Commit graph

5253 commits

Author SHA1 Message Date
markd
f29b287b14 py-scikit-image: update to 0.18.1
This is a bug fix release and contains the following two bug fixes:

* Fix indexing error for labelling in large (>2GB) arrays
* Only use retry_if_failed with recent pooch
2021-02-24 20:05:36 +00:00
markd
d4e08df1ef py-scikit-image: add needed dependency on py-tifffile 2021-02-24 19:59:07 +00:00
pin
735771ca15 math/kalk: update to 0.3.14
-Important xy^z precedence fix, and some minor polishing
2021-02-23 14:48:11 +00:00
mef
b836812dc7 (*/hs-*) BUILDLINK_API_DEPENDS.ghc <8.10, again 2021-02-18 15:07:26 +00:00
wiz
bc3484ceb2 libnumbertext: update to 1.0.7.
2021-01-31: 1.0.7 release:
	* ga.sor: new module Irish by László Németh
	* lg.sor: new module Luganda by Phillip Samuel
	* mr.sor: new module Marathi by Ankur Heramb Joshi
	* mt.sor: new module Maltase by László Németh

	* fi.sor: fix ordinal 0, bug report by Tuomas Hietala
	* hu_Hung.sor:
		- fix transliteration of Vörösmarty, bug report by Zoltán Óvári
		- replace ü and ű by Viktor Kovács
		- fix transliteration of dates with affixation
	* th.sor: fix big (>999,999) numbers by Vladislav Kiper
	* ua.sor: fix euro cent, bug report by Kty0mka
2021-02-18 10:20:30 +00:00
schmonz
74e2ac8d8d Update to 20190516. From the changelog:
Benchmarking:
- Speed tests now call cpucycles() before setting resource limits. This
  is important on platforms where cpucycles() needs to read files.

Verification:
- Support for SignExt and several more peephole optimizations, working
  towards support for simpler symbolic-execution backend. Various
  updates to work with angr8 and python3.
2021-02-18 10:08:31 +00:00
gdt
d4ee0b3dcf math/bc-gh: Update to 3.3.0
## 3.3.0

This is a production release that changes one behavior and fixes documentation
bugs.

The changed behavior is the treatment of `-e` and `-f` when given through
`BC_ENV_ARGS` or `DC_ENV_ARGS`. Now `bc` and `dc` do not exit when those options
(or their equivalents) are given through those environment variables. However,
`bc` and `dc` still exit when they or their equivalents are given on the
command-line.
2021-02-17 16:51:17 +00:00
gdt
0bd72f70b0 bc-gh: Update to 3.2.7
Note that "DC_ENV_ARGS" will lead to dc exiting; this was new in 3.1.4
and I have reported that upstream.

Upstream changes, less bugfixes (and hence first/second do not make
sense; see the full NEWS.md in the sources if that upsets you):

## 3.2.5

This is a production release that fixes several bugs and adds a couple small
things.

The two most important bugs were bugs that causes `dc` to access memory
out-of-bounds (crash in debug builds). This was found by upgrading to `afl++`
from `afl`. Both were caused by a failure to distinguish between the same two
cases.

Fourth, the pseudo-random number now attempts to seed itself with `/dev/random`
if `/dev/urandom` fails.

## 3.2.0

This is a production release that has one bug fix and a major addition.

The major addition is a way to build a version of `bc`'s math code as a library.
This is done with the `-a` option to `configure.sh`. The API for the library can
be read in `./manuals/bcl.3.md` or `man bcl` once the library is installed with
`make install`.

This library was requested by developers before I even finished version 1.0, but
I could not figure out how to do it until now.

If the library has API breaking changes, the major version of `bc` will be
incremented.

## 3.1.4

This is a production release that fixes one bug, changes two behaviors, and
removes one environment variable.

The behavior that was changed is that `bc` now exits when given `-e`, `-f`,
`--expression` or `--file`. However, if the last one of those is `-f-` (using
`stdin` as the file), `bc` does not exit. If `-f-` exists and is not the last of
the `-e` and `-f` options (and equivalents), `bc` gives a fatal error and exits.

Next, I removed the `BC_EXPR_EXIT` and `DC_EXPR_EXIT` environment variables
since their use is not needed with the behavior change.

Finally, I made it so `bc` does not print the header, though the `-q` and
`--quiet` options were kept for compatibility with GNU `bc`.
2021-02-15 18:20:56 +00:00
gdt
8069fc060a math/c-gh: DRop comment about missing NEWS
Upstream has created a plaintext NEWS.md.
2021-02-15 01:07:24 +00:00
taca
507beb7f32 Mark these packages Ruby 3.0 incompatible 2021-02-14 15:09:29 +00:00
mef
09719b7f5f (*/hs-*) fix build, not adapted to ghc90 version 2021-02-13 08:00:57 +00:00
pin
f210fccc49 Add funst 2021-02-12 06:51:16 +00:00
pin
63644ea8fc math/funst: import package
funst is a tiny command-line tool to calculate fundamental statistics of
numbers given via the standard input.
2021-02-12 06:50:22 +00:00
markd
1a151c5604 math: +tex-lualatex-math{,-doc} 2021-02-12 03:19:28 +00:00
markd
a5f8bea727 tex-lualatex-math{,-doc}: add version 1.9
from Yorick Hardy in pkgsrc/wip

The package patches a few commands of the LaTeX2e kernel and
the amsmath and mathtools packages to be more compatible with
the LuaTeX engine. It is only meaningful for LuaLaTeX documents
containing mathematical formulas, and does not exhibit any new
functionality. The fixes are mostly moved from the unicode-math
package to this package since they are not directly related to
Unicode mathematics typesetting.
2021-02-12 03:18:12 +00:00
nia
320d0282f8 gnumeric: Update to 1.12.48
Gnumeric 1.12.48

Andreas:
	* Add axis title to chart in histogram tool. [#408]
	* Fix line end marker roundtrip through strict ODF
	* Improve export of line markers to ODF for interoperability
	* Improve line marker handling on import
	* Fix LaTeX export. [#489]
	* When reading an ODF file make all sheets of equal size. [#505]

Jean:
	* Fix xlsx object non-import crash.
	* Fix in-place graph data problem.  [#492]
	* Port to Python3. [#419]

Morten:
	* Fix performance issue with sample_datasource.  [#491]
	* Fix partial-line issue with sample_datasource.
	* Fix load of in-place graph data with extra ()s.  [#492]
	* Fix Ctrl-; cursor position.  [#494]
	* Fix ssconvert --merge-to problem.  [#496]
	* Fix sheet size paste problem.  [#497]
	* Speed up really large auto-filters.  [#465]
	* Fix 2038 problem on quit.
	* Improve tests.
	* Improve dependency tracking for implicit intersection. [#501]
	* Fix format dialog issue.  [#503]
	* Re-tune style quad tree.  [#234]
	* Re-tune dependency bucket system.  [#502]
	* Fix global name parsing problem with non-uniform sheet sizing.
	* Avoid style dependency redraw during file load.
	* Tend to dead kittens.
	* Fix metadata dialog.  [#510]
	* Fix potential 64-bit problem with signals.
	* Fix GnmRange introspection.
2021-02-11 16:08:51 +00:00
adam
59f769729f py-asteval: updated to 0.9.21
0.9.21:
another important but small fix for Python 3.9

0.9.20:
doc update
2021-02-08 08:34:37 +00:00
adam
c198e96ab8 qhull: fix library name on Darwin 2021-02-07 15:23:47 +00:00
ryoon
bee3953c45 *: Recursive revbump from audio/pulseaudio-14.2.nb1 2021-02-07 06:30:06 +00:00
ryoon
42c0742634 libixion, py-libixion: Update to 0.16.1
Changelog:
0.16.1
    fixed a build issue on 32-bit linux platforms, caused by slicing
    of integer string ID values.

    worked around floating point rounding errors which prevented
    two theoretically-equal numeric values from being evaluated as
    equal in test code.


0.16.0
    documentation
	added quickstart sections for using model_context and
	document classes.

	added code example for cell_access class.

    C++ API
	added new function to allow printing of single formula
	tokens.

	added method for setting cached results on formula cells
	in model_context.

	changed the model_context design to ensure that all sheets
	are of the same size.

	added an accessor method to formula_model_access interface
	(and implicitly in model_context) that directly returns a
	string value from cell.

	added cell_access class for querying of cell states without
	knowing its type ahead of time.

	added document class which provides a layer on top of
	model_context, to abstract away the handling of formula
	calculations.

	deprecated model_context::erase_cell() in favor of
	empty_cell().

    formula parser / interpreter
	added support for 3D references - references that contain
	multiple sheets.

	added support for the exponent (^) and concatenation (&)
	operators.

	fixed incorrect handling of range references containing
	whole columns such as A:A.

	added support for unordered range references - range
	references whose start row or column is greater than their
	end position counterparts, such as A3:A1.

	fixed a bug that prevented nested formula functions from
	working properly.

	implemented Calc A1 style reference resolver.

    misc
	formula results now directly store the string values when
	the results are of string type. They previously stored
	string ID values after interning the original strings.

	removed build-time dependency on spdlog.
2021-02-06 06:23:22 +00:00
schmonz
6f57379122 Add and enable p5-Statistics-Basic. 2021-02-05 14:44:10 +00:00
schmonz
4cd17b58ed Initial import of p5-Statistics-Basic, a collection of basic statistics
modules for Perl.
2021-02-05 14:43:32 +00:00
pin
6ef35dcb9f math/kalk: update to 0.3.13
-Removed timeout from kalk_cli
2021-01-30 22:21:27 +00:00
taca
22211c4fd4 math/ruby-spreadsheet: update to 1.2.7
1.2.7 (2021-01-20)

* Remove .travis.ci, hoe, obsolete Warning
* Added GithubActions
2021-01-26 15:34:57 +00:00
ryoon
19cb5c8a9e qhull: Remove an unused patch 2021-01-24 07:24:58 +00:00
gdt
b070c3f8f4 revbump for qhull 2021-01-23 23:23:09 +00:00
gdt
ddce7322fc qhull: Update to 2020.2
pkgsrc changes: Remove non-installed examples with non-POSIX sh
constructs.

What would be in upstream NEWS:

  Qhull 2020.2 enhances the C++ interface with QhullUser and support for Voronoi diagrams.
  Qhull 2020.1 makes minor API changes
2021-01-23 23:19:16 +00:00
bsiegert
9956fb746f Revbump all Go packages after go115 update 2021-01-23 14:22:52 +00:00
jperkin
7d572000d7 qalculate: Explicitly use std::queue. 2021-01-14 11:20:05 +00:00
jnemeth
43eca55577 sort 2021-01-14 04:06:43 +00:00
pin
8e19bd99c7 Add kalk 2021-01-13 11:16:55 +00:00
pin
21be3fa1ce math/kalk: import package
Kalk is a calculator (both program and library) that supports user-define
variables, functions, and units (experimental).
2021-01-13 11:15:55 +00:00
adam
939aa0b239 py-numpy: updated to 1.19.5
1.19.5:
BUG: Fix segfault due to out of bound pointer in floatstatus...
BUG: fix np.timedelta64('nat').__format__ throwing an exception
BUG: Fixed file handle leak in array_tofile.
BUG: Raise recursion error during dimension discovery
BUG: Fix subarray dtype used with too large count in fromfile
BUG: 'bool' object has no attribute 'ndim'
BUG: ensure _UFuncNoLoopError can be pickled
BLD: use BUFFERSIZE=20 in OpenBLAS
BLD: update to OpenBLAS 0.3.13
BUG: make a variable volatile to work around clang compiler bug
REL: Prepare for the NumPy 1.19.5 release.
2021-01-09 09:29:41 +00:00
mef
e5996e6b23 (math/R) Ignore the warnings from autoreconf 2021-01-09 02:14:06 +00:00
wiz
cacebd738e erfa: fix HOMEPAGE. 2021-01-07 21:42:50 +00:00
wiz
0e48f74893 fftw*: update to 3.3.9
FFTW 3.3.9:

* New API fftw_planner_nthreads() returns the number of threads
  currently being used by the planner.

* Fix incorrect math in 128-bit generic SIMD

* Fix wisdom for avx512.

  The avx512 alignment requirement was set to 64 bytes, but this is
  wrong.  Alignment requirements are a property of the platform (e.g.,
  x86) and not of the instruction set (e.g., AVX).  Among other
  things, this broke wisdom with avx512.

  Note that avx512 support is still experimental because the FFTW
  authors have no avx512 hardware available for testing.

* fftw_threads_set_callback function to change the threading backend at runtime.
2021-01-04 10:27:37 +00:00
mef
0fad91489f (math/R-classInt) Updated 0.4.2 to 0.4.3, ChangeLog not updated (?) 2021-01-03 12:52:04 +00:00
mef
aa61e2507d (math/R-chron) Updated 2.3.53 to 2.3.56
2020-08-18  Kurt Hornik  <Kurt.Hornik@wu.ac.at>

        * DESCRIPTION: New version is 2.3-56.

        * R/zzz.R: Drop .onAttach().

        * R/y2k.R:
        * man/chron-internal.Rd:
        Changed the default cutoff when expanding a 2-digit year to a
        4-digit year from 30 to 69 (as for Date and POSIXct in base R.)

2020-02-02  Kurt Hornik  <Kurt.Hornik@wu.ac.at>

        * DESCRIPTION: New version is 2.3-55.

        * R/zzz.R (.onAttach): Add.

2019-08-13  Kurt Hornik  <Kurt.Hornik@wu.ac.at>

        * DESCRIPTION: New version is 2.3-54.

        * R/dates.R:
        Add as.dates().
        Suggestion by Gabor Grothendieck <ggrothendieck@gmail.com>.

2019-08-12  Kurt Hornik  <Kurt.Hornik@wu.ac.at>

        * NAMESPACE:
        * R/times.R:
        Add as.times().
        Suggestion by Gabor Grothendieck <ggrothendieck@gmail.com>.
2021-01-03 11:33:42 +00:00
mef
1b235d37ff (math/R-backports) Updated 1.1.4 to 1.2.1
# backports 1.2.1

* Adapted `get0()` to work with R-devel / R-4.1.0 for first argument having length greater than 1.

# backports 1.2.0

* Switched to semantic versioning.
* Added backport for `asplit()` for R versions prior to 3.6.0 (#47).
* Added backport for `removeSource()` which also supports language objects for R versions prior to 3.6.0 (#50).
* Added backport for `isNamespaceLoaded` for R versions prior to 3.2.0 (#49).


# backports 1.1.10
* Added `suppressMessages()` and `suppressWarnings()` with support for argument `classes` for R versions prior to 4.0.0

# backports 1.1.9
* Added backports for `str2lang()` and `str2expression()` (#42)
  Thanks to @dmurdoch.
* `import()` imported too many functions and has been fixed.

# backports 1.1.8
* Added backport for `tools::vignetteInfo()` for R versions prior to 3.6.0
* Fixed import of `list2DF()` and `deparse1()`

# backports 1.1.7
* Added backport for `deparse1()` for R versions prior to 4.0.0.
* Added backport for `list2DF()` for R versions prior to 4.0.0.

# backports 1.1.6
* Added backport for `R_user_dir()` for R versions prior to 4.0.0.
* Added `dQuote()` and `sQuote()` with support for argument `q` for R versions prior to 3.6.0.

# backports 1.1.5
* Changed license from GPL-2 to GPL-2 or GPL-3.
* Added backport for `isTRUE()` implementing the new behaviour introduced in R 3.5.0.
2021-01-03 11:30:46 +00:00
mef
43f4d19297 (math/R-akima) Updated 0.6.2 to 0.6.2.1, ChangeLog unknown 2021-01-03 11:23:32 +00:00
mef
b7da21108e (math/R-XML) Updated 3.98-1.20 to 3.99.0.5
Version 3.99-0

  *      We can specify R functions and C routines for use as XPath
         functions in calls to getNodeSet() and xpathApply().

 *      Implementations of XPath 2.0 functions matches(), lower-case(),
        ends-with(), abs(), min(), max(), replace()

Version 3.98-2

  *      xmlSave() of a document to a file with encoding now honors indenting.
         Uses xmlSaveFormatFileEnc(). Issue identified by Earl Brown.
2021-01-03 11:14:17 +00:00
mef
822d4e69f2 (math/R-SparseM) Updated 1.77 to 1.78 (make test fails for now)
The version 1.78

1.  Changed check for symmetry to use all.equal() in response to an error
reported by Brian Ripley.
2021-01-03 10:49:31 +00:00
mef
5e9c511918 (math/R-RcppEigen) Updated 3.3.5.0 to 3.3.9.1 (make test fails for now)
2020-12-17  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): CRAN Release 0.3.3.9.1 (following
	coordinated update of reverse dependency StanHeaders)
	* inst/NEWS.Rd: Release 0.3.3.9.1

2020-12-14  Dirk Eddelbuettel  <edd@debian.org>

	* .github/workflows/ci.yaml: Add CI runner using r-ci
	* README.md: Add new badge

2020-12-05  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.3.9.0

	* inst/include/Eigen: Upgraded to Eigen 3.3.9
	* inst/include/unsupported/Eigen: Idem
	* patches/eigen-3.3.9.diff: Carried local CRAN patches forward

	* .travis.yml: Switch to r-ci using focal and bspm

	* README.md: Updated URLs to https and/or redirect location
	* inst/CITATION: Idem
	* man/RcppEigen-package.Rd: Idem
	* man/fastLm.Rd: Idem

2020-08-16  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Add JSS badge

2020-03-29  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Added commit badge, edited

2020-01-22  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: README.md: Add a Debian badge

2019-11-16  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Version, Date): Release 0.3.3.7.0

	* inst/include/Eigen: Upgraded to Eigen 3.3.7
	* inst/include/unsupported/Eigen: Idem
	* patches/eigen-3.3.7.diff: Carried local CRAN patches forward

2019-11-01  Dirk Eddelbuettel  <edd@debian.org>

	* R/unit.test.R (compile_unit_tests): Removed as no longer needed

2019-10-31  Dirk Eddelbuettel  <edd@debian.org>

	* inst/tinytest/test_transform.R: Switch from RUnit to tinytest
	* inst/tinytest/test_wrap.R: Idem

	* inst/tinytest/cpp/transform.cpp: Added using Rcpp Attributes
	* inst/tinytest/cpp/wrap.cpp: Idem

	* inst/tinytest/cpp/sparse.cpp: More idiomatic Eigen code
	* inst/tinytest/test_sparse.R: Idem

	* .editorconfig: Added

2019-10-30  Dirk Eddelbuettel  <edd@debian.org>

	* DESCRIPTION (Suggests): Switch from RUnit to tinytest
	* .travis.yml (install): Ditto

	* tests/tinytest.R: Converted to tinytest

        * test_sparse.R: Converted to tinytest
	* cpp/sparse.cpp: Added using Rcpp Attributes

2019-10-29  Dirk Eddelbuettel  <edd@debian.org>

        * test_fastLm.R: Converted to tinytest
        * test_RcppEigen.R: Idem
        * test_solution.R: Idem

	* cpp/rcppeigen.cpp: Added using Rcpp Attributes
        * cpp/solution.cpp: Idem

2019-10-28  Dirk Eddelbuettel  <edd@debian.org>

	* tests/tinytest.R: Renamed from tests/doRUnit.R
	* inst/tinytest/test_fastLm.R: Renamed from inst/unitTests/runit*
	* inst/tinytest/test_RcppEigen.R: Idem
	* inst/tinytest/test_solution.R: Idem
	* inst/tinytest/test_sparse.R: Idem
	* inst/tinytest/test_transform.R: Idem
	* inst/tinytest/test_wrap.R: Idem

2019-10-13  Dirk Eddelbuettel  <edd@debian.org>

	* README.md: Added CRAN + BioConductor badges for reverse depends,
	add StackOverflow badge to recommend help searches under 'Rcpp'

	* DESCRIPTION (Version, Date): Roll minor version

	* R/RcppEigen.package.skeleton.R (RcppEigen.package.skeleton): Test for
	example_code outside of haveKitten test; remove force argument if unused

2019-05-24  Dirk Eddelbuettel  <edd@debian.org>

	* vignettes/RcppEigen-Introduction.Rnw: Update vignette to use
	RcppEigen:::eigen_version() instead of .Call()

2019-03-29  Dirk Eddelbuettel  <edd@debian.org>

	* inst/skeleton/rcppeigen_hello_world.cpp: Rework first example to
	not rely on Eigen RNG which R CMD check would complain about.

2019-02-16  James Joseph Balamuta <balamut2@illinois.edu>

	* R/runit.RcppEigen.R: Removed listing RcppEigen in Imports during
	skeleton package creation.
2021-01-03 10:04:58 +00:00
taca
9306b78e64 math/php-stats: update PHP version
Update supported PHP version; other than PHP 5.6.
2021-01-03 06:47:07 +00:00
mef
04ec1ed1c6 (math/R-Rcmdr) Updated 2.7.0 to 2.7.1
Changes in version 2.7-1

  o Updated Polish translation, thanks to Lukasz Daniel.

  o Fixed mixed-up .mo files for Spanish and Brazilian-Portuguese
  translations (problem reported by Jose Henrique Hildebrand Grisi
  Filho).

  o Small bug fixes to and improvements to repeated-measures dialogs.
2021-01-02 11:22:48 +00:00
mef
211ecdf1e2 (math/py-numba) regen PLIST 2021-01-01 13:29:16 +00:00
ryoon
bfac3f1b42 *: Recursive revbump from audio/pulseaudio-14.0 2021-01-01 09:52:09 +00:00
ryoon
a8e8c5c75e *: Recursive revbump from boost-1.75.0 2021-01-01 08:24:33 +00:00
nia
fb0858fdac maxima: Add missing PLIST entry.
From Chavdar Ivanov via pkgsrc-users.
2020-12-26 11:04:48 +00:00
mef
c01680e0f8 (math/py-astroquery) Fix typo py-astro{4,} 2020-12-22 22:03:56 +00:00