OFI transports).
- Restored visibility of blocking send requests in message queue
debuggers (e.g., TotalView, DDT).
- Fixed obscure IPv6-related bug in the TCP BTL.
- Add support for the "no_locks" MPI_Info key for one-sided
functionality.
- Fixed ibv_fork support for verbs-based networks.
- Fixed a variety of small bugs in OpenSHMEM.
- Fixed MXM configure with additional CPPFLAGS and LDFLAGS. Thanks to
David Shrader for the patch.
- Fixed incorrect memalign threshhold in the openib BTL. Thanks to
Xavier Besseron for pointing out the issue.
1.8.8
-----
- Fix a segfault in MPI_FINALIZE with the PSM MTL.
- Fix mpi_f08 sentinels (e.g., MPI_STATUS_IGNORE) handling.
- Set some additional MXM default values for OSHMEM.
- Fix an invalid memory access in MPI_MRECV and MPI_IMRECV.
- Include two fixes that were mistakenly left out of the official
v1.8.7 tarball:
- Fixed MPI_WIN_POST and MPI_WIN_START for zero-size messages
- Protect the OOB TCP ports from segfaulting when accessed by port
scanners
1.8.7
----
** NOTE: v1.8.7 technically breaks ABI with prior versions
** in the 1.8 series because it repairs two incorrect API
** signatures. However, users will only need to recompile
** if they were using those functions - which they couldn't
** have been, because the signatures were wrong :-)
- Plugged a memory leak that impacted blocking sends
- Fixed incorrect declaration for MPI_T_pvar_get_index and added
missing return code MPI_T_INVALID_NAME.
- Fixed an uninitialized variable in PMI2 support
- Added new vendor part id for Mellanox ConnectX4-LX
- Fixed NBC_Copy for legitimate zero-size messages
- Fixed MPI_Win_post and MPI_Win_start for zero-size messages
- Protect the OOB ports from segfaulting when accessed by port scanners
- Fixed several Fortran typos
- Fixed configure detection of XRC support
- Fixed support for highly heterogeneous systems to avoid
memory corruption when printing out the bindings
1.8.6
-----
- Fixed memory leak on Mac OS-X exposed by TCP keepalive
- Fixed keepalive support to ensure that daemon/node failure
results in complete job cleanup
- Update Java binding support
- Fixed MPI_THREAD_MULTIPLE bug in vader shared memory BTL
- Fixed issue during shutdown when CUDA initialization wasn't complete
- Fixed orted environment when no prefix given
- Fixed trivial typo in MPI_Neighbor_allgather manpage
- Fixed tree-spawn support for sh and ksh shells
- Several data type fixes
1.8.5
-----
- Fixed configure problems in some cases when using an external hwloc
installation. Thanks to Erick Schnetter for reporting the error and
helping track down the source of the problem.
- Fixed linker error on OS X when using the clang compiler. Thanks to
Erick Schnetter for reporting the error and helping track down the
source of the problem.
- Fixed MPI_THREAD_MULTIPLE deadlock error in the vader BTL. Thanks
to Thomas Klimpel for reporting the issue.
- Fixed several Valgrind warnings. Thanks for Lisandro Dalcin for
contributing a patch fixing some one-sided code paths.
- Fixed version compatibility test in OOB that broke ABI within the
1.8 series. NOTE: this will not resolve the problem between pre-1.8.5
versions, but will fix it going forward.
- Fix some issues related to running on Intel Xeon Phi coprocessors.
- Opportunistically switch away from using GNU Libtool's libltdl
library when possible (by default).
- Fix some VampirTrace errors. Thanks to Paul Hargrove for reporting
the issues.
- Correct default binding patterns when --use-hwthread-cpus was
specified and nprocs <= 2.
- Fix warnings about -finline-functions when compiling with clang.
- Updated the embedded hwloc with several bug fixes, including the
"duplicate Lhwloc1 symbol" that multiple users reported on some
platforms.
- Do not error when mpirun is invoked with with default bindings
(i.e., no binding was specified), and one or more nodes do not
support bindings. Thanks to Annu Desari for pointing out the
problem.
- Let root invoke "mpirun --version" to check the version without
printing the "Don't run as root!" warnings. Thanks to Robert McLay
for the suggestion.
- Fixed several bugs in OpenSHMEM support.
- Extended vader shared memory support to 32-bit architectures.
- Fix handling of very large datatypes. Thanks to Bogdan Sataric for
the bug report.
- Fixed a bug in handling subarray MPI datatypes, and a bug when using
MPI_LB and MPI_UB. Thanks to Gus Correa for pointing out the issue.
- Restore user-settable bandwidth and latency PML MCA variables.
- Multiple bug fixes for cleanup during MPI_FINALIZE in unusual
situations.
- Added support for TCP keepalive signals to ensure timely termination
when sockets between daemons cannot be created (e.g., due to a
firewall).
- Added MCA parameter to allow full use of a SLURM allocation when
started from a tool (supports LLNL debugger).
- Fixed several bugs in the configure logic for PMI and hwloc.
- Fixed incorrect interface index in TCP communications setup. Thanks
to Mark Kettenis for spotting the problem and providing a patch.
- Fixed MPI_IREDUCE_SCATTER with single-process communicators when
MPI_IN_PLACE was not used.
- Added XRC support for OFED v3.12 and higher.
- Various updates and bug fixes to the Mellanox hcoll collective
support.
- Fix problems with Fortran compilers that did not support
REAL*16/COMPLEX*32 types. Thanks to Orion Poplawski for identifying
the issue.
- Fixed problem with rpath/runpath support in pkg-config files.
Thanks to Christoph Junghans for notifying us of the issue.
- Man page fixes:
- Removed erroneous "color" discussion from MPI_COMM_SPLIT_TYPE.
Thanks to Erick Schnetter for spotting the outdated text.
- Fixed prototypes for MPI_IBARRIER. Thanks to Maximilian for
finding the issue.
- Updated docs about buffer usage in non-blocking communications.
Thanks to Alexander Pozdneev for citing the outdated text.
- Added documentation about the 'ompi_unique' MPI_Info key with
MPI_PUBLISH_NAME.
- Fixed typo in MPI_INTERCOMM_MERGE. Thanks to Harald Servat for
noticing and sending a patch.
- Updated configure paths in HACKING. Thanks to Maximilien Levesque
for the fix.
- Fixed Fortran typo in MPI_WIN_LOCK_ALL. Thanks to Thomas Jahns
for pointing out the issue.
- Fixed a number of MPI one-sided bugs.
- Fixed MPI_COMM_SPAWN when invoked from a singleton job.
- Fixed a number of minor issues with CUDA support, including
registering of shared memory and supporting reduction support for
GPU buffers.
- Improved support for building OMPI on Cray platforms.
- Fixed performance regression introduced by the inadvertent default
enabling of MPI_THREAD_MULTIPLE support.
1.8.4
-----
- Fix MPI_SIZEOF; now available in mpif.h for modern Fortran compilers
(see README for more details). Also fixed various compiler/linker
errors.
- Fixed inadvertant Fortran ABI break between v1.8.1 and v1.8.2 in the
mpi interface module when compiled with gfortran >= v4.9.
- Fix various MPI_THREAD_MULTIPLE issues in the TCP BTL.
- mpirun no longer requires the --hetero-nodes switch; it will
automatically detect when running in heterogeneous scenarios.
- Update LSF support, to include revamped affinity functionality.
- Update embedded hwloc to v1.9.1.
- Fixed max registerable memory computation in the openib BTL.
- Updated error message when debuggers are unable to find various
symbols/types to be more clear. Thanks to Dave Love for raising the
issue.
- Added proper support for LSF and PBS/Torque libraries in static builds.
- Rankfiles now support physical processor IDs.
- Fixed potential hang in MPI_ABORT.
- Fixed problems with the PSM MTL and "re-connect" scenarios, such as
MPI_INTERCOMM_CREATE.
- Fix MPI_IREDUCE_SCATTER with a single process.
- Fix (rare) race condition in stdout/stderr funneling to mpirun where
some trailing output could get lost when a process terminated.
- Removed inadvertent change that set --enable-mpi-thread-multiple "on"
by default, thus impacting performance for non-threaded apps.
- Significantly reduced startup time by optimizing internal hash table
implementation.
- Fixed OS X linking with the Fortran mpi module when used with
gfortran >= 4.9. Thanks to Github user yafshar for raising the
issue.
- Fixed memory leak on Cygwin platforms. Thanks for Marco Atzeri for
reporting the issue.
- Fixed seg fault in neighborhood collectives when the degree of the
topology is higher than the communicator size. Thanks to Lisandro
Dalcin for reporting the issue.
- Fixed segfault in neighborhood collectives under certain use-cases.
- Fixed various issues regarding Solaris support. Thanks to Siegmar
Gross for patiently identifying all the issues.
- Fixed PMI configure tests for certain Slurm installation patterns.
- Fixed param registration issue in Java bindings. Thanks to Takahiro
Kawashima and Siegmar Gross for identifying the issue.
- Several man page fixes.
- Silence several warnings and close some memory leaks (more remain,
but it's better than it was).
- Re-enabled the use of CMA and knem in the shared memory BTL.
- Updated mpirun manpage to correctly explain new map/rank/binding options.
- Fixed MPI_IALLGATHER problem with intercommunicators. Thanks for
Takahiro Kawashima for the patch.
- Numerous updates and performance improvements to OpenSHMEM.
- Turned off message coalescing in the openib BTL until a proper fix
for that capability can be provided (tentatively expected for 1.8.5)
- Fix a bug in iof output that dates back to the dinosaurs which would
output extra bytes if the system was very heavily loaded
- Fix a bug where specifying mca_component_show_load_errors=0 could
cause ompi_info to segfault
- Updated valgrind suppression file
1.8.3
-----
- Fixed application abort bug to ensure that MPI_Abort exits appropriately
and returns the provided exit status
- Fixed some alignment (not all) issues identified by Clang
- Allow CUDA-aware to work with nonblocking collectives. Forces packing to
happen when using GPU buffers.
- Fixed configure test issue with Intel 2015 Fortran compiler
- Fixed some PGI-related errors
- Provide better help message when encountering a firewall
- Fixed MCA parameter quoting to protect multi-word params and params
that contain special characters
- Improved the bind-to help message to clarify the defaults
- Add new MPI-3.1 tools interface
- Several performance optimizations and memory leak cleanups
- Turn off the coll/ml plugin unless specifically requested as it
remains in an experimental state
- Fix LSF support by adding required libraries for the latest LSF
releases. Thanks to Joshua Randal for supplying the initial
patches.
1.8.2
-----
- Fix auto-wireup of OOB, allowing ORTE to automatically
test all available NICs
- "Un-deprecate" pernode, npernode, and npersocket options
by popular demand
- Add missing Fortran bindings for MPI_WIN_LOCK_ALL,
MPI_WIN_UNLOCK_ALL, and MPI_WIN_SYNC.
- Fix cascading/over-quoting in some cases with the rsh/ssh-based
launcher. Thanks to multiple users for raising the issue.
- Properly add support for gfortran 4.9 ignore TKR pragma (it was
erroneously only partially added in v1.7.5). Thanks to Marcus
Daniels for raising the issue.
- Update/improve help messages in the usnic BTL.
- Resolve a race condition in MPI_Abort.
- Fix obscure cases where static linking from wrapper compilers would
fail.
- Clarify the configure --help message about when OpenSHMEM is
enabled/disabled by default. Thanks to Paul Hargrove for the
suggestion.
- Align pages properly where relevant. Thanks to Paul Hargrove for
identifying the issue.
- Various compiler warning and minor fixes for OpenBSD, FreeBSD, and
Solaris/SPARC. Thanks to Paul Hargrove for the patches.
- Properly pass function pointers from Fortran to C in the mpi_f08
module, thereby now supporting gfortran 4.9. Thanks to Tobias
Burnus for assistance and testing with this issue.
- Improve support for Cray CLE 5.
- Fix mpirun regression: ensure exit status is non-zero if mpirun is
terminated due to signal.
- Improved CUDA efficiency of asynchronous copies.
- Fix to parameter type in MPI_Type_indexed.3. Thanks to Bastian
Beischer for reporting the mistake.
- Fix NUMA distance calculations in the openib BTL.
- Decrease time required to shut down mpirun at the end of a job.
- More RMA fixes.
- More hostfile fixes from Tetsuya Mishima.
- Fix darray issue where UB was not computed correctly.
- Fix mpi_f08 parameter name for MPI_GET_LIBRARY_VERSION. Thanks to
Junchao Zhang for pointing out the issue.
- Ensure mpirun aborts properly when unable to map processes in
scheduled environments.
- Ensure that MPI RMA error codes show up properly. Thanks to
Lisandro Dalcin for reporting the issue.
- Minor bug fixes and improvements to the bash and zsh mpirun
autocompletion scripts.
- Fix sequential mpirun process mapper. Thanks to Bill Chen for
reporting the issue.
- Correct SLURM stdout/stderr redirection.
- Added missing portals 4 files.
- Performance improvements for blocking sends and receives.
- Lots of cleanup to the ml collective component
- Added new Java methods to provide full MPI coverage
- Many OSHMEM cleanups
- Prevent comm_spawn from automatically launching a VM across
all available nodes
- Close many memory leaks to achieve valgrind-clean operation
- Better handling of TCP connection discovery for mismatched networks
where we don't have a direct 1:1 subnet match between nodes
- Prevent segfault when OMPI info tools are used in pipes and user
exits one step of that pipe before completing output
1.8.1
-----
- Fix for critical bug: mpirun removed files (but not directories)
from / when run as root. Thanks to Jay Fenlason and Orion Poplawski
for bringing the issue to our attention and helping identify the
fix.
1.8
---
- Commit upstream ROMIO fix for mixed NFS+local filesystem environments.
- Several fixes for MPI-3 one-sided support. For example,
arbitrary-length datatypes are now supported.
- Add config support for the Mellanox ConnectX 4 card.
- Add missing MPI_COMM_GET|SET_INFO functions, and missing
MPI_WEIGHTS_EMPTY and MPI_ERR_RMA_SHARED constants. Thanks to
Lisandro Dalcin for pointing out the issue.
- Update some help messages in OSHMEM, the usnic BTL, the TCP BTL, and
ORTE, and update documentation about ompi_info's --level option.
- Fix some compiler warnings.
- Ensure that ORTE daemons are not bound to a single processor
if TaskAffinity is set on by default in Slurm. Thanks to Artem Polyakov
for identifying the problem and providing a patch
1.7.5
-----
**********************************************************************
* Open MPI is now fully MPI-3.0 compliant
**********************************************************************
- Add Linux OpenSHMEM support built on top of Open MPI's MPI
layer. Thanks to Mellanox for contributing this new feature.
- Allow restricting ORTE daemons to specific cores using the
orte_daemon_cores MCA param.
- Ensure to properly set "locality" flags for processes launched via
MPI dynamic functions such as MPI_COMM_SPAWN.
- Fix MPI_GRAPH_CREATE when nnodes is smaller than the size of the old
communicator.
- usnic BTL now supports underlying UDP transport.
- usnic BTL now checks for common connectivty errors at first send to
a remote server.
- Minor scalability improvements in the usnic BTL.
- ompi_info now lists whether the Java MPI bindings are available or not.
- MPI-3: mpi.h and the Fortran interfaces now report MPI_VERSION==3
and MPI_SUBVERSION==0.
- MPI-3: Added support for new RMA functions and functionality.
- Fix MPI_Info "const buglet. Thanks to Orion Poplawski for
identifying the issue.
- Multiple fixes to mapping/binding options. Thanks to Tetsuya Mishima
for his assistance.
- Multiple fixes for normal and abnormal process termination,
including singleton MPI_Abort and ensuring to kill entire process
groups when abnormally terminating a job.
- Fix DESTDIR install for javadocs. Thanks to Orion Poplawski for
pointing out the issue.
- Various performance improvements for the MPI Java bindings.
- OMPI now uses its own internal random number generator and will not
perturb srand() and friends.
- Some cleanups for Cygwin builds. Thanks to Marco Atzeri for the
patches.
- Add a new collective component (coll/ml) that provides substantially
improved performance. It is still experimental, and requires
setting coll_ml_priority > 0 to become active.
- Add version check during startup to ensure you are using the same
version of Open MPI on all nodes in a job.
- Significantly improved the performance of MPI_DIMS_CREATE for large
values. Thanks to Andreas Schfer for the contribution.
- Removed ASYNCHRONOUS keyword from the "ignore TKR" mpi_f08 module.
- Deprecated the following mpirun options:
--bynode, --bycore, --byslot: replaced with --map-by node|core|slot.
--npernode, --npersocket: replaced with --map-by ppr:N:node and
--map-by ppr:N:socket, respectively
- Pick NFS "infinitely stale" fix from ROMIO upstream.
- Various PMI2 fixes and extension to support broader range of mappings.
- Improve launch performance at large scale.
- Add support for PBS/Torque environments that set environment
variables to indicate the number of slots available on each nodes.
Set the ras_tm_smp MCA parameter to "1" to enable this mode.
- Add new, more scalable endpoint exchange (commonly called "modex")
method that only exchanges endpoint data on a per-peer basis
on first message. Not all transports have been updated to use
this feature. Set the rte_orte_direct_modex parameter to "1"
to enable this mode.
1.7.4
-----
**********************************************************************
* CRITICAL CHANGE
*
* As of release 1.7.4, OpenMPI's default mapping, ranking, and binding
* settings have changed:
*
* Mapping:
* if #procs <= 2, default to map-by core
* if #procs > 2, default to map-by socket
* Ranking:
* if default mapping is used, then default to rank-by slot
* if map-by <obj> is given, then default to rank-by <obj>,
* where <obj> is whatever object we mapped against
* Binding:
* default to bind-to core
*
* Users can override any of these settings individually using the
* corresponding MCA parameter. Note that multi-threaded applications
* in particular may want to override at least the binding default
* to allow threads to use multiple cores.
**********************************************************************
- Restore version number output in "ompi_info --all".
- Various bug fixes for the mpi_f08 Fortran bindings.
- Fix ROMIO compile error with Lustre 2.4. Thanks to Adam Moody for
reporting the issue.
- Various fixes for 32 bit platforms.
- Add ability to selectively disable building the mpi or mpi_f08
module. See the README file for details.
- Fix MX MTL finalization issue.
- Fix ROMIO issue when opening a file with MPI_MODE_EXCL.
- Fix PowerPC and MIPS assembly issues.
- Various fixes to the hcoll and FCA collective offload modules.
- Prevent integer overflow when creating datatypes. Thanks to
original patch from Gilles Gouaillardet.
- Port some upstream hwloc fixes to Open MPI's embedded copy for
working around buggy NUMA node cpusets and including mising header
files. Thanks to Jeff Becker and Paul Hargrove for reporting the
issues.
- Fix recursive invocation issues in the MXM MTL.
- Various bug fixes to the new MCA parameter back-end system.
- Have the posix fbtl module link against -laio on NetBSD platforms.
Thanks to Paul Hargrove for noticing the issue.
- Various updates and fixes to network filesystem detection to support
more operating systems.
- Add gfortran v4.9 "ignore TKR" syntax to the mpi Fortran module.
- Various compiler fixes for several BSD-based platforms. Thanks to
Paul Hargrove for reporting the issues.
- Fix when MPI_COMM_SPAWN[_MULTIPLE] is used on oversubscribed
systems.
- Change the output from --report bindings to simply state that a
process is not bound, instead of reporting that it is bound to all
processors.
- Per MPI-3.0 guidance, remove support for all MPI subroutines with
choice buffers from the TKR-based mpi Fortran module. Thanks to Jed
Brown for raising the issue.
- Only allow the usnic BTL to build on 64 bit platforms.
- Various bug fixes to SLURM support, to include ensuring proper
exiting on abnormal termination.
- Ensure that MPI_COMM_SPAWN[_MULTIPLE] jobs get the same mapping
directives that were used with mpirun.
- Fixed the application of TCP_NODELAY.
- Change the TCP BTL to not warn if a non-existent interface is
ignored.
- Restored the "--bycore" mpirun option for backwards compatibility.
- Fixed debugger attach functionality. Thanks to Ashley Pittman for
reporting the issue and suggesting the fix.
- Fixed faulty MPI_IBCAST when invoked on a communicator with only
one process.
- Add new Mellanox device IDs to the openib BTL.
- Progress towards cleaning up various internal memory leaks as
reported by Valgrind.
- Fixed some annoying flex-generated warnings that have been there for
years. Thanks to Tom Fogal for the initial patch.
- Support user-provided environment variables via the "env" info key
to MPI_COMM_SPAWN[_MULTIPLE]. Thanks to Tom Fogal for the feature
request.
- Fix uninitialized variable in MPI_DIST_GRAPH_CREATE.
- Fix a variety of memory errors on SPARC platforms. Thanks to
Siegmar Gross for reporting and testing all the issues.
- Remove Solaris threads support. When building on Solaris, pthreads
will be used.
- Correctly handle the convertor internal stack for persistent
receives. Thanks to Guillaume Gouaillardet for identifying the
problem.
- Add support for using an external libevent via --with-libevent. See
the README for more details.
- Various OMPIO updates and fixes.
- Add support for the MPIEXEC_TIMEOUT environment variable. If set,
mpirun will terminate the job after this many seconds.
- Update the internal copy of ROMIO to that which shipped in MPICH
3.0.4.
- Various performance tweaks and improvements in the usnic BTL,
including now reporting MPI_T performance variables for each usnic
device.
- Fix to not access send datatypes for non-root processes with
MPI_ISCATTER[V] and MPI_IGATHER[V]. Thanks to Pierre Jolivet for
supplying the initial patch.
- Update VampirTrace to 5.14.4.9.
- Fix ptmalloc2 hook disable when used with ummunotify.
- Change the default connection manager for the openib BTL to be based
on UD verbs data exchanges instead of ORTE OOB data exchanges.
- Fix Fortran compile error when compiling with 8-byte INTEGERs and
4-byte ints.
- Fix C++11 issue identified by Jeremiah Willcock.
- Many changes, updates, and bug fixes to the ORTE run-time layer.
- Correctly handle MPI_REDUCE_SCATTER with recvcounts of 0.
- Update man pages for MPI-3, and add some missing man pages for
MPI-2.x functions.
- Updated mpi_f08 module in accordance with post-MPI-3.0 errata which
basically removed BIND(C) from all interfaces.
- Fixed MPI_IN_PLACE detection for MPI_SCATTER[V] in Fortran
routines. Thanks to Charles Gerlach for identifying the issue.
- Added support for routable RoCE to the openib BTL.
- Update embedded hwloc to v1.7.2.
- ErrMgr framework redesigned to better support fault tolerance development
activities. See the following RFC for details:
http://www.open-mpi.org/community/lists/devel/2010/03/7589.php
- Added database framework to OPAL and changed all modex operations
to flow thru it, also included additional system info in the
available data
- Added staged state machine to support sequential work flows
- Added distributed file system support for accessing files across
nodes that do not have networked file systems
- Extended filem framework to support scalable pre-positioning of
files for use by applications, adding new "raw" component that
transmits files across the daemon network
- Native Windows support has been removed. A cygwin package is
available from that group for Windows-based use.
- Added new MPI Java bindings. See the Javadocs for more details on
the API.
- Wrapper compilers now add rpath support by default to generated
executables on systems that support it. This behavior can be
disabled via --disable-wrapper-rpath. See note in README about ABI
issues when using rpath in MPI applications.
- Added a new parallel I/O component and multiple new frameworks to
support parallel I/O operations.
- Fixed MPI_STATUS_SIZE Fortran issue when used with 8-byte Fortran
INTEGERs and 4-byte C ints. Since this issue affects ABI, it is
only enabled if Open MPI is configured with
--enable-abi-breaking-fortran-status-i8-fix. Thanks to Jim Parker
for supplying the initial patch.
- Add support for Intel Phi SCIF transport.
- For CUDA-aware MPI configured with CUDA 6.0, use new pointer
attribute to avoid extra synchronization in stream 0 when using
CUDA IPC between GPUs on the same node.
- For CUDA-aware MPI configured with CUDA 6.0, compile in support
of GPU Direct RDMA in openib BTL to improve small message latency.
- Updated ROMIO from MPICH v3.0.4.
- MPI-3: Added support for remaining non-blocking collectives.
- MPI-3: Added support for neighborhood collectives.
- MPI-3: Updated C bindings with consistent use of [].
- MPI-3: Added the const keyword to read-only buffers.
- MPI-3: Added support for non-blocking communicator duplication.
- MPI-3: Added support for non-collective communicator creation.
1.7.3
-----
- Make CUDA-aware support dynamically load libcuda.so so CUDA-aware
MPI library can run on systems without CUDA software.
- Fix various issues with dynamic processes and intercommunicator
operations under Torque. Thanks to Suraj Prabhakaran for reporting
the problem.
- Enable support for the Mellanox MXM2 library by default.
- Improve support for Portals 4.
- Various Solaris fixes. Many thanks to Siegmar Gross for his
incredible patience in reporting all the issues.
- MPI-2.2: Add reduction support for MPI_C_*COMPLEX and MPI::*COMPLEX.
- Fixed internal accounting when openpty() fails. Thanks to Michal
Peclo for reporting the issue and providing a patch.
- Fixed too-large memory consumption in XRC mode of the openib BTL.
Thanks to Alexey Ryzhikh for the patch.
- Add bozo check for negative np values to mpirun to prevent a
deadlock. Thanks to Upinder Malhi for identifying the issue.
- Fixed MPI_IS_THREAD_MAIN behavior. Thanks to Lisandro Dalcin for
pointing out the problem.
- Various rankfile fixes.
- Fix functionality over iWARP devices.
- Various memory and performance optimizations and tweaks.
- Fix MPI_Cancel issue identified by Fujitsu.
- Add missing support for MPI_Get_address in the "use mpi" TKR
implementation. Thanks to Hugo Gagnon for identifying the issue.
- MPI-3: Add support for MPI_Count.
- MPI-2.2: Add missing MPI_IN_PLACE support for MPI_ALLTOALL.
- Added new usnic BTL to support the Cisco usNIC device.
- Minor VampirTrace update to 5.14.4.4.
- Removed support for ancient OS X systems (i.e., prior to 10.5).
- Fixed obscure packing/unpacking datatype bug. Thanks to Takahiro
Kawashima for identifying the issue.
- Add run-time support for PMI2 environments.
- Update openib BTL default parameters to include support for Mellanox
ConnectX3-Pro devices.
- Update libevent to v2.0.21.
- "ompi_info --param TYPE PLUGIN" now only shows a small number of MCA
parameters by default. Add "--level 9" or "--all" to see *all* MCA
parameters. See README for more details.
- Add support for asynchronous CUDA-aware copies.
- Add support for Mellanox MPI collective operation offload via the
"hcoll" library.
- MPI-3: Add support for the MPI_T interface. Open MPI's MCA
parameters are now accessible via the MPI_T control variable
interface. Support has been added for a small number of MPI_T
performance variables.
- Add Gentoo memory hooks override. Thanks to Justin Bronder for the
patch.
- Added new "mindist" process mapper, allowing placement of processes
via PCI locality information reported by the BIOS.
- MPI-2.2: Add support for MPI_Dist_graph functionality.
- Enable generic, client-side support for PMI2 implementations. Can
be leveraged by any resource manager that implements PMI2; e.g. SLURM,
versions 2.6 and higher.
1.7.2
-----
- Major VampirTrace update to 5.14.4.2.
(** also appeared: 1.6.5)
- Fix to set flag==1 when MPI_IPROBE is called with MPI_PROC_NULL.
(** also appeared: 1.6.5)
- Set the Intel Phi device to be ignored by default by the openib BTL.
(** also appeared: 1.6.5)
- Decrease the internal memory storage used by intrinsic MPI datatypes
for Fortran types. Thanks to Takahiro Kawashima for the initial
patch.
(** also appeared: 1.6.5)
- Fix total registered memory calculation for Mellanox ConnectIB and
OFED 2.0.
(** also appeared: 1.6.5)
- Fix possible data corruption in the MXM MTL component.
(** also appeared: 1.6.5)
- Remove extraneous -L from hwloc's embedding. Thanks to Stefan
Friedel for reporting the issue.
(** also appeared: 1.6.5)
- Fix contiguous datatype memory check. Thanks to Eric Chamberland
for reporting the issue.
(** also appeared: 1.6.5)
- Make the openib BTL more friendly to ignoring verbs devices that are
not RC-capable.
(** also appeared: 1.6.5)
- Fix some MPI datatype engine issues. Thanks to Thomas Jahns for
reporting the issue.
(** also appeared: 1.6.5)
- Add INI information for Chelsio T5 device.
(** also appeared: 1.6.5)
- Integrate MXM STREAM support for MPI_ISEND and MPI_IRECV, and other
minor MXM fixes.
(** also appeared: 1.6.5)
- Fix to not show amorphous "MPI was already finalized" error when
failing to MPI_File_close an open file. Thanks to Brian Smith for
reporting the issue.
(** also appeared: 1.6.5)
- Add a distance-based mapping component to find the socket "closest"
to the PCI bus.
- Fix an error that caused epoll to automatically be disabled
in libevent.
- Upgrade hwloc to 1.5.2.
- *Really* fixed XRC compile issue in Open Fabrics support.
- Fix MXM connection establishment flow.
- Fixed parallel debugger ability to attach to MPI jobs.
- Fixed some minor memory leaks.
- Fixed datatype corruption issue when combining datatypes of specific
formats.
- Added Location Aware Mapping Algorithm (LAMA) mapping component.
- Fixes for MPI_STATUS handling in corner cases.
- Add a distance-based mapping component to find the socket "closest" to the PCI bus.
1.7.1
-----
- Fixed compile error when --without-memory-manager was specified
on Linux
- Fixed XRC compile issue in Open Fabrics support.
1.7
---
- Added MPI-3 functionality:
- MPI_GET_LIBRARY_VERSION
- Matched probe
- MPI_TYPE_CREATE_HINDEXED_BLOCK
- Non-blocking collectives
- MPI_INFO_ENV support
- Fortran '08 bindings (see below)
- Dropped support for checkpoint/restart due to loss of maintainer :-(
- Enabled compile-time warning of deprecated MPI functions by default
(in supported compilers).
- Revamped Fortran MPI bindings (see the README for details):
- "mpifort" is now the preferred wrapper compiler for Fortran
- Added "use mpi_f08" bindings (for compilers that support it)
- Added better "use mpi" support (for compilers that support it)
- Removed incorrect MPI_SCATTERV interface from "mpi" module that
was added in the 1.5.x series for ABI reasons.
- Lots of VampirTrace upgrades and fixes; upgrade to v5.14.3.
- Modified process affinity system to provide warning when bindings
result in being "bound to all", which is equivalent to not being
bound.
- Removed maffinity, paffinity, and carto frameworks (and associated
MCA params).
- Upgraded to hwloc v1.5.1.
- Added performance improvements to the OpenIB (OpenFabrics) BTL.
- Made malloc hooks more friendly to IO interprosers. Thanks to the
bug report and suggested fix from Darshan maintainer Phil Carns.
- Added support for the DMTCP checkpoint/restart system.
- Added support for the Cray uGNI interconnect.
- Fixed header file problems on OpenBSD.
- Fixed issue with MPI_TYPE_CREATE_F90_REAL.
- Wrapper compilers now explicitly list/link all Open MPI libraries if
they detect static linking CLI arguments.
- Open MPI now requires a C99 compiler to build. Please upgrade your
C compiler if you do not have a C99-compliant compiler.
- Fix MPI_GET_PROCESSOR_NAME Fortran binding to set ierr properly.
Thanks to LANL for spotting the error.
- Many MXM and FCA updates.
- Fixed erroneous free of putenv'ed string that showed up in Valgrind
reports.
- Fixed MPI_IN_PLACE case for MPI_ALLGATHER.
- Fixed a bug that prevented MCA params from being forwarded to
daemons upon launch.
- Fixed issues with VT and CUDA --with-cuda[-libdir] configuration CLI
parameters.
- Entirely new implementation of many MPI collective routines focused
on better performance.
- Revamped autogen / build system.
- Add new sensor framework to ORTE that includes modules for detecting
stalled applications and processes that consume too much memory.
- Added new state machine framework to ORTE that converts ORTE into an
event-driven state machine using the event library.
- Added a new MCA parameter (ess_base_stream_buffering) that allows the user
to override the system default for buffering of stdout/stderr streams
(via setvbuf). Parameter is not visible via ompi_info.
- Revamped the launch system to allow consideration of node hardware
in assigning process locations and bindings.
- Added the -novm option to preserve the prior launch behavior.
- Revamped the process mapping system to utilize node hardware by adding
new map-by, rank-by, and bind-to cmd line options.
- Added new MCA parameter to provide protection against IO forwarding
backlog.
- Dropped support for native Windows due to loss of maintainers. :-(
- Added a new parallel I/O component and multiple new frameworks to
support parallel I/O operations.
- Fix typo in orte_setup_hadoop.m4. Thanks to Aleksej Saushev for
reporting it
- Fix a very old error in opal_path_access(). Thanks to Marco Atzeri
for chasing it down.
1.6.5
-----
- Updated default SRQ parameters for the openib BTL.
(** also to appear: 1.7.2)
- Major VampirTrace update to 5.14.4.2.
(** also to appear: 1.7.2)
- Fix to set flag==1 when MPI_IPROBE is called with MPI_PROC_NULL.
(** also to appear: 1.7.2)
- Set the Intel Phi device to be ignored by default by the openib BTL.
(** also to appear: 1.7.2)
- Decrease the internal memory storage used by intrinsic MPI datatypes
for Fortran types. Thanks to Takahiro Kawashima for the initial
patch.
(** also to appear: 1.7.2)
- Fix total registered memory calculation for Mellanox ConnectIB and
OFED 2.0.
(** also to appear: 1.7.2)
- Fix possible data corruption in the MXM MTL component.
(** also to appear: 1.7.2)
- Remove extraneous -L from hwloc's embedding. Thanks to Stefan
Friedel for reporting the issue.
(** also to appear: 1.7.2)
- Fix contiguous datatype memory check. Thanks to Eric Chamberland
for reporting the issue.
(** also to appear: 1.7.2)
- Make the openib BTL more friendly to ignoring verbs devices that are
not RC-capable.
(** also to appear: 1.7.2)
- Fix some MPI datatype engine issues. Thanks to Thomas Jahns for
reporting the issue.
(** also to appear: 1.7.2)
- Add INI information for Chelsio T5 device.
(** also to appear: 1.7.2)
- Integrate MXM STREAM support for MPI_ISEND and MPI_IRECV, and other
minor MXM fixes.
(** also to appear: 1.7.2)
- Improved alignment for OpenFabrics buffers.
- Fix to not show amorphous "MPI was already finalized" error when
failing to MPI_File_close an open file. Thanks to Brian Smith for
reporting the issue.
(** also to appear: 1.7.2)
The find-prefix infrastructure was required in a pkgviews world where
packages installed from pkgsrc could have different installation
prefixes, and this was a way for a dependency prefix to be determined.
Now that pkgviews has been removed there is no longer any need for the
overhead of this infrastructure. Instead we use BUILDLINK_PREFIX.pkg
for dependencies pulled in via buildlink, or LOCALBASE/PREFIX where the
dependency is coming from pkgsrc.
Provides a reasonable performance win due to the reduction of `pkg_info
-qp` calls, some of which were redundant anyway as they were duplicating
the same information provided by BUILDLINK_PREFIX.pkg.
pkgsrc changes: stop regenerating build system
and drop build-time dependency on autotools.
Version 1.11.1
--------------
* Detection fixes
+ Hardwire the topology of Fujitsu K-computer, FX10, FX100 servers to
workaround buggy Linux kernels.
Thanks to Takahiro Kawashima and Gilles Gouaillardet.
+ Fix L3 cache information on AMD Opteron 61xx Magny-Cours processors
in the x86 backend. Thanks to Guillaume Beauchamp for the patch.
+ Detect block devices directly attached to PCI without a controller,
for instance NVMe disks. Thanks to Barry M. Tannenbaum.
+ Add the PCISlot attribute to all PCI functions instead of only the
first one.
* Miscellaneous internal fixes
+ Ignore PCI bridges that could fail assertions by reporting buggy
secondary-subordinate bus numbers
Thanks to George Bosilca for reporting the issue.
+ Fix an overzealous assertion when inserting an intermediate Group object
while Groups are totally ignored.
+ Fix a memory leak on Linux on AMD processors with dual-core compute units.
Thanks to Bob Benner.
+ Fix a memory leak on failure to load a xml diff file.
+ Fix some segfaults when inputting an invalid synthetic description.
+ Fix a segfault when plugins fail to find core symbols.
Thanks to Guy Streeter.
* Many fixes and improvements in the Windows backend:
+ Fix the discovery of more than 32 processors and multiple processor
groups. Thanks to Barry M. Tannenbaum for the help.
+ Add thread binding set support in case of multiple process groups.
+ Add thread binding get support.
+ Add get_last_cpu_location() support for the current thread.
+ Disable the unsupported process binding in case of multiple processor
groups.
+ Fix/update the Visual Studio support under contrib/windows.
Thanks to Eloi Gaudry for the help.
* Tools fixes
+ Fix a segfault when displaying logical indexes in the graphical lstopo.
Thanks to Guillaume Mercier for reporting the issue.
+ Fix lstopo linking with X11 libraries, for instance on Mac OS X.
Thanks to Scott Atchley and Pierre Ramet for reporting the issue.
+ hwloc-annotate, hwloc-diff and hwloc-patch do not drop unavailable
resources from the output anymore and those may be annotated as well.
+ Command-line tools may now import XML from the standard input with -i -.xml
+ Add missing documentation for the hwloc-info --no-icaches option.
Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden). Existing SHA1
digests retained for now as an audit trail.
From Benedek Gergely on pkgsrc-users.
Version 1.11.1
--------------
* hwloc-annotate does not drop unavailable resources from the output anymore
and those may be annotated as well.
* Fix an overzealous assertion when intermediate Group object while Groups
are totally ignored.
* Fix a memory leak on failure to load a xml diff file.
* Fix some segfaults when inputting an invalid synthetic description.
Version 1.11.0
--------------
* API
+ Socket objects are renamed into Package to align with the terminology
used by processor vendors. The old HWLOC_OBJ_SOCKET type and "Socket"
name are still supported for backward compatibility.
+ HWLOC_OBJ_NODE is replaced with HWLOC_OBJ_NUMANODE for clarification.
HWLOC_OBJ_NODE is still supported for backward compatibility.
"Node" and "NUMANode" strings are supported as in earlier releases.
* Detection improvements
+ Add support for Intel Knights Landing Xeon Phi.
Thanks to Grzegorz Andrejczuk and Lukasz Anaczkowski.
+ Add Vendor, Model, Revision, SerialNumber, Type and LinuxDeviceID
info attributes to Block OS devices on Linux. Thanks to Vineet Pedaballe
for the help.
- Add --disable-libudev to avoid dependency on the libudev library.
+ Add "MemoryDevice" Misc objects with information about DIMMs, on Linux
when privileged and when I/O is enabled.
Thanks to Vineet Pedaballe for the help.
+ Add a PCISlot attribute to PCI devices on Linux when supported to
identify the physical PCI slot where the board is plugged.
+ Add CPUStepping info attribute on x86 processors,
thanks to Thomas Röhl for the suggestion.
+ Ignore the device-tree on non-Power architectures to avoid buggy
detection on ARM. Thanks to Orion Poplawski for reporting the issue.
+ Work-around buggy Xeon E5v3 BIOS reporting invalid PCI-NUMA affinity
for the PCI links on the second processor.
+ Add support for CUDA compute capability 5.x, thanks Benjamin Worpitz.
+ Many fixes to the x86 backend
- Add L1i and fix L2/L3 type on old AMD processors without topoext support.
- Fix Intel CPU family and model numbers when basic family isn't 6 or 15.
- Fix package IDs on recent AMD processors.
- Fix misc issues due to incomplete APIC IDs on x2APIC processors.
- Avoid buggy discovery on old SGI Altix UVs with non-unique APIC IDs.
+ Gather total machine memory on NetBSD.
* Tools
+ lstopo
- Collapse identical PCI devices unless --no-collapse is given.
This avoids gigantic outputs when a PCI device contains dozens of
identical virtual functions.
- The ASCII art output is now called "ascii", for instance in
"lstopo -.ascii".
The former "txt" extension is retained for backward compatibility.
- Automatically scales graphical box width to the inner text in Cairo,
ASCII and Windows outputs.
- Add --rect to lstopo to force rectangular layout even for NUMA nodes.
- Add --restrict-flags to configure the behavior of --restrict.
- Objects may have a "Type" info attribute to specify a better type name
and display it in lstopo.
- Really export all verbose information to the given output file.
+ hwloc-annotate
- May now operate on all types of objects, including I/O.
- May now insert Misc objects in the topology.
- Do not drop instruction caches and I/O devices from the output anymore.
+ Fix lstopo path in hwloc-gather-topology after install.
* Misc
+ Fix hwloc/cudart.h for machines with multiple PCI domains,
thanks to Imre Kerr for reporting the problem.
+ Fix PCI Bridge-specific depth attribute.
+ Fix hwloc_bitmap_intersect() for two infinite bitmaps.
+ Fix some corner cases in the building of levels on large NUMA machines
with non-uniform NUMA groups and I/Os.
+ Improve the performance of object insertion by cpuset for large
topologies.
+ Prefix verbose XML import errors with the source name.
+ Improve pkg-config checks and error messages.
+ Fix excluding after a component with an argument in the HWLOC_COMPONENTS
environment variable.
* Documentation
+ Fix the recommended way in documentation and examples to allocate memory
on some node, it should use HWLOC_MEMBIND_BIND.
Thanks to Nicolas Bouzat for reporting the issue.
+ Add a "Miscellaneous objects" section in the documentation.
+ Add a FAQ entry "What happens to my topology if I disable symmetric
multithreading, hyper-threading, etc. ?" to the documentation.
Version 1.10.1
--------------
* Actually remove disallowed NUMA nodes from nodesets when the whole-system
flag isn't enabled.
* Fix the gathering of PCI domains. Thanks to James Custer for reporting
the issue and providing a patch.
* Fix the merging of identical parent and child in presence of Misc objects.
Thanks to Dave Love for reporting the issue.
* Fix some misordering of children when merging with ignore_keep_structure()
in partially allowed topologies.
* Fix an overzealous assertion in the debug code when running on a single-PU
host with I/O. Thanks to Thomas Van Doren for reporting the issue.
* Don't forget to setup NUMA node object nodesets in x86 backend (for BSDs)
and OSF/Tru64 backend.
* Fix cpuid-x86 build error with gcc -O3 on x86-32. Thanks to Thomas Van Doren
for reporting the issue.
* Fix support for future very large caches in the x86 backend.
* Fix vendor/device names for SR-IOV PCI devices on Linux.
* Fix an unlikely crash in case of buggy hierarchical distance matrix.
* Fix PU os_index on some AIX releases. Thanks to Hendryk Bockelmann and
Erik Schnetter for helping debugging.
* Fix hwloc_bitmap_isincluded() in case of infinite sets.
* Change hwloc-ls.desktop into a lstopo.desktop and only install it if
lstopo is built with Cairo/X11 support. It cannot work with a non-graphical
lstopo or hwloc-ls.
* Add support for the renaming of Socket into Package in future releases.
* Add support for the replacement of HWLOC_OBJ_NODE with HWLOC_OBJ_NUMANODE
in future releases.
* Clarify the documentation of distance matrices in hwloc.h and in the manpage
of the hwloc-distances. Thanks to Dave Love for the suggestion.
* Improve some error messages by displaying more information about the
hwloc library in use.
* Document how to deal with the ABI break when upgrading to the upcoming 2.0
See "How do I handle ABI breaks and API upgrades ?" in the FAQ.
Version 1.10.0
--------------
* API
+ Add hwloc_topology_export_synthetic() to export a topology to a
synthetic string without using lstopo. See the Synthetic topologies
section in the documentation.
+ Add hwloc_topology_set/get_userdata() to let the application save
a private pointer in the topology whenever it needs a way to find
its own object corresponding to a topology.
+ Add hwloc_get_numanode_obj_by_os_index() and document that this function
as well as hwloc_get_pu_obj_by_os_index() are good at converting
nodesets and cpusets into objects.
+ hwloc_distrib() does not ignore any objects anymore when there are
too many of them. They get merged with others instead.
Thanks to Tim Creech for reporting the issue.
* Tools
+ hwloc-bind --get <command-line> now executes the command after displaying
the binding instead of ignoring the command entirely.
Thanks to John Donners for the suggestion.
+ Clarify that memory sizes shown in lstopo are local by default
unless specified (total memory added in the root object).
* Synthetic topologies
+ Synthetic topology descriptions may now specify attributes such as
memory sizes and OS indexes. See the Synthetic topologies section
in the documentation.
+ lstopo now exports in this fully-detailed format by default.
The new option --export-synthetic-flags may be used to revert
back the old format.
* Documentation
+ Add the doc/examples/ subdirectory with several real-life examples,
including the already existing hwloc-hello.C for basics.
Thanks to Rob Aulwes for the suggestion.
+ Improve the documentation of CPU and memory binding in the API.
+ Add a FAQ entry about operating system errors, especially on AMD
platforms with buggy cache information.
+ Add a FAQ entry about loading many topologies in a single program.
* Misc
+ Work around buggy Linux kernels reporting 2 sockets instead
1 socket with 2 NUMA nodes for each Xeon E5 v3 (Haswell) processor.
+ pciutils/libpci support is now removed since libpciaccess works
well and there's also a Linux-specific PCI backend. For the record,
pciutils was GPL and therefore disabled by default since v1.6.2.
+ Add --disable-cpuid configure flag to work around buggy processor
simulators reporting invalid CPUID information.
Thanks for Andrew Friedley for reporting the issue.
+ Fix a racy use of libltdl when manipulating multiple topologies in
different threads.
Thanks to Andra Hugo for reporting the issue and testing patches.
+ Fix some build failures in private/misc.h.
Thanks to Pavan Balaji and Ralph Castain for the reports.
+ Fix failures to detect X11/Xutil.h on some Solaris platforms.
Thanks to Siegmar Gross for reporting the failure.
+ The plugin ABI has changed, this release will not load plugins
built against previous hwloc releases.
Version 1.9.1
-------------
* Fix a crash when the PCI locality is invalid. Attach to the root object
instead. Thanks to Nicolas Denoyelle for reporting the issue.
* Fix -f in lstopo manpage. Thanks to Jirka Hladky for reporting the issue.
* Fix hwloc_obj_type_sscanf() and others when strncasecmp() is not properly
available. Thanks to Nick Papior Andersen for reporting the problem.
* Mark Linux file descriptors as close-on-exec to avoid leaks on exec.
* Fix some minor memory leaks.
Version 1.9.0
-------------
* API
+ Add hwloc_obj_type_sscanf() to extend hwloc_obj_type_of_string() with
type-specific attributes such as Cache/Group depth and Cache type.
hwloc_obj_type_of_string() is moved to hwloc/deprecated.h.
+ Add hwloc_linux_get_tid_last_cpu_location() for retrieving the
last CPU where a Linux thread given by TID ran.
+ Add hwloc_distrib() to extend the old hwloc_distribute[v]() functions.
hwloc_distribute[v]() is moved to hwloc/deprecated.h.
+ Don't mix total and local memory when displaying verbose object attributes
with hwloc_obj_attr_snprintf() or in lstopo.
* Backends
+ Add CPUVendor, CPUModelNumber and CPUFamilyNumber info attributes for
x86, ia64 and Xeon Phi sockets on Linux, to extend the x86-specific
support added in v1.8.1. Requested by Ralph Castain.
+ Add many CPU- and Platform-related info attributes on ARM and POWER
platforms, in the Machine and Socket objects.
+ Add CUDA info attributes describing the number of multiprocessors and
cores and the size of the global, shared and L2 cache memories in CUDA
OS devices.
+ Add OpenCL info attributes describing the number of compute units and
the global memory size in OpenCL OS devices.
+ The synthetic backend now accepts extended types such as L2Cache, L1i or
Group3. lstopo also exports synthetic strings using these extended types.
* Tools
+ lstopo
- Do not overwrite output files by default anymore.
Pass -f or --force to enforce it.
- Display OpenCL, CUDA and Xeon Phi numbers of cores and memory sizes
in the graphical output.
- Fix export to stdout when specifying a Cairo-based output type
with --of.
+ hwloc-ps
- Add -e or --get-last-cpu-location to report where processes/threads
run instead of where they are bound.
- Report locations as likely-more-useful objects such as Cores or Sockets
instead of Caches when possible.
+ hwloc-bind
- Fix failure on Windows when not using --pid.
- Add -e as a synonym to --get-last-cpu-location.
+ hwloc-distrib
- Add --reverse to distribute using last objects first and singlify
into last bits first. Thanks to Jirka Hladky for the suggestion.
+ hwloc-info
- Report unified caches when looking for data or instruction cache
ancestor objects.
* Misc
+ Add experimental Visual Studio support under contrib/windows.
Thanks to Eloi Gaudry for his help and for providing the first draft.
+ Fix some overzealous assertions and warnings about the ordering of
objects on a level with respect to cpusets. The ordering is only
guaranteed for complete cpusets (based on the first bit in sets).
+ Fix some memory leaks when importing xml diffs and when exporting a
"too complex" entry.
Version 1.8.1
-------------
* Fix the cpuid code on Windows 64bits so that the x86 backend gets
enabled as expected and can populate CPU information.
Thanks to Robin Scher for reporting the problem.
* Add CPUVendor/CPUModelNumber/CPUFamilyNumber attributes when running
on x86 architecture. Thanks to Ralph Castain for the suggestion.
* Work around buggy BIOS reporting duplicate NUMA nodes on Linux.
Thanks to Jeff Becker for reporting the problem and testing the patch.
* Add a name to the lstopo graphical window. Thanks to Michael Prokop
for reporting the issue.
Version 1.8.0
-------------
* New components
+ Add the "linuxpci" component that always works on Linux even when
libpciaccess and libpci aren't available (and even with a modified
file-system root). By default the old "pci" component runs first
because "linuxpci" lacks device names (obj->name is always NULL).
* API
+ Add the topology difference API in hwloc/diff.h for manipulating
many similar topologies.
+ Add hwloc_topology_dup() for duplicating an entire topology.
+ hwloc.h and hwloc/helper.h have been reorganized to clarify the
documentation sections. The actual inline code has moved out of hwloc.h
into the new hwloc/inlines.h.
+ Deprecated functions are now in hwloc/deprecated.h, and not in the
official documentation anymore.
* Tools
+ Add hwloc-diff and hwloc-patch tools together with the new diff API.
+ Add hwloc-compress-dir to (de)compress an entire directory of XML files
using hwloc-diff and hwloc-patch.
+ Object colors in the graphical output of lstopo may be changed by adding
a "lstopoStyle" info attribute. See CUSTOM COLORS in the lstopo(1) manpage
for details. Thanks to Jirka Hladky for discussing the idea.
+ hwloc-gather-topology may now gather I/O-related files on Linux when
--io is given. Only the linuxpci component supports discovering I/O
objects from these extended tarballs.
+ hwloc-annotate now supports --ri to remove/replace info attributes with
a given name.
+ hwloc-info supports "root" and "all" special locations for dumping
information about the root object.
+ lstopo now supports --append-legend to append custom lines of text
to the legend in the graphical output. Thanks to Jirka Hladky for
discussing the idea.
+ hwloc-calc and friends have a more robust parsing of locations given
on the command-line and they report useful error messages about it.
+ Add --whole-system to hwloc-bind, hwloc-calc, hwloc-distances and
hwloc-distrib, and add --restrict to hwloc-bind for uniformity among
tools.
* Misc
+ Calling hwloc_topology_load() or hwloc_topology_set_*() on an already
loaded topology now returns an error (deprecated since release 1.6.1).
+ Fix the initialisation of cpusets and nodesets in Group objects added
when inserting PCI hostbridges.
+ Never merge Group objects that were added explicitly by the user with
hwloc_custom_insert_group_object_by_parent().
+ Add a sanity check during dynamic plugin loading to prevent some
crashes when hwloc is dynamically loaded by another plugin mechanisms.
+ Add --with-hwloc-plugins-path to specify the install/load directories
of plugins.
+ Add the MICSerialNumber info attribute to the root object when running
hwloc inside a Xeon Phi to match the same attribute in the MIC OS device
when running in the host.
Version 1.7.2
-------------
* Do not create invalid block OS devices on very old Linux kernel such
as RHEL4 2.6.9.
* Fix PCI subvendor/device IDs.
* Fix the management of Misc objects inserted by parent.
Thanks to Jirka Hladky for reporting the problem.
* Add a Port<n>State into attribute to OpenFabrics OS devices.
* Add a MICSerialNumber info attribute to Xeon PHI/MIC OS devices.
* Improve verbose error messages when failing to load from XML.
reported in PR 49080. I did look in the package configury to figure
out which ones were mutually connected, but I may have gotten it
wrong as there's a monumental maze of m4 autotoolery.
---------------------
- Now compiles on GNU/kFreeBSD
- Pool: `AF_PIPE` address fixed so that it works on recent Windows versions
in combination with Python 2.7.7.
- Pool: Fix for `Supervisor object has no attribute _children` error.
- Pool: Fixed bug with human_status(None).
- Pool: shrink did not work properly if asked to remove more than 1 process.
mk-configure>=0.27.0 is required for build.
Option -X was introduced to paexec(1) for ignoring
calculator's stdout.
PAEXEC_ENV environment variable sets a list of variables passed to
the calculator.
PAEXEC_TRANSPORT environment variable sets the transport unless
option -t was applied.
PAEXEC_NODES environment variable sets the nodes unless
option -n was applied.
pareorder(1) is a synonym for paexec_reorder(1)
Do it for all packages that
* mention perl, or
* have a directory name starting with p5-*, or
* depend on a package starting with p5-
like last time, for 5.18, where this didn't lead to complaints.
Let me know if you have any this time.
This seems to have been fixed in a previous version. At least "import
billiard" works from the interpreter. From CHANGES.txt:
- Fixes SemLock on Python 3.4 (Issue #107) when using
``forking_enable(False)``.
- Pool: Include more useful exitcode information when processes exit.
1) The shared library isn't installed with py33. The package uses a pure
python implementation;
2) The connection and reduction functions are installed in different
directory names depending on python major version. From CHANGES.txt:
3.3.0.16 - 2014-02-11
---------------------
- Previous release was missing the billiard.py3 package from MANIFEST
so the installation would not work on Python 3.
3.3.0.15 - 2014-02-10
---------------------
- Pool: Fixed "cannot join process not started" error.
- Now uses billiard.py2 and billiard.py3 specific packages that are installed
depending on the python version used.
This way the installation will not import version specific modules (and
possibly crash).
3.3.0.14 - 2014-01-17
---------------------
- Fixed problem with our backwards compatible ``bytes`` wrapper
(Issue #103).
- No longer expects frozen applications to have a valid ``__file__``
attribute.
Version 8.1.6
-------------
* Bug fixes
Version 8.1.5
-------------
* Bug fixes
Version 8.1.4
-------------
Milestone version: over 1000 patches since the last from Sun
* Bug fixes
* Enhancements
* qacct: print category information; support -A like -P ; make
-u a synonym for -o; -E selects on job end times read from
standard input with -f
* Move manager/operator setup in startup scripts
* Installation creates an environment modules file
* Add monitor_qmaster.sh script
* Write shepherd panic messages to syslog, not into /tmp
* Add .desktop file for qmon
* rpm/dpkg packaging allows building against motif (recent Debian/Fedora)
* Accounting reports qmaster-enforced resource limits (only on master PE
task if accounting_summary is false)
* Add "smp" to the default queue PE list
* install_execd doesn't check the presence of (mostly irrelevant) binaries
* Add configuration for logcheck
* Potentially incompatible changes
* renew_all_certs.ksh re-named to renew_all_certs.sh
* Expand $ja_task_id to 0 for non-array jobs
* Move manager/operator setup in startup scripts
* For security reasons, installation defaults for min_uid, min_gid in
sge_conf(5) are now 100 without CSP. See
<http://arc.liv.ac.uk/SGE/howto/sge-security.html>
* RPM layout changed to put relevant ones under noarch (on RHEL6 and
recent Fedora), with a separate guiinst package
* Memory values can be input and output in TB or tB (possible
incompatibility parsing output)
* Reduce execd CPU time reading large smaps files from Linux /proc and
provide USE_SMAPS in execd_params to turn it on (default now off
because huge smaps are generated by some programs)
* Remove redundant -verify option from qsh, qlogin (per doc)
Version 8.1.3
-------------
* Bug fixes
* Enhancements
* Document Interix building explicitly
* qstat reports array task maximum concurrency
* qstatus removes [] suffix for non-array jobs if -t was requested
* Read /etc/default/{sgeexecd,sgemaster} to allow customizing rc scripts
* Location of daemon pid files can be specified with SGE_QMASTER_PIDFILE,
SGE_EXECD_PIDFILE
* Debian packaging (as an add-on, installing into /opt/sge)
* Expand $sge_root and $sge_cell in the definitions of prolog and
similar methods
* Check in init script that shepherd will load
* Add lx-armhf architecture
* On Linux and NetBSD, report jobs' virtual memory usage as accurately
as possible
* Add -nobincheck installation option to avoid checking binaries
* Add some build hooks, useful for Debian particularly.
* Potentially incompatible changes
* qacct prints units (might affect parsing the output)
* Correct spelling of "comunication_error" in qstat XML error output
* Fix problems submitting to ARs (printing times now doesn't use
a days field in qstat etc.)
* Java version >= 1.5 required
* Lower default MAX_DYN_EC somewhat to avoid warning on typical Linux
configurations
* Other changes
* Don't install the ckpt directory (contents obsolete)
Version 8.1.2
-------------
* Bug fixes
* Enhancements
* Use cpusets for process containment on fairly recent Linux-based systems
(see USE_CGROUPS in sge_conf(5))
* Add bootstrap build script
* Make SGE template an RPM conf file
* Incompatible changes
* Make CRL and certificate expiry consistent
Version 8.1.1
-------------
* Bug fixes
* Security
* Don't pass any user environment to remote startup daemons -- better
fix for half of CVE-2012-0208
* Enhancements
* SGE_BINDING is set in the environment for all types of binding
* New jobstats(1) provides historical job summary
* Berkeleydb spools can optionally be opened "private" to allow
operation on NFS3 filesystems. Currently no installer support, but
see bootstrap(5) and the health warning
* Environment variable SGE_DRMAA_ALLOW_JOB_ERROR_STATE allows DRMAA
jobs to enter the error state; see drmaa_submit(3)
* Define SGE_JOBEXIT_STAT environment variable in epilog; see submit(1)
* The user from which mail is sent can be configured in sge_conf(5)
* Topology items are now static load values; see load_parameters(5)
* qstat now prints array job dependency info
* Default to support for qsort_args in sge_pe(5)
* Include an example of logrotate usage
* Install an "smp" PE
* Distribute/document sge_share_mon(1) to print share tree
* Improve install template defaults
* GPU load sensor (dist/util/resources/loadsensors/gpu-loadsensor.c)
* Allow building Kerberos/GSSAPI security modules against Heimdal
(but GSS is still not properly usable)
* Support arm and mipsel on GNU/Linux, completing the set
of official Debian Linux-based ports
* Support for OpenBSD (untested)
* Preliminary support for Cygwin: everything builds, clients work
(lightly tested), daemons need fixing
* Add ja_task_id to expandable variables in ckpt_command and similar
methods
* distinst supports installation with install(1) for use with -local
* Incompatible changes
* The CA directory is now /var/lib/sgeCA instead of /var/sgeCA
but installation will offer to move it [fixme]
* Drop (any pretence at) support for Cray/Unicos, NEC SX, Darwin 6
* The spool format for parallel job tasks has changed from any previous
version built with qsort_args (as above), which will make live
upgrades from such a version fail on nodes running parallel jobs
* Other changes
* Extensive internal changes to improve robustness, e.g. of
string-handling against buffer overruns -- somewhat error-prone
and may have caused regressions; more required
* Install script allows rsh et al to be omitted from binary distribution
in favour of ssh
Version 8.1.0
-------------
* Security fix
* Prevent users other than root deleting entries with sgepasswd
* Version numbering
* Switch to a more logical numbering scheme now that the Univa
baseline is irrelevant
* Bug fixes
* Other changes
* Hadoop support now for a more recent Hadoop distribution (see
README.BUILD)
Version 8.0.0e
--------------
Mostly build and security issues
* Bug fixes
* Security fixes
The first fix is for a trivial remote root by a valid user. The
others, including fixes for potential buffer overruns in daemon and
setuid programs, may or may not be exploitable.
* Sanitize the environment before executing remote startup programs etc.
Somewhat incompatible: LD_LIBRARY_PATH etc. may need to be set
differently. See the security notes in remote_startup(5) and
sge_conf(5). (CVE-2012-0208, thanks to William Hay)
* Don't write initial log messages in /tmp. Somewhat
incompatible: initial messages now in syslog.
* Avoid using mktemp. (Probably not a significant problem.)
* Control core dumps under setuid etc. with SGE_ENABLE_COREDUMP.
(Not normally a security issue.)
* Bounds checking in replace_params
* Avoid execd crash and possible overruns
* Fixes for buffer overrun and other improvements for (setuid
program) sgepasswd
dsh is an implementation of a wrapper for executing multiple remote shell
(rsh/remsh/ssh) commands. rsh/remsh/ssh are wrappers for executing shell
(ksh/bash/zsh/tcsh/sh .. etc... ) on remote hosts.
PLIST. From ChangeLog:
3.3.0.13 - 2013-12-13
---------------------
- Fixes compatability with Python < 2.7.6
- No longer attempts to handle ``SIGBUS``
- Non-thread based pool now only handles signals:
``SIGHUP``, ``SIGQUIT``, ``SIGTERM``, ``SIGUSR1``,
``SIGUSR2``.
- setup.py: Only show compilation warning for build related commands.
3.3.0.12 - 2013-12-09
---------------------
- Fixed installation for Python 3.
- Pool: Fixed bug with maxtasksperchild.
- Pool: Fixed bug in maintain_pool.
3.3.0.11 - 2013-12-03
---------------------
- Fixed Unicode error when installing the distribution (Issue #89).
- Daemonic processes are now allowed to have children.
But note that it will not be possible to automatically
terminate them when the process exits.
- Pool: Would not always be able to detect that a process exited.
3.3.0.10 - 2013-12-02
---------------------
- Windows: Fixed problem with missing ``WAITABANDONED_0``
- Windows: PipeConnection can now be inherited.
3.3.0.9 - 2013-12-02
--------------------
- Temporary workaround for Celery maxtasksperchild issue.
3.3.0.8 - 2013-11-21
--------------------
- Now also sets ``multiprocessing.current_process`` for compatibility
with loggings ``processName`` field.
3.3.0.7 - 2013-11-15
--------------------
- Fixed compatibility with PyPy 2.1 + 2.2.
- Fixed problem in pypy detection.
- Now uses ``ctypes.find_library`` instead of hardcoded path to find
the OS X CoreServices framework.
3.3.0.6 - 2013-11-12
--------------------
- Now works without C extension again.
- New ``_billiard.read(fd, buffer, [len, ])` function
implements os.read with buffer support (new buffer API)
- New pure-python implementation of ``Connection.send_offset``.
3.3.0.5 - 2013-11-11
--------------------
- All platforms except for Windows/PyPy/Jython now requires the C extension.
3.3.0.4 - 2013-11-11
--------------------
- Fixed problem with Python3 and setblocking.
3.3.0.3 - 2013-11-09
--------------------
- Now works on Windows again.
3.3.0.2 - 2013-11-08
--------------------
- ApplyResult.terminate() may be set to signify that the job
must not be executed. It can be used in combination with
Pool.terminate_job.
- Pipe/_SimpleQueue: Now supports rnonblock/wnonblock arguments
to set the read or write end of the pipe to be nonblocking.
- Pool: Log message included exception info but exception happened
in another process so the resulting traceback was wrong.
- Pool: Worker process can now prepare results before they are sent
back to the main process (using ``Worker.prepare_result``).
3.3.0.1 - 2013-11-04
--------------------
- Pool: New ``correlation_id`` argument to ``apply_async`` can be
used to set a related id for the ``ApplyResult`` object returned:
>>> r = pool.apply_async(target, args, kwargs, correlation_id='foo')
>>> r.correlation_id
'foo'
- Pool: New callback `on_process_exit` is called when a pool
process exits, with signature ``(pid, exitcode)``.
- Pool: Improved the too many restarts detection.
3.3.0.0 - 2013-10-14
--------------------
- Dual code base now runs on Python 2.6+ and Python 3.
- No longer compatible with Python 2.5
- Includes many changes from multiprocessing in 3.4.
- Now uses ``time.monotonic`` when available, also including
fallback implementations for Linux and OS X.
- No longer cleans up after receiving SIGILL, SIGSEGV or SIGFPE
- ``Finalize`` and ``register_after_fork`` is now aliases to multiprocessing.
It's better to import these from multiprocessing directly now
so that there aren't multiple registries.
- New `billiard.queues._SimpleQueue` that does not use semaphores.
- Pool: Can now be extended to support using multiple IPC queues.
- Pool: Can now use async I/O to write to pool IPC queues.
- Pool: New ``Worker.on_loop_stop`` handler can be used to add actions
at pool worker process shutdown.
Note that, like all finalization handlers, there is no guarantee that
this will be executed.
Based on work of Jason Bacon published in WIP.
* Changes in Slurm 2.6.4
========================
-- Fixed sh5util to print its usage.
-- Corrected commit f9a3c7e4e8ec.
-- Honor ntasks-per-node option with exclusive node allocations.
-- sched/backfill - Prevent invalid memory reference if bf_continue option is
configured and slurm is reconfigured during one of the sleep cycles or if
there are any changes to the partition configuration or if the normal
scheduler runs and starts a job that the backfill scheduler is actively
working on.
-- Update man pages information about acct-freq and JobAcctGatherFrequency
to reflect only the latest supported format.
-- Minor document update to include note about PrivateData=Usage for the
slurm.conf when using the DBD.
-- Expand information reported with DebugFlags=backfill.
-- Initiate jobs pending to run in a reservation as soon as the reservation
becomes active.
-- Purged expired reservation even if it has pending jobs.
-- Corrections to calculation of a pending job's expected start time.
-- Remove some vestigial logic treating job priority of 1 as a special case.
-- Memory freeing up to avoid minor memory leaks at close of daemons
-- Updated documentation to give correct units being displayed.
-- Report AccountingStorageBackupHost with "scontrol show config".
-- init scripts ignore quotes around Pid file name specifications.
-- Fixed typo about command case in quickstart.html.
-- task/cgroup - handle new cpuset files, similar to commit c4223940.
-- Replace the tempname() function call with mkstemp().
-- Fix for --cpu_bind=map_cpu/mask_cpu/map_ldom/mask_ldom plus
--mem_bind=map_mem/mask_mem options, broken in 2.6.2.
-- Restore default behavior of allocating cores to jobs on a cyclic basis
across the sockets unless SelectTypeParameters=CR_CORE_DEFAULT_DIST_BLOCK
or user specifies other distribution options.
-- Enforce JobRequeue configuration parameter on node failure. Previously
always requeued the job.
-- acct_gather_energy/ipmi - Add delay before retry on read error.
-- select/cons_res with GRES and multiple threads per core, fix possible
infinite loop.
-- proctrack/cgroup - Add cgroup create retry logic in case one step is
starting at the same time as another step is ending and the logic to create
and delete cgroups overlaps.
-- Improve setting of job wait "Reason" field.
-- Correct sbatch documentation and job_submit/pbs plugin "%j" is job ID,
not "%J" (which is job_id.step_id).
-- Improvements to sinfo performance, especially for large numbers of
partitions.
-- SlurmdDebug - Permit changes to slurmd debug level with "scontrol reconfig"
-- smap - Avoid invalid memory reference with hidden nodes.
-- Fix sacctmgr modify qos set preempt+/-=.
-- BLUEGENE - fix issue where node count wasn't set up correctly when srun
preforms the allocation, regression in 2.6.3.
-- Add support for dependencies of job array elements (e.g.
"sbatch --depend=afterok:123_4 ...") or all elements of a job array (e.g.
"sbatch --depend=afterok:123 ...").
-- Add support for new options in sbatch qsub wrapper:
-W block=true (wait for job completion)
Clear PBS_NODEFILE environment variable
-- Fixed the MaxSubmitJobsPerUser limit in QOS which limited submissions
a job too early.
-- sched/wiki, sched/wiki2 - Fix to work with change logic introduced in
version 2.6.3 preventing Maui/Moab from starting jobs.
-- Updated the QOS limits documentation and man page.
* Changes in Slurm 2.6.3
========================
-- Add support for some new #PBS options in sbatch scripts and qsub wrapper:
-l accelerator=true|false (GPU use)
-l mpiprocs=# (processors per node)
-l naccelerators=# (GPU count)
-l select=# (node count)
-l ncpus=# (task count)
-v key=value (environment variable)
-W depend=opts (job dependencies, including "on" and "before" options)
-W umask=# (set job's umask)
-- Added qalter and qrerun commands to torque package.
-- Corrections to qstat logic: job CPU count and partition time format.
-- Add job_submit/pbs plugin to translate PBS job dependency options to the
extend possible (no support for PBS "before" options) and set some PBS
environment variables.
-- Add spank/pbs plugin to set a bunch of PBS environment variables.
-- Backported sh5util from master to 2.6 as there are some important
bugfixes and the new item extraction feature.
-- select/cons_res - Correct MacCPUsPerNode partition constraint for CR_Socket.
-- scontrol - for setdebugflags command, avoid parsing "-flagname" as an
scontrol command line option.
-- Fix issue with step accounting if a job is requeued.
-- Close file descriptors on exec of prolog, epilog, etc.
-- Fix issue when a user has held a job and then sets the begin time
into the future.
-- Scontrol - Enable changing a job's stdout file.
-- Fix issues where memory or node count of a srun job is altered while the
srun is pending. The step creation would use the old values and possibly
hang srun since the step wouldn't be able to be created in the modified
allocation.
-- Add support for new SchedulerParameters value of "bf_max_job_part", the
maximum depth the backfill scheduler should go in any single partition.
-- acct_gather/infiniband plugin - Correct packets_in/out values.
-- BLUEGENE - Don't ignore a conn-type request from the user.
-- BGQ - Force a request on a Q for a MESH to be a TORUS in a dimension that
can only be a TORUS (1).
-- Change max message length from 100MB to 1GB before generating "Insane
message length" error.
-- sched/backfill - Prevent possible memory corruption due to use of
bf_continue option and long running scheduling cycle (pending jobs could
have been cancelled and purged).
-- CRAY - fix AcceleratorAllocation depth correctly for basil 1.3
-- Created the environment variable SLURM_JOB_NUM_NODES for srun jobs and
updated the srun man page.
-- BLUEGENE/CRAY - Don't set env variables that pertain to a node when Slurm
isn't doing the launching.
-- gres/gpu and gres/mic - Do not treat the existence of an empty gres.conf
file as a fatal error.
-- Fixed for if hours are specified as 0 the time days-0:min specification
is not parsed correctly.
-- switch/nrt - Fix for memory leak.
-- Subtract the PMII_COMMANDLEN_SIZE in contribs/pmi2/pmi2_api.c to prevent
certain implementation of snprintf() to segfault.
* Changes in Slurm 2.6.2
========================
-- Fix issue with reconfig and GrpCPURunMins
-- Fix of wrong node/job state problem after reconfig
-- Allow users who are coordinators update their own limits in the accounts
they are coordinators over.
-- BackupController - Make sure we have a connection to the DBD first thing
to avoid it thinking we don't have a cluster name.
-- Correct value of min_nodes returned by loading job information to consider
the job's task count and maximum CPUs per node.
-- If running jobacct_gather/none fix issue on unpacking step completion.
-- Reservation with CoreCnt: Avoid possible invalid memory reference.
-- sjstat - Add man page when generating rpms.
-- Make sure GrpCPURunMins is added when creating a user, account or QOS with
sacctmgr.
-- Fix for invalid memory reference due to multiple free calls caused by
job arrays submitted to multiple partitions.
-- Enforce --ntasks-per-socket=1 job option when allocating by socket.
-- Validate permissions of key directories at slurmctld startup. Report
anything that is world writable.
-- Improve GRES support for CPU topology. Previous logic would pick CPUs then
reject jobs that can not match GRES to the allocated CPUs. New logic first
filters out CPUs that can not use the GRES, next picks CPUs for the job,
and finally picks the GRES that best match those CPUs.
-- Switch/nrt - Prevent invalid memory reference when allocating single adapter
per node of specific adapter type
-- CRAY - Make Slurm work with CLE 5.1.1
-- Fix segfault if submitting to multiple partitions and holding the job.
-- Use MAXPATHLEN instead of the hardcoded value 1024 for maximum file path
lengths.
-- If OverTimeLimit is defined do not declare failed those jobs that ended
in the OverTimeLimit interval.
* Changes in Slurm 2.6.1
========================
-- slurmdbd - Allow job derived ec and comments to be modified by non-root
users.
-- Fix issue with job name being truncated to 24 chars when sending a mail
message.
-- Fix minor issues with spec file, missing files and including files
erroneously on a bluegene system.
-- sacct - fix --name and --partition options when using
accounting_storage/filetxt.
-- squeue - Remove extra whitespace of default printout.
-- BGQ - added head ppcfloor as an include dir when building.
-- BGQ - Better debug messages in runjob_mux plugin.
-- PMI2 Updated the Makefile.am to build a versioned library.
-- CRAY - Fix srun --mem_bind=local option with launch/aprun.
-- PMI2 Corrected buffer size computation in the pmi2_api.c module.
-- GRES accounting data wrong in database: gres_alloc, gres_req, and gres_used
fields were empty if the job was not started immediately.
-- Fix sbatch and srun task count logic when --ntasks-per-node specified,
but no explicit task count.
-- Corrected the hdf5 profile user guide and the acct_gather.conf
documentation.
-- IPMI - Fix Math bug getting new wattage.
-- Corrected the AcctGatherProfileType documentation in slurm.conf
-- Corrected the sh5util program to print the header in the csv file
only once, set the debug messages at debug() level, make the argument
check case insensitive and avoid printing duplicate \n.
-- If cannot collect energy values send message to the controller
to drain the node and log error slurmd log file.
-- Handle complete removal of CPURunMins time at the end of the job instead
of at multifactor poll.
-- sview - Add missing debug_flag options.
-- PGSQL - Notes about Postgres functionality being removed in the next
version of Slurm.
-- MYSQL - fix issue when rolling up usage and events happened when a cluster
was down (slurmctld not running) during that time period.
-- sched/wiki2 - Insure that Moab gets current CPU load information.
-- Prevent infinite loop in parsing configuration if including file containing
one blank line.
-- Fix pack and unpack between 2.6 and 2.5.
-- Fix job state recovery logic in which a job's accounting frequency was
not set. This would result in a value of 65534 seconds being used (the
equivalent of NO_VAL in uint16_t), which could result in the job being
requeued or aborted.
-- Validate a job's accounting frequency at submission time rather than
waiting for it's initiation to possibly fail.
-- Fix CPURunMins if a job is requeued from a failed launch.
-- Fix in accounting_storage/filetxt to correct start times which sometimes
could end up before the job started.
-- Fix issue with potentially referencing past an array in parse_time()
-- CRAY - fix issue with accelerators on a cray when parsing BASIL 1.3 XML.
-- Fix issue with a 2.5 slurmstepd locking up when talking to a 2.6 slurmd.
-- Add argument to priority plugin's priority_p_reconfig function to note
when the association and QOS used_cpu_run_secs field has been reset.
* Changes in Slurm 2.6.0
========================
-- Fix it so bluegene and serial systems don't get warnings over new NODEDATA
enum.
-- When a job is aborted send a message for any tasks that have completed.
-- Correction to memory per CPU calculation on system with threads and
allocating cores or sockets.
-- Requeue batch job if it's node reboots (used to abort the job).
-- Enlarge maximum size of srun's hostlist file.
-- IPMI - Fix first poll to get correct consumed_energy for a step.
-- Correction to job state recovery logic that could result in assert failure.
-- Record partial step accounting record if allocated nodes fail abnormally.
-- Accounting - fix issue where PrivateData=jobs or users could potentially
show information to users that had no associations on the system.
-- Make PrivateData in slurmdbd.conf case insensitive.
-- sacct/sstat - Add format option ConsumedEnergyRaw to print full energy
values.
* Changes in Slurm 2.6.0rc2
===========================
-- HDF5 - Fix issue with Ubuntu where HDF5 development headers are
overwritten by the parallel versions thus making it so we need handle
both cases.
-- ACCT_GATHER - handle suspending correctly for polling threads.
-- Make SLURM_DISTRIBUTION env var hold both types of distribution if
specified.
-- Remove hardcoded /usr/local from slurm.spec.
-- Modify slurmctld locking to improve performance under heavy load with
very large numbers of batch job submissions or job cancellations.
-- sstat - Fix issue where if -j wasn't given allow last argument to be checked
for as the job/step id.
-- IPMI - fix adjustment on poll when using EnergyIPMICalcAdjustment.
* Changes in Slurm 2.6.0rc1
===========================
-- Added helper script for launching symmetric and MIC-only MPI tasks within
SLURM (in contribs/mic/mpirun-mic).
-- Change maximum delay for state save from 2 secs to 5 secs. Make timeout
configurable at build time by defining SAVE_MAX_WAIT.
-- Modify slurmctld data structure locking to interleave read and write
locks rather than always favor write locks over read locks.
-- Added sacct format option of "ALL" to print all fields.
-- Deprecate the SchedulerParameters value of "interval" use "bf_interval"
instead as documented.
-- Add acct_gather_profile/hdf5 to profile jobs with hdf5
-- Added MaxCPUsPerNode partition configuration parameter. This can be
especially useful to schedule systems with GPUs.
-- Permit "scontrol reboot_node" for nodes in MAINT reservation.
-- Added "PriorityFlags" value of "SMALL_RELATIVE_TO_TIME". If set, the job's
size component will be based upon not the job size alone, but the job's
size divided by it's time limit.
-- Added sbatch option "--ignore-pbs" to ignore "#PBS" options in the batch
script.
-- Rename slurm_step_ctx_params_t field from "mem_per_cpu" to "pn_min_memory".
Job step now accepts memory specification in either per-cpu or per-node
basis.
-- Add ability to specify host repitition count in the srun hostfile (e.g.
"host1*2" is equivalent to "host1,host1").
* Changes in Slurm 2.6.0pre3
============================
-- Add milliseconds to default log message header (both RFC 5424 and ISO 8601
time formats). Disable milliseconds logging using the configure
parameter "--disable-log-time-msec". Default time format changes to
ISO 8601 (without time zone information). Specify "--enable-rfc5424time"
to restore the time zone information.
-- Add username (%u) to the filename pattern in the batch script.
-- Added options for front end nodes of AllowGroups, AllowUsers, DenyGroups,
and DenyUsers.
-- Fix sched/backfill logic to initiate jobs with maximum time limit over the
partition limit, but the minimum time limit permits it to start.
-- gres/gpu - Fix for gres.conf file with multiple files on a single line
using a slurm expression (e.g. "File=/dev/nvidia[0-1]").
-- Replaced ipmi.conf with generic acct_gather.conf file for all acct_gather
plugins. For those doing development to use this follow the model set
forth in the acct_gather_energy_ipmi plugin.
-- Added more options to update a step's information
-- Add DebugFlags=ThreadID which will print the thread id of the calling
thread.
-- CRAY - Allocate whole node (CPUs) in reservation despite what the
user requests. We have found any srun/aprun afterwards will work on a
subset of resources.
* Changes in Slurm 2.6.0pre2
============================
-- Do not purge inactive interactive jobs that lack a port to ping (added
for MR+ operation).
-- Advanced reservations with hostname and core counts now supports asymetric
reservations (e.g. specific different core count for each node).
-- Added slurmctld/dynalloc plugin for MapReduce+ support.
-- Added "DynAllocPort" configuration parameter.
-- Added partition paramter of SelectTypeParameters to override system-wide
value.
-- Added cr_type to partition_info data structure.
-- Added allocated memory to node information available (within the existing
select_nodeinfo field of the node_info_t data structure). Added Allocated
Memory to node information displayed by sview and scontrol commands.
-- Make sched/backfill the default scheduling plugin rather than sched/builtin
(FIFO).
-- Added support for a job having different priorities in different partitions.
-- Added new SchedulerParameters configuration parameter of "bf_continue"
which permits the backfill scheduler to continue considering jobs for
backfill scheduling after yielding locks even if new jobs have been
submitted. This can result in lower priority jobs from being backfill
scheduled instead of newly arrived higher priority jobs, but will permit
more queued jobs to be considered for backfill scheduling.
-- Added support to purge reservation records from accounting.
-- Cray - Add support for Basil 1.3
* Changes in SLURM 2.6.0pre1
============================
-- Add "state" field to job step information reported by scontrol.
-- Notify srun to retry step creation upon completion of other job steps
rather than polling. This results in much faster throughput for job step
execution with --exclusive option.
-- Added "ResvEpilog" and "ResvProlog" configuration parameters to execute a
program at the beginning and end of each reservation.
-- Added "slurm_load_job_user" function. This is a variation of
"slurm_load_jobs", but accepts a user ID argument, potentially resulting
in substantial performance improvement for "squeue --user=ID"
-- Added "slurm_load_node_single" function. This is a variation of
"slurm_load_nodes", but accepts a node name argument, potentially resulting
in substantial performance improvement for "sinfo --nodes=NAME".
-- Added "HealthCheckNodeState" configuration parameter identify node states
on which HealthCheckProgram should be executed.
-- Remove sacct --dump --formatted-dump options which were deprecated in
2.5.
-- Added support for job arrays (phase 1 of effort). See "man sbatch" option
-a/--array for details.
-- Add new AccountStorageEnforce options of 'nojobs' and 'nosteps' which will
allow the use of accounting features like associations, qos and limits but
not keep track of jobs or steps in accounting.
-- Cray - Add new cray.conf parameter of "AlpsEngine" to specify the
communication protocol to be used for ALPS/BASIL.
-- select/cons_res plugin: Correction to CPU allocation count logic in for
cores without hyperthreading.
-- Added new SelectTypeParameter value of "CR_ALLOCATE_FULL_SOCKET".
-- Added PriorityFlags value of "TICKET_BASED" and merged priority/multifactor2
plugin into priority/multifactor plugin.
-- Add "KeepAliveTime" configuration parameter controlling how long sockets
used for srun/slurmstepd communications are kept alive after disconnect.
-- Added SLURM_SUBMIT_HOST to salloc, sbatch and srun job environment.
-- Added SLURM_ARRAY_TASK_ID to environment of job array.
-- Added squeue --array/-r option to optimize output for job arrays.
-- Added "SlurmctldPlugstack" configuration parameter for generic stack of
slurmctld daemon plugins.
-- Removed contribs/arrayrun tool. Use native support for job arrays.
-- Modify default installation locations for RPMs to match "make install":
_prefix /usr/local
_slurm_sysconfdir %{_prefix}/etc/slurm
_mandir %{_prefix}/share/man
_infodir %{_prefix}/share/info
-- Add acct_gather_energy/ipmi which works off freeipmi for energy gathering
* Changes in Slurm 2.5.8
========================
-- Fix for slurmctld segfault on NULL front-end reason field.
-- Avoid gres step allocation errors when a job shrinks in size due to either
down nodes or explicit resizing. Generated slurmctld errors of this type:
"step_test ... gres_bit_alloc is NULL"
-- Fix bug that would leak memory and over-write the AllowGroups field if on
"scontrol reconfig" when AllowNodes is manually changed using scontrol.
-- Get html/man files to install in correct places with rpms.
-- Remove --program-prefix from spec file since it appears to be added by
default and appeared to break other things.
-- Updated the automake min version in autogen.sh to be correct.
-- Select/cons_res - Correct total CPU count allocated to a job with
--exclusive and --cpus-per-task options
-- switch/nrt - Don't allocate network resources unless job step has 2+ nodes.
-- select/cons_res - Avoid extraneous "oversubscribe" error messages.
-- Reorder get config logic to avoid deadlock.
-- Enforce QOS MaxCPUsMin limit when job submission contains no user-specified
time limit.
-- EpilogSlurmctld pthread is passed required arguments rather than a pointer
to the job record, which under some conditions could be purged and result
in an invalid memory reference.
* Changes in Slurm 2.5.7
========================
-- Fix for linking to the select/cray plugin to not give warning about
undefined variable.
-- Add missing symbols to the xlator.h
-- Avoid placing pending jobs in AdminHold state due to backfill scheduler
interactions with advanced reservation.
-- Accounting - make average by task not cpu.
-- CRAY - Change logging of transient ALPS errors from error() to debug().
-- POE - Correct logic to support poe option "-euidevice sn_all" and
"-euidevice sn_single".
-- Accounting - Fix minor initialization error.
-- POE - Correct logic to support srun network instances count with POE.
-- POE - With the srun --launch-cmd option, report proper task count when
the --cpus-per-task option is used without the --ntasks option.
-- POE - Fix logic binding tasks to CPUs.
-- sview - Fix race condition where new information could of slipped past
the node tab and we didn't notice.
-- Accounting - Fix an invalid memory read when slurmctld sends data about
start job to slurmdbd.
-- If a prolog or epilog failure occurs, drain the node rather than setting it
down and killing all of its jobs.
-- Priority/multifactor - Avoid underflow in half-life calculation.
-- POE - pack missing variable to allow fanout (more than 32 nodes)
-- Prevent clearing reason field for pending jobs. This bug was introduced in
v2.5.5 (see "Reject job at submit time ...").
-- BGQ - Fix issue with preemption on sub-block jobs where a job would kill
all preemptable jobs on the midplane instead of just the ones it needed to.
-- switch/nrt - Validate dynamic window allocation size.
-- BGQ - When --geo is requested do not impose the default conn_types.
-- CRAY - Support CLE 4.2.0
-- RebootNode logic - Defers (rather than forgets) reboot request with job
running on the node within a reservation.
-- switch/nrt - Correct network_id use logic. Correct support for user sn_all
and sn_single options.
-- sched/backfill - Modify logic to reduce overhead under heavy load.
-- Fix job step allocation with --exclusive and --hostlist option.
-- Select/cons_res - Fix bug resulting in error of "cons_res: sync loop not
progressing, holding job #"
-- checkpoint/blcr - Reset max_nodes from zero to NO_VAL on job restart.
-- launch/poe - Fix for hostlist file support with repeated host names.
-- priority/multifactor2 - Prevent possible divide by zero.
-- srun - Don't check for executable if --test-only flag is used.
-- energy - On a single node only use the last task for gathering energy.
Since we don't currently track energy usage per task (only per step).
Otherwise we get double the energy.
* Changes in Slurm 2.5.6
========================
-- Gres fix for requeued jobs.
-- Gres accounting - Fix regression in 2.5.5 for keeping track of gres
requested and allocated.
* Changes in Slurm 2.5.5
========================
-- Fix for sacctmgr add qos to handle the 'flags' option.
-- Export SLURM_ environment variables from sbatch, even if "--export"
option does not explicitly list them.
-- If node is in more than one partition, correct counting of allocated CPUs.
-- If step requests more CPUs than possible in specified node count of job
allocation then return ESLURM_TOO_MANY_REQUESTED_CPUS rather than
ESLURM_NODES_BUSY and retrying.
-- CRAY - Fix SLURM_TASKS_PER_NODE to be set correctly.
-- Accounting - more checks for strings with a possible `'` in it.
-- sreport - Fix by adding planned down time to utilization reports.
-- Do not report an error when sstat identifies job steps terminated during
its execution, but log using debug type message.
-- Select/cons_res - Permit node removed from job by going down to be returned
to service and re-used by another job.
-- Select/cons_res - Tighter packing of job allocations on sockets.
-- SlurmDBD - fix to allow user root along with the slurm user to register a
cluster.
-- Select/cons_res - Fix for support of consecutive node option.
-- Select/cray - Modify build to enable direct use of libslurm library.
-- Bug fixes related to job step allocation logic.
-- Cray - Disable enforcement of MaxTasksPerNode, which is not applicable
with launch/aprun.
-- Accounting - When rolling up data from past usage ignore "idle" time from
a reservation when it has the "Ignore_Jobs" flag set. Since jobs could run
outside of the reservation in it's nodes without this you could have
double time.
-- Accounting - Minor fix to avoid reuse of variable erroneously.
-- Reject job at submit time if the node count is invalid. Previously such a
job submitted to a DOWN partition would be queued.
-- Purge vestigial job scripts when the slurmd cold starts or slurmstepd
terminates abnormally.
-- Add support for FreeBSD.
-- Add sanity check for NULL cluster names trying to register.
-- BGQ - Push action 'D' info to scontrol for admins.
-- Reset a job's reason from PartitionDown when the partition is set up.
-- BGQ - Handle issue where blocks would have a pending job on them and
while it was free cnodes would go into software error and kill the job.
-- BGQ - Fix issue where if for some reason we are freeing a block with
a pending job on it we don't kill the job.
-- BGQ - Fix race condition were a job could of been removed from a block
without it still existing there. This is extremely rare.
-- BGQ - Fix for when a step completes in Slurm before the runjob_mux notifies
the slurmctld there were software errors on some nodes.
-- BGQ - Fix issue on state recover if block states are not around
and when reading in state from DB2 we find a block that can't be created.
You can now do a clean start to rid the bad block.
-- Modify slurmdbd to retransmit to slurmctld daemon if it is not responding.
-- BLUEGENE - Fix issue where when doing backfill preemptable jobs were
never looked at to determine eligibility of backfillable job.
-- Cray/BlueGene - Disable srun --pty option unless LaunchType=launch/slurm.
-- CRAY - Fix sanity check for systems with more than 32 cores per node.
-- CRAY - Remove other objects from MySQL query that are available from
the XML.
-- BLUEGENE - Set the geometry of a job when a block is picked and the job
isn't a sub-block job.
-- Cray - avoid check of macro versions of CLE for version 5.0.
-- CRAY - Fix memory issue with reading in the cray.conf file.
-- CRAY - If hostlist is given with srun make sure the node count is the same
as the hosts given.
-- CRAY - If task count specified, but no tasks-per-node, then set the tasks
per node in the BASIL reservation request.
-- CRAY - fix issue with --mem option not giving correct amount of memory
per cpu.
-- CRAY - Fix if srun --mem is given outside an allocation to set the
APRUN_DEFAULT_MEMORY env var for aprun. This scenario will not display
the option when used with --launch-cmd.
-- Change sview to use GMutex instead of GStaticMutex
-- CRAY - set APRUN_DEFAULT_MEMROY instead of CRAY_AUTO_APRUN_OPTIONS
-- sview - fix issue where if a partition was completely in one state the
cpu count would be reflected correctly.
-- BGQ - fix for handling half rack system in STATIC of OVERLAP mode to
implicitly create full system block.
-- CRAY - Dynamically create BASIL XML buffer to resize as needed.
-- Fix checking if QOS limit MaxCPUMinsPJ is set along with DenyOnLimit to
deny the job instead of holding it.
-- Make sure on systems that use a different launcher than launch/slurm not
to attempt to signal tasks on the frontend node.
-- Cray - when a step is requested count other steps running on nodes in the
allocation as taking up the entire node instead of just part of the node
allocated. And always enforce exclusive on a step request.
-- Cray - display correct nodelist, node/cpu count on steps.
* Changes in Slurm 2.5.4
========================
-- Fix bug in PrologSlurmctld use that would block job steps until node
responds.
-- CRAY - If a partition has MinNodes=0 and a batch job doesn't request nodes
put the allocation to 1 instead of 0 which prevents the allocation to
happen.
-- Better debug when the database is down and using the --cluster option in
the user commands.
-- When asking for job states with sacct, default to 'now' instead of midnight
of the current day.
-- Fix for handling a test-only job or immediate job that fails while being
built.
-- Comment out all of the logic in the job_submit/defaults plugin. The logic
is only an example and not meant for actual use.
-- Eliminate configuration file 4096 character line limitation.
-- More robust logic for tree message forward
-- BGQ - When cnodes fail in a timeout fashion correctly look up parent
midplane.
-- Correct sinfo "%c" (node's CPU count) output value for Bluegene systems.
-- Backfill - Responsive improvements for systems with large numbers of jobs
(>5000) and using the SchedulerParameters option bf_max_job_user.
-- slurmstepd: ensure that IO redirection openings from/to files correctly
handle interruption
-- BGQ - Able to handle when midplanes go into Hardware::SoftwareFailure
-- GRES - Correct tracking of specific resources used after slurmctld restart.
Counts would previously go negative as jobs terminate and decrement from
a base value of zero.
-- Fix for priority/multifactor2 plugin to not assert when configured with
--enable-debug.
-- Select/cons_res - If the job request specified --ntasks-per-socket and the
allocation using is cores, then pack the tasks onto the sockets up to the
specified value.
-- BGQ - If a cnode goes into an 'error' state and the block containing the
cnode does not have a job running on it do not resume the block.
-- BGQ - Handle blocks that don't free themselves in a reasonable time better.
-- BGQ - Fix for signaling steps when allocation ends before step.
-- Fix for backfill scheduling logic with job preemption; starts more jobs.
-- xcgroup - remove bugs with EINTR management in write calls
-- jobacct_gather - fix total values to not always == the max values.
-- Fix for handling node registration messages from older versions without
energy data.
-- BGQ - Allow user to request full dimensional mesh.
-- sdiag command - Correction to jobs started value reported.
-- Prevent slurmctld assert when invalid change to reservation with running
jobs is made.
-- BGQ - If signal is NODE_FAIL allow forward even if job is completing
and timeout in the runjob_mux trying to send in this situation.
-- BGQ - More robust checking for correct node, task, and ntasks-per-node
options in srun, and push that logic to salloc and sbatch.
-- GRES topology bug in core selection logic fixed.
-- Fix to handle init.d script for querying status and not return 1 on
success.
* Changes in SLURM 2.5.3
========================
-- Gres/gpu plugin - If no GPUs requested, set CUDA_VISIBLE_DEVICES=NoDevFiles.
This bug was introduced in 2.5.2 for the case where a GPU count was
configured, but without device files.
-- task/affinity plugin - Fix bug in CPU masks for some processors.
-- Modify sacct command to get format from SACCT_FORMAT environment variable.
-- BGQ - Changed order of library inclusions and fixed incorrect declaration
to compile correctly on newer compilers
-- Fix for not building sview if glib exists on a system but not the gtk libs.
-- BGQ - Fix for handling a job cleanup on a small block if the job has long
since left the system.
-- Fix race condition in job dependency logic which can result in invalid
memory reference.
* Changes in SLURM 2.5.2
========================
-- Fix advanced reservation recovery logic when upgrading from version 2.4.
-- BLUEGENE - fix for QOS/Association node limits.
-- Add missing "safe" flag from print of AccountStorageEnforce option.
-- Fix logic to optimize GRES topology with respect to allocated CPUs.
-- Add job_submit/all_partitions plugin to set a job's default partition
to ALL available partitions in the cluster.
-- Modify switch/nrt logic to permit build without libnrt.so library.
-- Handle srun task launch failure without duplicate error messages or abort.
-- Fix bug in QoS limits enforcement when slurmctld restarts and user not yet
added to the QOS list.
-- Fix issue where sjstat and sjobexitmod was installed in 2 different RPMs.
-- Fix for job request of multiple partitions in which some partitions lack
nodes with required features.
-- Permit a job to use a QOS they do not have access to if an administrator
manually set the job's QOS (previously the job would be rejected).
-- Make more variables available to job_submit/lua plugin: slurm.MEM_PER_CPU,
slurm.NO_VAL, etc.
-- Fix topology/tree logic when nodes defined in slurm.conf get re-ordered.
-- In select/cons_res, correct logic to allocate whole sockets to jobs. Work
by Magnus Jonsson, Umea University.
-- In select/cons_res, correct logic when job removed from only some nodes.
-- Avoid apparent kernel bug in 2.6.32 which apparently is solved in
at least 3.5.0. This avoids a stack overflow when running jobs on
more than 120k nodes.
-- BLUEGENE - If we made a block that isn't runnable because of a overlapping
block, destroy it correctly.
-- Switch/nrt - Dynamically load libnrt.so from within the plugin as needed.
This eliminates the need for libnrt.so on the head node.
-- BLUEGENE - Fix in reservation logic that could cause abort.
* Changes in SLURM 2.5.1
========================
-- Correction to hostlist sorting for hostnames that contain two numeric
components and the first numeric component has various sizes (e.g.
"rack9blade1" should come before "rack10blade1")
-- BGQ - Only poll on initialized blocks instead of calling getBlocks on
each block independently.
-- Fix of task/affinity plugin logic for Power7 processors having hyper-
threading disabled (cpu mask has gaps).
-- Fix of job priority ordering with sched/builtin and priority/multifactor.
Patch from Chris Read.
-- CRAY - Fix for setting up the aprun for a large job (+2000 nodes).
-- Fix for race condition related to compute node boot resulting in node being
set down with reason of "Node <name> unexpectedly rebooted"
-- RAPL - Fix for handling errors when opening msr files.
-- BGQ - Fix for salloc/sbatch to do the correct allocation when asking for
-N1 -n#.
-- BGQ - in emulation make it so we can pretend to run large jobs (>64k nodes)
-- BLUEGENE - Correct method to update conn_type of a job.
-- BLUEGENE - Fix issue with preemption when needing to preempt multiple jobs
to make one job run.
-- Fixed issue where if an srun dies inside of an allocation abnormally it
would of also killed the allocation.
-- FRONTEND - fixed issue where if a systems nodes weren't defined in the
slurm.conf with NodeAddr's signals going to a step could be handled
incorrectly.
-- If sched/backfill starts a job with a QOS having NO_RESERVE and not job
time limit, start it with the partition time limit (or one year if the
partition has no time limit) rather than NO_VAL (140 year time limit);
-- Alter hostlist logic to allocate large grid dynamically instead of on
stack.
-- Change RPC version checks to support version 2.5 slurmctld with version 2.4
slurmd daemons.
-- Correct core reservation logic for use with select/serial plugin.
-- Exit scontrol command on stdin EOF.
-- Disable job --exclusive option with select/serial plugin.
* Changes in SLURM 2.5.0
========================
-- Add DenyOnLimit flag for QOS to deny jobs at submission time if they
request resources that reach a 'Max' limit.
-- Permit SlurmUser or operator to change QOS of non-pending jobs (e.g.
running jobs).
-- BGQ - move initial poll to beginning of realtime interaction, which will
also cause it to run if the realtime server ever goes away.
* Changes in SLURM 2.5.0-rc2
============================
-- Modify sbcast logic to survive slurmd daemon restart while file a
transmission is in progress.
-- Add retry logic to munge encode/decode calls. This is needed if the munge
deamon is under very heavy load (e.g. with 1000 slurmd daemons per compute
node).
-- Add launch and acct_gather_energy plugins to RPMs.
-- Restore support for srun "--mpi=list" option.
-- CRAY - Introduce step accounting for a Cray.
-- Modify srun to abandon I/O 60 seconds after the last task ends. Otherwise
an aborted slurmstepd can cause the srun process to hang indefinitely.
-- ENERGY - RAPL - alter code to close open files (and only open them once
where needed)
-- If the PrologSlurmctld fails, then requeue the job an indefinite number
of times instead of only one time.
* Changes in SLURM 2.5.0-rc1
============================
-- Added Prolog and Epilog Guide (web page). Based upon work by Jason Sollom,
Cray Inc. and used by permission.
-- Restore gang scheduling functionality. Preemptor was not being scheduled.
Fix for bugzilla #3.
-- Add "cpu_load" to node information. Populate CPULOAD in node information
reported to Moab cluster manager.
-- Preempt jobs only when insufficient idle resources exist to start job,
regardless of the node weight.
-- Added priority/multifactor2 plugin based upon ticket distribution system.
Work by Janne Blomqvist, Aalto University.
-- Add SLURM_NODELIST to environment variables available to Prolog and Epilog.
-- Permit reservations to allow or deny access by account and/or user.
-- Add ReconfigFlags value of KeepPartState. See "man slurm.conf" for details.
-- Modify the task/cgroup plugin adding a task_pre_launch_priv function and
move slurmstepd outside of the step's cgroup. Work by Matthieu Hautreux.
-- Intel MIC processor support added using gres/mic plugin. BIG thanks to
Olli-Pekka Lehto, CSC-IT Center for Science Ltd.
-- Accounting - Change empty jobacctinfo structs to not actually be used
instead of putting 0's into the database we put NO_VALS and have sacct
figure out jobacct_gather wasn't used.
-- Cray - Prevent calling basil_confirm more than once per job using a flag.
-- Fix bug with topology/tree and job with min-max node count. Now try to
get max node count rather than minimizing leaf switches used.
-- Add AccountingStorageEnforce=safe option to provide method to avoid jobs
launching that wouldn't be able to run to completion because of a
GrpCPUMins limit.
-- Add support for RFC 5424 timestamps in logfiles. Disable with configuration
option of "--disable-rfc5424time". By Janne Blomqvist, Aalto University.
-- CRAY - Replace srun.pl with launch/aprun plugin to use srun to wrap the
aprun process instead of a perl script.
-- srun - Rename --runjob-opts to --launcher-opts to be used on systems other
than BGQ.
-- Added new DebugFlags - Energy for AcctGatherEnergy plugins.
-- start deprecation of sacct --dump --fdump
-- BGQ - added --verbose=OFF when srun --quiet is used
-- Added acct_gather_energy/rapl plugin to record power consumption by job.
Work by Yiannis Georgiou, Martin Perry, et. al., Bull
* Changes in SLURM 2.5.0.pre3
=============================
-- Add Google search to all web pages.
-- Add sinfo -T option to print reservation information. Work by Bill Brophy,
Bull.
-- Force slurmd exit after 2 minute wait, even if threads are hung.
-- Change node_req field in struct job_resources from 8 to 32 bits so we can
run more than 256 jobs per node.
-- sched/backfill: Improve accuracy of expected job start with respect to
reservations.
-- sinfo partition field size will be set the the length of the longest
partition name by default.
-- Make it so the parse_time will return a valid 0 if given epoch time and
set errno == ESLURM_INVALID_TIME_VALUE on error instead.
-- Correct srun --no-alloc logic when node count exceeds node list or task
task count is not a multiple of the node count. Work by Hongjia Cao, NUDT.
-- Completed integration with IBM Parallel Environment including POE and IBM's
NRT switch library.
* Changes in SLURM 2.5.0.pre2
=============================
-- When running with multiple slurmd daemons per node, enable specifying a
range of ports on a single line of the node configuration in slurm.conf.
-- Add reservation flag of Part_Nodes to allocate all nodes in a partition to
a reservation and automatically change the reservation when nodes are
added to or removed from the reservation. Based upon work by
Bill Brophy, Bull.
-- Add support for advanced reservation for specific cores rather than whole
nodes. Current limiations: homogeneous cluster, nodes idle when reservation
created, and no more than one reservation per node. Code is still under
development. Work by Alejandro Lucero Palau, et. al, BSC.
-- Add DebugFlag of Switch to log switch plugin details.
-- Correct job node_cnt value in job completion plugin when job fails due to
down node. Previously was too low by one.
-- Add new srun option --cpu-freq to enable user control over the job's CPU
frequency and thus it's power consumption. NOTE: cpu frequency is not
currently preserved for jobs being suspended and later resumed. Work by
Don Albert, Bull.
-- Add node configuration information about "boards" and optimize task
placement on minimum number of boards. Work by Rod Schultz, Bull.
* Changes in SLURM 2.5.0.pre1
=============================
-- Add new output to "scontrol show configuration" of LicensesUsed. Output is
"name:used/total"
-- Changed jobacct_gather plugin infrastructure to be cleaner and easier to
maintain.
-- Change license option count separator from "*" to ":" for consistency with
the gres option (e.g. "--licenses=foo:2 --gres=gpu:2"). The "*" will still
be accepted, but is no longer documented.
-- Permit more than 100 jobs to be scheduled per node (new limit is 250
jobs).
-- Restructure of srun code to allow outside programs to utilize existing
logic.
* Changes in SLURM 2.4.6
========================
-- Correct WillRun authentication logic when issued for non-job owner.
-- BGQ - fix memory leak
-- BGQ - Fix to check block for action 'D' if it also has nodes in error.
* Changes in SLURM 2.4.5
========================
-- Cray - On job kill requeust, send SIGCONT, SIGTERM, wait KillWait and send
SIGKILL. Previously just sent SIGKILL to tasks.
-- BGQ - Fix issue when running srun outside of an allocation and only
specifying the number of tasks and not the number of nodes.
-- BGQ - validate correct ntasks_per_node
-- BGQ - when srun -Q is given make runjob be quiet
-- Modify use of OOM (out of memory protection) for Linux 2.6.36 kernel
or later. NOTE: If you were setting the environment variable
SLURMSTEPD_OOM_ADJ=-17, it should be set to -1000 for Linux 2.6.36 kernel
or later.
-- BGQ - Fix job step timeout actually happen when done from within an
allocation.
-- Reset node MAINT state flag when a reservation's nodes or flags change.
-- Accounting - Fix issue where QOS usage was being zeroed out on a
slurmctld restart.
-- BGQ - Add 64 tasks per node as a valid option for srun when used with
overcommit.
-- BLUEGENE - With Dynamic layout mode - Fix issue where if a larger block
was already in error and isn't deallocating and underlying hardware goes
bad one could get overlapping blocks in error making the code assert when
a new job request comes in.
-- BGQ - handle pending actions on a block better when trying to deallocate it.
-- Accounting - Fixed issue where if nodenames have changed on a system and
you query against that with -N and -E you will get all jobs during that
time instead of only the ones running on -N.
-- BGP - Fix for HTC mode
-- Accounting - If a job start message fails to the SlurmDBD reset the db_inx
so it gets sent again. This isn't a major problem since the start will
happen when the job ends, but this does make things cleaner.
-- If an salloc is waiting for an allocation to happen and is canceled by the
user mark the state canceled instead of completed.
-- Fix issue in accounting if a user puts a '\' in their job name.
-- Accounting - Fix for if asking for users or accounts that were deleted
with associations get the deleted associations as well.
-- BGQ - Handle shared blocks that need to be removed and have jobs running
on them. This should only happen in extreme conditions.
-- Fix inconsistency for hostlists that have more than 1 range.
-- BGQ - Add mutex around recovery for the Real Time server to avoid hitting
DB2 so hard.
-- BGQ - If an allocation exists on a block that has a 'D' action on it fail
job on future step creation attempts.
* Changes in SLURM 2.4.4
========================
-- BGQ - minor fix to make build work in emulated mode.
-- BGQ - Fix if large block goes into error and the next highest priority jobs
are planning on using the block. Previously it would fail those jobs
erroneously.
-- BGQ - Fix issue when a cnode going to an error (not SoftwareError) state
with a job running or trying to run on it.
-- Execute slurm_spank_job_epilog when there is no system Epilog configured.
-- Fix for srun --test-only to work correctly with timelimits
-- BGQ - If a job goes away while still trying to free it up in the
database, and the job is running on a small block make sure we free up
the correct node count.
-- BGQ - Logic added to make sure a job has finished on a block before it is
purged from the system if its front-end node goes down.
-- Modify strigger so that a filter option of "--user=0" is supported.
-- Correct --mem-per-cpu logic for core or socket allocations with multiple
threads per core.
-- Fix for older < glibc 2.4 systems to use euidaccess() instead of eaccess().
-- BLUEGENE - Do not alter a pending job's node count when changing it's
partition.
-- BGQ - Add functionality to make it so we track the actions on a block.
This is needed for when a free request is added to a block but there are
jobs finishing up so we don't start new jobs on the block since they will
fail on start.
-- BGQ - Fixed InactiveLimit to work correctly to avoid scenarios where a
user's pending allocation was started with srun and then for some reason
the slurmctld was brought down and while it was down the srun was removed.
-- Fixed InactiveLimit math to work correctly
-- BGQ - Add logic to make it so blocks can't use a midplane with a nodeboard
in error for passthrough.
-- BGQ - Make it so if a nodeboard goes in error any block using that midplane
for passthrough gets removed on a dynamic system.
-- BGQ - Fix for printing realtime server debug correctly.
-- BGQ - Cleaner handling of cnode failures when reported through the runjob
interface instead of through the normal method.
-- smap - spread node information across multiple lines for larger systems.
-- Cray - Defer salloc until after PrologSlurmctld completes.
-- Correction to slurmdbd communications failure handling logic, incorrect
error codes returned in some cases.
* Changes in SLURM 2.4.3
========================
-- Accounting - Fix so complete 32 bit numbers can be put in for a priority.
-- cgroups - fix if initial directory is non-existent SLURM creates it
correctly. Before the errno wasn't being checked correctly
-- BGQ - fixed srun when only requesting a task count and not a node count
to operate the same way salloc or sbatch did and assign a task per cpu
by default instead of task per node.
-- Fix salloc --gid to work correctly. Reported by Brian Gilmer
-- BGQ - fix smap to set the correct default MloaderImage
-- BLUEGENE - updated documentation.
-- Close the batch job's environment file when it contains no data to avoid
leaking file descriptors.
-- Fix sbcast's credential to last till the end of a job instead of the
previous 20 minute time limit. The previous behavior would fail for
large files 20 minutes into the transfer.
-- Return ESLURM_NODES_BUSY rather than ESLURM_NODE_NOT_AVAIL error on job
submit when required nodes are up, but completing a job or in exclusive
job allocation.
-- Add HWLOC_FLAGS so linking to libslurm works correctly
-- BGQ - If using backfill and a shared block is running at least one job
and a job comes through backfill and can fit on the block without ending
jobs don't set an end_time for the running jobs since they don't need to
end to start the job.
-- Initialize bind_verbose when using task/cgroup.
-- BGQ - Fix for handling backfill much better when sharing blocks.
-- BGQ - Fix for making small blocks on first pass if not sharing blocks.
-- BLUEGENE - Remove force of default conn_type instead of leaving NAV
when none are requested. The Block allocator sets it up temporarily so
this isn't needed.
-- BLUEGENE - Fix deadlock issue when dealing with bad hardware if using
static blocks.
-- Fix to mysql plugin during rollup to only query suspended table when jobs
reported some suspended time.
-- Fix compile with glibc 2.16 (Kacper Kowalik)
-- BGQ - fix for deadlock where a block has error on it and all jobs
running on it are preemptable by scheduling job.
-- proctrack/cgroup: Exclude internal threads from "scontrol list pids".
Patch from Matthieu Hautreux, CEA.
-- Memory leak fixed for select/linear when preempting jobs.
-- Fix if updating begin time of a job to update the eligible time in
accounting as well.
-- BGQ - make it so you can signal steps when signaling the job allocation.
-- BGQ - Remove extra overhead if a large block has many cnode failures.
-- Priority/Multifactor - Fix issue with age factor when a job is estimated to
start in the future but is able to run now.
-- CRAY - update to work with ALPS 5.1
-- BGQ - Handle issue of speed and mutexes when polling instead of using the
realtime server.
-- BGQ - Fix minor sorting issue with sview when sorting by midplanes.
-- Accounting - Fix for handling per user max node/cpus limits on a QOS
correctly for current job.
-- Update documentation for -/+= when updating a reservation's
users/accounts/flags
-- Update pam module to work if using aliases on nodes instead of actual
host names.
-- Correction to task layout logic in select/cons_res for job with minimum
and maximum node count.
-- BGQ - Put final poll after realtime comes back into service to avoid
having the realtime server go down over and over again while waiting
for the poll to finish.
-- task/cgroup/memory - ensure that ConstrainSwapSpace=no is correctly
handled. Work by Matthieu Hautreux, CEA.
-- CRAY - Fix for sacct -N option to work correctly
-- CRAY - Update documentation to describe installation from rpm instead
or previous piecemeal method.
-- Fix sacct to work with QOS' that have previously been deleted.
-- Added all available limits to the output of sacctmgr list qos
* Changes in SLURM 2.4.2
========================
-- BLUEGENE - Correct potential deadlock issue when hardware goes bad and
there are jobs running on that hardware.
-- If job is submitted to more than one partition, it's partition pointer can
be set to an invalid value. This can result in the count of CPUs allocated
on a node being bad, resulting in over- or under-allocation of its CPUs.
Patch by Carles Fenoy, BSC.
-- Fix bug in task layout with select/cons_res plugin and --ntasks-per-node
option. Patch by Martin Perry, Bull.
-- BLUEGENE - remove race condition where if a block is removed while waiting
for a job to finish on it the number of unused cpus wasn't updated
correctly.
-- BGQ - make sure we have a valid block when creating or finishing a step
allocation.
-- BLUEGENE - If a large block (> 1 midplane) is in error and underlying
hardware is marked bad remove the larger block and create a block over
just the bad hardware making the other hardware available to run on.
-- BLUEGENE - Handle job completion correctly if an admin removes a block
where other blocks on an overlapping midplane are running jobs.
-- BLUEGENE - correctly remove running jobs when freeing a block.
-- BGQ - correct logic to place multiple (< 1 midplane) steps inside a
multi midplane block allocation.
-- BGQ - Make it possible for a multi midplane allocation to run on more
than 1 midplane but not the entire allocation.
-- BGL - Fix for syncing users on block from Tim Wickberg
-- Fix initialization of protocol_version for some messages to make sure it
is always set when sending or receiving a message.
-- Reset backfilled job counter only when explicitly cleared using scontrol.
Patch from Alejandro Lucero Palau, BSC.
-- BLUEGENE - Fix for handling blocks when a larger block will not free and
while it is attempting to free underlying hardware is marked in error
making small blocks overlapping with the freeing block. This only
applies to dynamic layout mode.
-- Cray and BlueGene - Do not treat lack of usable front-end nodes when
slurmctld deamon starts as a fatal error. Also preserve correct front-end
node for jobs when there is more than one front-end node and the slurmctld
daemon restarts.
-- Correct parsing of srun/sbatch input/output/error file names so that only
the name "none" is mapped to /dev/null and not any file name starting
with "none" (e.g. "none.o").
-- BGQ - added version string to the load of the runjob_mux plugin to verify
the current plugin has been loaded when using runjob_mux_refresh_config
-- CGROUPS - Use system mount/umount function calls instead of doing fork
exec of mount/umount from Janne Blomqvist.
-- BLUEGENE - correct start time setup when no jobs are blocking the way
from Mark Nelson
-- Fixed sacct --state=S query to return information about suspended jobs
current or in the past.
-- FRONTEND - Made error warning more apparent if a frontend node isn't
configured correctly.
-- BGQ - update documentation about runjob_mux_refresh_config which works
correctly as of IBM driver V1R1M1 efix 008.
This release of paexec was successfully tested on the following
platforms: NetBSD-6.1/amd64, OpenBSD-5.3/i386, FreeBSD-8.3/i386,
Solaris-10/sparc, Solaris-11/amd64 and diverse Linux/{i386,amd64}.
paexec is now selfcontained, libmaa is not needed anymore.
Presentation paexec.pdf was added to presentation/. I hope it will
help easier understand how "paexec" works. It is installed to
${DOCDIR}.
paexec:
- POSIX-2008 getline(3) is used for reading lines
instead of home-made function.
- t '' is equivalent to "no transport", spaces are trimmed.
- "-n +NNN" has higher priority than -t, i.e. if they both are
specified, transport is ignored.
- Fix for -W1.
- Environment variable PAEXEC_EOT was introduced.
- Option -y was added to paexec(1) and paexec_reorder(1).
- Option -C was added to paexec(1).
paexec_reorder:
- Option -x was added to paexec_reorder(1).
A number of fixes and improvements in regression tests.
Changes since 1.7 from NEWS file:
Version 1.7.1
-------------
* Fix a failed assertion in the distance grouping code when loading a XML
file that already contains some groups.
Thanks to Laercio Lima Pilla for reporting the problem.
* Remove unexpected Group objects when loading XML topologies with I/O
objects and NUMA distances.
Thanks to Elena Elkina for reporting the problem and testing patches.
* Fix PCI link speed discovery when using libpciaccess.
* Fix invalid libpciaccess virtual function device/vendor IDs when using
SR-IOV PCI devices on Linux.
* Fix GL component build with old NVCtrl releases.
Thanks to Jirka Hladky for reporting the problem.
* Fix embedding breakage caused by libltdl.
Thanks to Pavan Balaji for reporting the problem.
* Always use the system-wide libltdl instead of shipping one inside hwloc.
* Document issues when enabling plugins while embedding hwloc in another
project, in the documentation section Embedding hwloc in Other Software.
* Add a FAQ entry "How to get useful topology information on NetBSD?"
in the documentation.
* Somes fixes in the renaming code for embedding.
* Miscellaneous minor build fixes.
billiard is a fork of the Python 2.7 multiprocessing package. The
multiprocessing package itself is a renamed and updated version of R Oudkerk's
pyprocessing package. This standalone variant is intended to be compatible with
Python 2.4 and 2.5, and will draw it's fixes/improvements from python-trunk.
* Also it is a fork of the multiprocessin backport package by Christian Heims;
* It includes the no-execv patch contributed by R. Oudkerk;
* And the Pool improvements previously located in Celery;
to address issues with NetBSD-6(and earlier)'s fontconfig not being
new enough for pango.
While doing that, also bump freetype2 dependency to current pkgsrc
version.
Suggested by tron in PR 47882
a) refer 'perl' in their Makefile, or
b) have a directory name of p5-*, or
c) have any dependency on any p5-* package
Like last time, where this caused no complaints.
This release adds several performance features for the Hydra process manager, support for communicator-specific tuning of eager/rendezvous thresholds, and fixes several bugs present in 3.0.3. Please use this release instead of 3.0.3.
A new stable release of MPICH, 3.0.3, is now available for download. This release adds several performance features for MPI-RMA and fixes several bugs present in 3.0.2. Please use this release instead of 3.0.2.
-------------
* New operating system backends
+ Add BlueGene/Q compute node kernel (CNK) support. See the FAQ in the
documentation for details. Thanks to Jeff Hammond, Christopher Samuel
and Erik Schnetter for their help.
+ Add NetBSD support, thanks to Aleksej Saushev.
* New I/O device discovery
+ Add co-processor OS devices such as "mic0" for Intel Xeon Phi (MIC)
on Linux. Thanks to Jerome Vienne for helping.
+ Add co-processor OS devices such as "cuda0" for NVIDIA CUDA-capable GPUs.
+ Add co-processor OS devices such as "opencl0d0" for OpenCL GPU devices
on the AMD OpenCL implementation.
+ Add GPU OS devices such as ":0.0" for NVIDIA X11 displays.
+ Add GPU OS devices such as "nvml0" for NVIDIA GPUs.
Thanks to Marwan Abdellah and Stefan Eilemann for helping.
These new OS devices have some string info attributes such as CoProcType,
GPUModel, etc. to better identify them.
See the I/O Devices and Attributes documentation sections for details.
* New components
+ Add the "opencl", "cuda", "nvml" and "gl" components for I/O device
discovery.
+ "nvml" also improves the discovery of NVIDIA GPU PCIe link speed.
All of these new components may be built as plugins. They may also be
disabled entirely by passing --disable-opencl/cuda/nvml/gl to configure.
See the I/O Devices, Components and Plugins, and FAQ documentation
sections for details.
* API
+ Add hwloc_topology_get_flags().
+ Add hwloc/plugins.h for building external plugins.
See the Adding new discovery components and plugins section.
* Interoperability
+ Add hwloc/opencl.h, hwloc/nvml.h, hwloc/gl.h and hwloc/intel-mic.h
to retrieve the locality of OS devices that correspond to AMD OpenCL
GPU devices or indexes, to NVML devices or indexes, to NVIDIA X11
displays, or to Intel Xeon Phi (MIC) device indexes.
+ Add new helpers in hwloc/cuda.h and hwloc/cudart.h to convert
between CUDA devices or indexes and hwloc OS devices.
+ Add hwloc_ibv_get_device_osdev() and clarify the requirements
of the OpenFabrics Verbs helpers in hwloc/openfabrics-verbs.h.
* Tools
+ hwloc-info is not only a synonym of lstopo -s anymore, it also
dumps information about objects given on the command-line.
* Documentation
+ Add a section "Existing components and plugins".
+ Add a list of common OS devices in section "Software devices".
+ Add a new FAQ entry "Why is lstopo slow?" about lstopo slowness
issues because of GPUs.
+ Clarify the documentation of inline helpers in hwloc/myriexpress.h
and hwloc/openfabrics-verbs.h.
* Misc
+ Improve cache detection on AIX.
+ The HWLOC_COMPONENTS variable now excludes the components whose
names are prefixed with '-'.
+ lstopo --ignore PU now works when displaying the topology in
graphical and textual mode (not when exporting to XML).
+ The `libpci' component is now called `pci' but the old name is still
accepted in the HWLOC_COMPONENTS variable for backward compatibility.
File too long (should be no more than 24 lines).
Line too long (should be no more than 80 characters).
Trailing empty lines.
Trailing white-space.
Trucated the long files as best as possible while preserving the most info
contained in them.
===============================================================================
Changes in 3.0
===============================================================================
# MPI-3: All MPI-3 features are now implemented and the MPI_VERSION
bumped up to 3.0.
# OVERALL: Added support for ARM-v7 native atomics
# MPE: MPE is now separated out of MPICH and can be downloaded/used
as a separate package.
# PM/PMI: Upgraded to hwloc-1.6
# Several other minor bug fixes, memory leak fixes, and code cleanup.
A full list of changes is available using:
svn log -r10344:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich-3.0
... or at the following link:
https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich-3.0?action=follow_copy&rev=HEAD&stop_rev=10344&mode=follow_copy
===============================================================================
Changes in 1.5
===============================================================================
# OVERALL: Nemesis now supports an "--enable-yield=..." configure
option for better performance/behavior when oversubscribing
processes to cores. Some form of this option is enabled by default
on Linux, Darwin, and systems that support sched_yield().
# OVERALL: Added support for Intel Many Integrated Core (MIC)
architecture: shared memory, TCP/IP, and SCIF based communication.
# OVERALL: Added support for IBM BG/Q architecture. Thanks to IBM
for the contribution.
# MPI-3: const support has been added to mpi.h, although it is
disabled by default. It can be enabled on a per-translation unit
basis with "#define MPICH2_CONST const".
# MPI-3: Added support for MPIX_Type_create_hindexed_block.
# MPI-3: The new MPI-3 nonblocking collective functions are now
available as "MPIX_" functions (e.g., "MPIX_Ibcast").
# MPI-3: The new MPI-3 neighborhood collective routines are now available as
"MPIX_" functions (e.g., "MPIX_Neighbor_allgather").
# MPI-3: The new MPI-3 MPI_Comm_split_type function is now available
as an "MPIX_" function.
# MPI-3: The new MPI-3 tools interface is now available as "MPIX_T_"
functions. This is a beta implementation right now with several
limitations, including no support for multithreading. Several
performance variables related to CH3's message matching are exposed
through this interface.
# MPI-3: The new MPI-3 matched probe functionality is supported via
the new routines MPIX_Mprobe, MPIX_Improbe, MPIX_Mrecv, and
MPIX_Imrecv.
# MPI-3: The new MPI-3 nonblocking communicator duplication routine,
MPIX_Comm_idup, is now supported. It will only work for
single-threaded programs at this time.
# MPI-3: MPIX_Comm_reenable_anysource support
# MPI-3: Native MPIX_Comm_create_group support (updated version of
the prior MPIX_Group_comm_create routine).
# MPI-3: MPI_Intercomm_create's internal communication no longer interferes
with point-to-point communication, even if point-to-point operations on the
parent communicator use the same tag or MPI_ANY_TAG.
# MPI-3: Eliminated the possibility of interference between
MPI_Intercomm_create and point-to-point messaging operations.
# Build system: Completely revamped build system to rely fully on
autotools. Parallel builds ("make -j8" and similar) are now supported.
# Build system: rename "./maint/updatefiles" --> "./autogen.sh" and
"configure.in" --> "configure.ac"
# JUMPSHOT: Improvements to Jumpshot to handle thousands of
timelines, including performance improvements to slog2 in such
cases.
# JUMPSHOT: Added navigation support to locate chosen drawable's ends
when viewport has been scrolled far from the drawable.
# PM/PMI: Added support for memory binding policies.
# PM/PMI: Various improvements to the process binding support in
Hydra. Several new pre-defined binding options are provided.
# PM/PMI: Upgraded to hwloc-1.5
# PM/PMI: Several improvements to PBS support to natively use the PBS
launcher.
# Several other minor bug fixes, memory leak fixes, and code cleanup.
A full list of changes is available using:
svn log -r8478:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.5
... or at the following link:
https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.5?action=follow_copy&rev=HEAD&stop_rev=8478&mode=follow_copy
Inter-process locking may be broken on NetBSD under some conditions.
(This didn't get worse since previous package.)
Field tests (benchmarks/skampi) don't reveal that the relevant
code path is invoked.
Major Changes in OpenPA v1.0.4
* native ARM (v7 and higher) support
* numerous memory barrier placement improvements in queue and test code
* x86 memory barrier improvements, including for Intel MIC
* numerous build system improvements
Major Changes in OpenPA v1.0.3
* Libtool shared library support for OPA, avoiding shared/static mixed
linking problems on some platforms.
* The build system should now work more portably with broken/exotic shells.
* pkg-config support
* Emulated atomics can now be detected by the presence of an OPA_EXPLICIT_EMULATION
#define in opa_config.h.
* PPC types are now correctly aligned to 8 bytes instead of 16 bytes.
* many more tests for "make check", fixed missing memory barriers in one test
paexec:
- fixed: NULL dereference when the first line given on input is
empty. Thanks to Sergey Revyako for bug report!
- fixed: entire command passed tp ssh-like transport should be
shquoted. In particular this fixes -x that didn't work with -t.
Thanks to Sergey Revyako for bug report!
- 'paexec -g' accepts empty strings as tasks.
- More regression tests were added
paexec_reorder.1:
- Mistype fix
Here is a list of changes in v1.6.4 as compared to v1.6.3:
- Fix Cygwin shared memory and debugger plugin support. Thanks to
Marco Atzeri for reporting the issue and providing initial patches.
- Fix to obtaining the correct available nodes when a rankfile is
providing the allocation. Thanks to Siegmar Gross for reporting the
problem.
- Fix process binding issue on Solaris. Thanks to Siegmar Gross for
reporting the problem.
- Updates for MXM 2.0.
- Major VT update to 5.14.2.3.
- Fixed F77 constants for Cygwin/Cmake build.
- Fix a linker error when configuring --without-hwloc.
- Automatically provide compiler flags that compile properly on some
types of ARM systems.
- Fix slot_list behavior when multiple sockets are specified. Thanks
to Siegmar Gross for reporting the problem.
- Fixed memory leak in one-sided operations. Thanks to Victor
Vysotskiy for letting us know about this one.
- Added performance improvements to the OpenIB (OpenFabrics) BTL.
- Improved error message when process affinity fails.
- Fixed MPI_MINLOC on man pages for MPI_REDUCE(_LOCAL). Thanks to Jed
Brown for noticing the problem and supplying a fix.
- Made malloc hooks more friendly to IO interprosers. Thanks to the
bug report and suggested fix from Darshan maintainer Phil Carns.
- Restored ability to direct launch under SLURM without PMI support.
- Fixed MPI datatype issues on OpenBSD.
- Major VT update to 5.14.2.3.
- Support FCA v3.0+.
- Fixed header file problems on OpenBSD.
- Fixed issue with MPI_TYPE_CREATE_F90_REAL.
- Fix an issue with using external libltdl installations. Thanks to
opolawski for identifying the problem.
- Fixed MPI_IN_PLACE case for MPI_ALLGATHER for FCA.
- Allow SLURM PMI support to look in lib64 directories. Thanks to
Guillaume Papaure for the patch.
- Restore "use mpi" ABI compatibility with the rest of the 1.5/1.6
series (except for v1.6.3, where it was accidentally broken).
- Fix a very old error in opal_path_access(). Thanks to Marco Atzeri
for chasing it down.
Version 1.6.3 is a minor bugfix release.
All users are encouraged to upgrade to v1.6.3 when possible.
Note that v1.6.3 is ABI compatible with the entire v1.5.x and
v1.6.x series, but is not ABI compatible with the v1.4.x series.
See http://www.open-mpi.org/software/ompi/versions/ for a
description of Open MPI's release methodology.
Here is a list of changes in v1.6.3 as compared to v1.6.2:
- Fix mpirun --launch-agent behavior when a prefix is specified.
Thanks to Reuti for identifying the issue.
- Fixed memchecker configury.
- Brought over some compiler warning squashes from the development trunk.
- Fix spawning from a singleton to multiple hosts when the "add-host"
MPI_Info key is used. Thanks to Brian Budge for pointing out the
problem.
- Add Mellanox ConnextIB IDs and max inline value.
- Fix rankfile when no -np is given.
- FreeBSD detection improvement. Thanks to Brooks Davis for the
patch.
- Removed TCP warnings on Windows.
- Improved collective algorithm selection for very large messages.
- Fix PSM MTL affinity settings.
- Fix issue with MPI_OP_COMMUTATIVE in the mpif.h bindings. Thanks to
Ake Sandgren for providing a patch to fix the issue.
- Fix issue with MPI_SIZEOF when using CHARACTER and LOGICAL types in
the mpi module. Thanks to Ake Sandgren for providing a patch to fix
the issue.
Don't build VampirTrace anymore, it will be introduced as separate package.
Changes in v1.6.2 as compared to v1.6.1:
- Fix issue with MX MTL. Thanks to Doug Eadline for raising the issue.
- Fix singleton MPI_COMM_SPAWN when the result job spans multiple nodes.
- Fix MXM hang, and update for latest version of MXM.
- Update to support Mellanox FCA 2.5.
- Fix startup hang for large jobs.
- Ensure MPI_TESTANY / MPI_WAITANY properly set the empty status when
count==0.
- Fix MPI_CART_SUB behavior of not copying periods to the new
communicator properly. Thanks to John Craske for the bug report.
- Add btl_openib_abort_not_enough_reg_mem MCA parameter to cause Open
MPI to abort MPI jobs if there is not enough registered memory
available on the system (vs. just printing a warning). Thanks to
Brock Palen for raising the issue.
- Minor fix to Fortran MPI_INFO_GET: only copy a value back to the
user's buffer if the flag is .TRUE.
- Fix VampirTrace compilation issue with the PGI compiler suite.
v1.5 is a major new release series. It includes many new features and
changes over the v1.4.x series. The most noticeable changes are the
addition of the lstopo-no-graphics program (which does require any
heavy external library such as Cairo) and the discovery of instruction
caches. There are also many small improvements to all backends, and
some deprecated features have been removed.
Version 1.5.0
-------------
* Backends
+ Do not limit the number of processors to 1024 on Solaris anymore.
+ Gather total machine memory on FreeBSD.
+ XML topology files do not depend on the locale anymore. Float numbers
such as NUMA distances or PCI link speeds now always use a dot as a
decimal separator.
+ Add instruction caches detection on Linux, AIX, Windows and Darwin.
+ Add get_last_cpu_location() support for the current thread on AIX.
+ Support binding on AIX when threads or processes were bound with
bindprocessor(). Thanks to Hendryk Bockelmann for reporting the issue
and testing patches, and to Farid Parpia for explaining the binding
interfaces.
+ Improve AMD topology detection in the x86 backend (for FreeBSD) using
the topoext feature.
* API
+ Increase HWLOC_API_VERSION to 0x00010500 so that API changes may be
detected at build-time.
+ Add a cache type attribute describind Data, Instruction and Unified
caches. Caches with different types but same depth (for instance L1d
and L1i) are placed on different levels.
+ Add hwloc_get_cache_type_depth() to retrieve the hwloc level depth of
of the given cache depth and type, for instance L1i or L2.
It helps disambiguating the case where hwloc_get_type_depth() returns
HWLOC_TYPE_DEPTH_MULTIPLE.
+ Instruction caches are ignored unless HWLOC_TOPOLOGY_FLAG_ICACHES is
passed to hwloc_topology_set_flags() before load.
+ Add hwloc_ibv_get_device_osdev_by_name() OpenFabrics helper in
openfabrics-verbs.h to find the hwloc OS device object corresponding to
an OpenFabrics device.
* Tools
+ Add lstopo-no-graphics, a lstopo built without graphical support to
avoid dependencies on external libraries such as Cairo and X11. When
supported, graphical outputs are only available in the original lstopo
program.
- Packagers splitting lstopo and lstopo-no-graphics into different
packages are advised to use the alternatives system so that lstopo
points to the best available binary.
+ Instruction caches are enabled in lstopo by default. User --no-icaches
to disable them.
+ Add -t/--threads to show threads in hwloc-ps.
* Removal of obsolete components
+ Remove the old cpuset interface (hwloc/cpuset.h) which is deprecated and
superseded by the bitmap API (hwloc/bitmap.h) since v1.1.
hwloc_cpuset and nodeset types are still defined, but all hwloc_cpuset_*
compatibility wrappers are now gone.
+ Remove Linux libnuma conversion helpers for the deprecated and
broken nodemask_t interface.
+ Remove support for "Proc" type name, it was superseded by "PU" in v1.0.
+ Remove hwloc-mask symlinks, it was replaced by hwloc-calc in v1.0.
* Misc
+ Fix PCIe 3.0 link speed computation.
+ Non-printable characters are dropped from strings during XML export.
+ Fix importing of escaped characters with the minimalistic XML backend.
+ Assert hwloc_is_thissystem() in several I/O related helpers.
+ Fix some memory leaks in the x86 backend for FreeBSD.
+ Minor fixes to ease native builds on Windows.
+ Limit the number of retries when operating on all threads within a
process on Linux if the list of threads is heavily getting modified.
paexec:
- Option -x was added. With its help paexec can run one command
per task. If -g is also specified, command's exit status is
analysed. Appropriate task and dependants are marked as "failed"
if it is non-zero.
- First character of -n argument must be alphanumeric, `+', `_',
`:' or `/'. Other symbols are reserved for future extentions.
- With '-n :filename' paexec reads a list of nodes from the
specified file.
- With a help of new option '-m t=<eot>' end of task string
may be specified, which is an empty line by default.
- Option -md=<delim> was added that overrides the default
delimiter (space character) between tasks in graph mode (-g).
- Output line that contains failed dependants no longer ends with
unnecessary space.
- Long options were completely removed.
paexec_reorder:
- Fix. "paexec_reorder -g" now handles correctly failed tasks'
output. One extra line after "fatal" is expected.
- Options -m was added. It does the same things as paexec's -m.
More examples of use and regression tests.
Documentation update, clean-ups and improvements.
Regression tests:
- Signals handling was fixed in.
- LC_ALL is always set to C in regression tests, this fixes some
problems in internationalized environment.
mk-configure>=0.23.0 is required at build time
