Fix building math/z3 in privileged mode when not building as root:
ocamlfind: Cannot mkdir /usr/pkg/lib/ocaml/site-lib/Z3: Permission denied
This now uses the option -destdir when calling ocamlfind(1). It also
includes a workaround for what might be a bug in ocamlfind(1), where it
also wants to update ld.conf in spite of specifying -destdir.
Tested on NetBSD/amd64.
ok dholland@
NumPy 1.14.1 Release Notes
This is a bugfix release for some problems reported following the 1.14.0 release. The major
problems fixed are the following.
Problems with the new array printing, particularly the printing of complex
values, Please report any additional problems that may turn up.
Problems with np.einsum due to the new optimized=True default. Some
fixes for optimization have been applied and optimize=False is now the
default.
The sort order in np.unique when axis=<some-number> will now always
be lexicographic in the subarray elements. In previous NumPy versions there
was an optimization that could result in sorting the subarrays as unsigned
byte strings.
The change in 1.14.0 that multi-field indexing of structured arrays returns a
view instead of a copy has been reverted but remains on track for NumPy 1.15.
Affected users should read the 1.14.1 Numpy User Guide section
"basics/structured arrays/accessing multiple fields" for advice on how to
manage this transition.
Changes from version 4.0.0 to version 4.0.1:
- Improved MPFR manual.
- Improved __GMP_CC and __GMP_CFLAGS retrieval (in particular for MS Windows).
- Fixed a build failure on some platforms when --with-gmp-build is used.
- Bug fixes (see ChangeLog file), in particular in mpfr_div_ui, which
could yield an incorrectly rounded result to nearest when using
different precisions; this bug had been present since the introduction
of mpfr_div_ui, and in MPFR 4.0.0, it was affecting mpfr_div too.
- New: optional "make check-exported-symbols", mainly for the MPFR developers
and binary distributions, to check that MPFR does not define symbols with a
GMP reserved prefix (experimental).
Upstream changes:
0.78 - 29 Jan 2018, H.Merijn Brand
* Spreadsheet::ParseExcel supports the active flag as of version 0.61
* Fix typo in docs (SPROUT, RT#124214)
0.77 - 22 Jan 2018, H.Merijn Brand
* Note possible name clashes with example/tool files
* Clipping and stripping more efficient
The mpfr configure script detects float128 support on NetBSD-7/x86_64,
and mpfr itself builds successfully with it, but other packages that
link with it, such as print/web2c, then fail to link with undefined
references to __floatunditf among other symbols. Work around this by
passing --disable-float128 to the configure script.
Changes:
o 'ylim' values passed to 'addSeries' and 'addPolygon' via '...' are now
captured and honored.
o 'addPolygon' now checks for ylim of zeros, as 'addSeries' does.
o The 'base::as.Date.numeric' method is no longer over-ridden. The exported,
but not registered, method in zoo should prevent any change in behavior.
o Series added to an existing plot are now given the same index values as
the main panel. There still may be some weird behavior if the new
data does not have observations within the timespan of the main panel data,
but no observations on the same timestamps.
o Existing 'par' values are now captured and reset before returning from
plotting functions.
o User-defined 'col' values are now honored when 'type="h"'.
o Values passed to plotting functions are now copied from the calling
environment. This enables plotting arguments to be objects passed
through multiple layers of function calls.
o Calling as.matrix() on a zero-width xts object now behaves consistently
with zoo, and no longer throws an error.
o Fix weird result in merge.xts() when 'fill' argument is NULL or a zero-
length vector.
o Fixed bug in endpoints() due to sub-second representation error via using
integer division (%/%) with non- integer arguments.
o endpoints() gained sub-second accuracy on Windows.
o plot.xts() no longer errors when called on an object containing a constant
value. It chooses ylim values +/-20% from the series value.
o plot.xts() now places y-axis labels in the same location on the plot,
regardless of data periodicity.
o rbind.xts() now throws an error if passed an xts object with different
number of observations in the index and data (e.g., zero-width).
Changes:
o New .DollarNames method (contributed by Josh Ulrich) to enable tab
completion when using zoo_object$...
o New default method for zoo::as.Date() that simply dispatches to
base::as.Date().
o rollapply(x, k, FUN, align = "right") lead to an error if length(x) < k.
This has been corrected to match the behavior of the other align types.
o rollmean(), rollsum(), rollmedian(), and rollmax() no longer throw an
error if the series is shorter than the window size. Instead rollapply()
is called which either returns an empty series (if "fill" is not specified)
or a padded series (if "fill" is specified, e.g., to NA).
o read.zoo() now also handles "tbl" objects by coercing them to proper
"data.frame"s first. Also gained a read = read.table argument to simplify
convenience interfaces read.csv.zoo() etc.
o The fortify() method gained a "names" argument so that the column names
of the (melted) series can be modified.
Changelog:
commit 789a08ebc3e7fc2a3914fc34b2497bf476952bfc
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Aug 15 19:18:03 2017 -0400
Update the changelog.
commit bc55f21bbefc4ca9e73164453c60c859cd8ec5dc
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Aug 15 19:10:39 2017 -0400
Up the version to 0.13.0.
commit 1bee3e9977e10818b75c7f44fcaaa9fa1aa49801
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Aug 4 21:23:17 2017 -0400
Another failing test case and a fix for it.
commit 9819ad4284d173e81106d4dd55a67ab2048dd8d3
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Aug 4 21:06:14 2017 -0400
With this change, the newly-added test now passes.
commit 1e57b24c3acb9797847eed776d92750c8fc2afc0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Aug 3 20:58:58 2017 -0400
Add a test that currently fails.
commit 7a075c84cfe4a1963d18c107004200c87c7e9b73
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Jul 13 18:29:09 2017 -0400
Remove code duplicates.
commit 352b95e4adf49a697166313fa590068553a8cc05
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Jul 13 17:51:44 2017 -0400
Test boolean values with SUM.
commit bc7b844c203e5a0cd8dd9ebd68f8452a1cba8dba
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Jul 13 17:50:15 2017 -0400
Get boolean values to work in COUNTA function.
commit 2f488e2af2353e52be14222b01f525b556758cfe
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jul 12 21:48:04 2017 -0400
cmake: enable parallel build with MSVC backend.
commit beb852797fc2232c93a89719a4a95421fac8c304
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jul 12 21:39:19 2017 -0400
cmake: silence some known compiler errors for MSVC.
commit 7687a5a674c84503a01f47c56a1808cbf6c45d0e
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jul 12 21:07:43 2017 -0400
Add initial boolean value type support.
Still experimental, and not all corner cases are expected to be
working.
commit 1cdb0489d2b825c04079e5ac38940df75c409aca
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jul 12 18:45:03 2017 -0400
More descriptive exception message.
commit 7a92289de22b9be106cdb9bf8e9a19bc6f12669c
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Jun 8 16:47:16 2017 -0400
Tweak the wording a bit.
commit 14b28d947ae04be1d13469461b055a1b28ef73b0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 21:24:25 2017 -0400
Add a contribution guide.
commit 8b22a794a3b4545748e06367ac64fb118f2a0b10
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 21:12:59 2017 -0400
cmake: add ixion-sorter and ixion-formula-tokenizer executables.
commit 4abf226d052663f42ba9c2433a04033758f96824
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 21:03:38 2017 -0400
cmake: add ixion-parser target.
And fix one build error.
commit ffb9ad7e66285526ca8b2a97f8164b90cc31ba8d
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 20:40:03 2017 -0400
cmake: define necessary compiler definitions for a DLL build.
commit 3270d6b1f541fc011da062942cb96ac02d690712
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 20:27:23 2017 -0400
Perform pre-build file generation the same way autoconf does.
We need this for non-autoconf build system i.e. cmake.
commit 31495ad282df5acc66e9b8d40fbdd4e7095572d7
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 18:40:56 2017 -0400
Fix the build on vs2017.
commit 699333f0b227ccde92271cf83719180cda835ebd
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jun 7 17:49:11 2017 -0400
cmake: add all the source files for libixion target.
Still not buildable.
commit c1f85fe0c245c56736a192456feceeb185ecc553
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 04:21:59 2017 +0200
fix missing header include
commit d300ed3caadba1f73a30000280477f059f300418
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 04:10:55 2017 +0200
we might no longer need the old ABI
commit 7212efdbd79c4af43588cfd68886d2c0795a930b
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 03:52:51 2017 +0200
more debugging help
commit aa1c9681a77f71fdefe794b9fc124679ab56cbc4
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 03:48:15 2017 +0200
help in debugging failure in ci job
commit bd73d17226c751ae4fc7b3dbc8697d26f109d8ea
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 03:30:09 2017 +0200
recognize gcc 5.4 and gcc 6.3 in boost.m4
commit 927808c7d6d4a78acb824d1416f3c86bb3766176
Author: Markus Mohrhard <markus.mohrhard@googlemail.com>
Date: Thu Jun 8 03:25:25 2017 +0200
update boost.m4
commit 432ed93f59c0cbe764cc3718bc7f653f99ca71b1
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 9 21:30:18 2017 -0500
Support named expression parsing with Excel R1C1.
commit a726d8d64a441ad6febc6797e4f1152adaf0ae32
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Feb 7 19:33:36 2017 -0500
When the sheet name is given and isn't found in the model, it's invalid.
commit 150e0ac7793e8ed6aea10a18c1fc92fd841a2480
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Feb 6 21:50:08 2017 -0500
parse_formula_string() and print_formula_tokens() to return value.
With C++11's move semantics, this makes more sense...
commit a21ee8087c2d18f7b52f5a4cf1045e79b7a804fa
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 21:50:09 2017 -0500
Add test case to handle invalid name error.
commit 10e9a8c9f69c2ebe60accc38c78eee83b4f2388e
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 21:49:38 2017 -0500
Handle '#NAME?' error in the formula result.
commit 0a7a8b2c6727d6d2d017324e5beaf9cdba4a7bd0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 21:14:28 2017 -0500
Fix wrong error message.
commit cbc4fb5c9d131d6f038c6d74836d597309cee3b4
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 21:08:12 2017 -0500
Use parse_assignment() method to simplify the code a bit.
commit edb4f8853fa580c08296aae38d21e89547ee8092
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 20:15:25 2017 -0500
Generate #NAME? error on non-existing named expression.
commit 3b5c7a37c6f136932eaad6c554537dc28d19b7c5
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 18:55:51 2017 -0500
Throw a more specialized exception for non-existing named expression.
commit 4e069dbf47c29c0523b033ad283fff6b0ee626da
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 18:36:46 2017 -0500
Let's remove this. This has become bit-rotted.
commit 36f578bccfe73ade51b9176453951a4e5643ac0b
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 18:35:23 2017 -0500
Add new error type for #NAME?.
commit 2c83e6fb3c7d498a07aeff719b5fbaa34cb35563
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 18:25:04 2017 -0500
Print named expression names.
commit c57d435fca8163d0fbab849183c924c51d4e4fc6
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 18:20:24 2017 -0500
Print individual token data via formula-tokenizer.
commit 079b58d8ca2097c73b410d8064d26d5dbf1d9065
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Feb 3 17:31:45 2017 -0500
Make sure the 'exit' command really exits.
commit 12768b2c7f7ccecbf6b6bc5b2a81cdb0a33b82a4
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 22:32:18 2017 -0500
Check the sheet index against the sheet count.
commit f5a72147fe4f46ea16ce061c4071054fa723a67c
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 22:17:12 2017 -0500
We can't assume that mp_cxt is never nullptr.
commit 7aef80602ad02e2bac0f200b5319e8cca7f58a8f
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 21:13:32 2017 -0500
We don't need this interface method now.
commit b55d48d1c39cdbf811d8fac556d47f4a546fd674
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 20:29:48 2017 -0500
Check the results and test the recalc after editing.
Now I can add this to the official list of test cases.
commit 4ae122f9d9af80e067ed6a1ecd4899d90c1a0ba0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 20:12:56 2017 -0500
Pass the "show sheet name" flag to the session handler too.
commit 3f60def1bf25d3cab79bc12c7d8a87a69ff19639
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Feb 2 18:36:58 2017 -0500
Test file for sheet-local named expression.
commit d64f1b93f8fdb36b708e8755cbab6d8c5432c71a
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Feb 1 18:45:37 2017 -0500
Handle sheet-local named expressions.
commit 01debe03a12d5b672630063f4e072d8ea6a31c74
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 30 22:44:45 2017 -0500
Add new session command to toggle sheet name display.
commit 0bdd9bd21f8dd7442a75619c63392c339a187382
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 22:18:33 2017 -0500
Use override keywords.
commit 0ca4162e1650d9a47d52d858ef746435bb85d2d1
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 22:13:34 2017 -0500
Make this test case an official part of the test collection.
commit d01a86a5ca8db35f7a980acec43aacefe71760e8
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 22:12:48 2017 -0500
Test for editing and re-calculation.
commit 7e64bbe109eabcdfd78f2f5db5727da36753dade
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 20:04:22 2017 -0500
Make sure that address position outside the sheet boundaries is invalid.
commit b38de9a120440cd1f964d57108876ec75142c688
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 19:26:29 2017 -0500
Ensure that the column value won't overflow.
commit db8837fa7bf43b67793f02a9a144076607cf0a41
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 19:04:16 2017 -0500
Add test for named expressions.
It currently fails on 'MyRange2'.
commit 9417577fa8a78df5657df3cf2c6d10fe785d8f9b
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 25 16:38:48 2017 -0500
Remove bitrotted debug code...
commit 71f5957549e7de302c419fc848b8269167b21aa2
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Jan 24 23:00:29 2017 -0500
Refactor a bit to expand named expression during reference retrieval.
commit a50d0c8f7e73960e6049db95dd9521caa1b656d0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Jan 24 21:28:08 2017 -0500
And push the named expression into the model for real.
commit 9cb27dedabb4ba99ef6c77b7ddab2ee718bd91c0
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Thu Jan 19 22:20:37 2017 -0500
Parse the named expression block.
Next step is to push it into the model.
commit d0f40e3d3f4f07586b7c784f7b381eaeabd453b6
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 18 18:45:39 2017 -0500
Store formula_tokens_t for named expression instead of formula_cell.
And this will bump up the API version.
commit b1997764afc3c8660a5f9b90f68a6ea455cb8b2e
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Wed Jan 18 18:18:54 2017 -0500
Parse named expression blocks.
commit 1c13ab7efd9f5f5d128b298ae670671ffb6f5ea2
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Jan 17 21:44:37 2017 -0500
Parse session block.
commit 7f91f8389cade81691b09bd5f45bd7ef43525219
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Tue Jan 17 20:36:10 2017 -0500
Refactor the model parser a bit...
commit f5b7e16ac36b052b2e33a7d3eb21e00826b511a5
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 22:46:40 2017 -0500
Test file that I need to support. It doesn't work yet.
commit 66f8238d7309165ddd005a2b7ddcb024a388e798
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 22:46:16 2017 -0500
Prepare for upcoming session mode.
commit 26cb9b2d026a185841def623aba01d5c9d3e7ee9
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 22:20:14 2017 -0500
Require an explicit 'exit' command.
commit da294fc2d80772b4cdc43e23595cb23d619a4760
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 19:59:38 2017 -0500
Implement setters for the sheet-local named expressions.
commit 16353df35408c3c6f6afd7727ad9d2dc6ecd1a3a
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 18:47:11 2017 -0500
Implement getter methods for sheet-local named expressions.
commit 3d7e11aef952947c4c1041c5149bd7fb042620ba
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Mon Jan 16 18:07:47 2017 -0500
Move the named expression type into a common place.
commit 5fed7a42cc4582ba785074661248e52d07d4f32d
Author: Kohei Yoshida <kohei.yoshida@gmail.com>
Date: Fri Jan 13 19:51:37 2017 -0500
Add rudimentary formula string tokenizer.
Use for debugging.
Notable changes:
- Immediate deprecation of Yahoo!, Google Options and Quotes and
EDGAR. The end points behind these APIs have radically changed and
the existing readers require complete rewrites. In the case of most
Yahoo! data the endpoints have been removed. PDR would like to
restore these features, and pull requests are welcome.
- A new connector for Tiingo was introduced. Tiingo provides
historical end-of-day data for a large set of equities, ETFs and
mutual funds. Free registration is required to get an API key.
- A new connector for Robinhood was introduced. This provides up to 1
year of historical end-of-day data. It also provides near real-time
quotes.
- A new connector for Morningstar Open, High, Low, Close and Volume
was introduced.
- A new connector for IEX daily price data was introduced.
- A new connector for IEX the majority of the IEX API was introduced.
- A new data connector for stock index data provided by Stooq was
introduced.
- A new data connector for data provided by the Bank of Canada was
introduced.
NetworkX 2.1
Highlights
This release is the result of four months of work with 75 pull requests by
37 contributors. Highlights include:
- Arrows for drawing DiGraph edges are vastly improved!
And an example to show them.
- More than 12 new functions for graph generation, manipulation and/or
new graph algorithms.
- Add a large clique size heuristic function
- Add rooted product function
- Label Propagation Community Detection
- Minimum cycle basis
- Add Mycielski Operator
- Adds prefix_tree, dag_to_branching, and example.
- Add inverse_line_graph generator
- Steiner tree and metric closure.
- Add flow based node and edge disjoint paths.
- Update geometric networks with new models
- Graph edit distance
- Added function for finding a k-edge-augmentation
- G.name is no longer processed by graph operators. It remains as a
property mechanism to access ``G.graph['name']`` but the user is in
charge of updating or changing it for copies, subgraphs, unions and
other graph operations.
Improvements
- Many bug fixes, documentation changes.
- Speed improvements especially for subgraphs.
- Changed input variable names for functions using ``**kwds``
to avoid name collisions -- especially ``add_node``
- New examples for arrows and spectral embedding of the grid graph.
This package provides density, probability, and quantile functions,
and random number generation for (skew) stable distributions, using
the parametrizations of Nolan.
Gnumeric 1.12.38
Morten:
* Avoid large stack use here and there.
* Test suite improvements.
* Improve sylk writer. Don't ask.
* Teach ssdiff about column/row sizes.
* Teach ssdiff about defined names.
* Fix a few ssdiff crashes.
* Fix crash on text import.
--------------------------------------------------------------------------
Gnumeric 1.12.37
Morten:
* Test suite improvements.
* Improve format guessing for newly entered formulas.
* Improve PERMUTATIONA for unusual arguments. [#790742]
* Extend range of NT_PI.
* Improve xlsx export of cell comments. [#790756]
* Plug leaks.
* Fix potential crash on exit.
* Speed-up number theory functions.
* Fix combo object icon.
* Code cleanups for main binary.
* Fix potential crash in gtk scroll bar bug workaround.
* Avoid large stack use here and there.
Changes from versions 3.1.* to version 4.0.0:
- The "dinde aux marrons" release.
- MPFR now depends on GMP 5.0+ instead of 4.1+.
- API change:
Applications that call GMP's mp_set_memory_functions function to change
the allocators must first call the new function mpfr_mp_memory_cleanup
in all threads where MPFR is potentially used; this new function is
currently equivalent to mpfr_free_cache.
The reason is that the way memory allocation is done by MPFR has changed
(again), so that the current GMP allocators are used (since for some
applications, the old allocators may become invalid).
Note: Freeing the caches like this might have a performance impact on some
particular applications; if this is an issue, this could be handled for a
future MPFR version.
- Mini-gmp support via the --enable-mini-gmp configure option (experimental).
- The minimum precision MPFR_PREC_MIN is now 1, with rounding defined as
in the errata of IEEE 754-2008 and in the following IEEE 754 revision
(ties rounded away from zero).
- Shared caches for multithreaded applications.
New function mpfr_free_cache2.
- Partial support of MPFR_RNDF (faithful rounding).
- New functions: mpfr_fpif_export and mpfr_fpif_import to export and import
numbers in a floating-point interchange format, independent both on the
number of bits per word and on the endianness.
- New function mpfr_fmodquo to return the low bits of the quotient
corresponding to mpfr_fmod.
- New functions mpfr_flags_clear, mpfr_flags_set, mpfr_flags_test,
mpfr_flags_save and mpfr_flags_restore to operate on groups of flags.
- New functions mpfr_set_float128 and mpfr_get_float128 to convert from/to
the __float128 type (requires --enable-float128 and compiler support).
- New functions mpfr_buildopt_float128_p and mpfr_buildopt_sharedcache_p.
- New functions mpfr_rint_roundeven and mpfr_roundeven, completing the
other similar round-to-integer functions for rounding to nearest with
the even-rounding rule.
- New macro mpfr_round_nearest_away to add partial emulation of the
rounding to nearest-away (as defined in IEEE 754-2008).
- New functions mpfr_nrandom and mpfr_erandom to generate random numbers
following normal and exponential distributions respectively.
- New functions mpfr_fmma and mpfr_fmms to compute a*b+c*d and a*b-c*d.
- New function mpfr_rootn_ui, similar to mpfr_root, but agreeing with the
rootn function of the IEEE 754-2008 standard.
- New functions mpfr_log_ui to compute the logarithm of an integer,
mpfr_gamma_inc for the incomplete Gamma function.
- New function mpfr_beta for the Beta function (incomplete, experimental).
- New function mpfr_get_q to convert a floating-point number into rational.
- The mpfr_dump function is now described in the manual; its output format
has slightly changed.
- The mpfr_eint function now returns the value of the E1/eint1 function
for negative argument.
- The behavior of the mpfr_set_exp function changed, as it could easily
yield undefined behavior in some cases (this modifies both the API and
the ABI).
- In function mpfr_urandom, the next random state no longer depends on the
current exponent range and the rounding mode. The exceptions due to the
rounding of the random number are now correctly generated, following the
uniform distribution.
- Functions mpfr_grandom and mpfr_root are deprecated and will be removed
in a future release.
- Complete rewrite of function mpfr_sum, which now works in all cases (the
old one could take all the memory and/or crash with inputs of different
magnitudes in case of huge cancellation or table maker's dilemma). The
sign of an exact zero result is now specified, and the return value is
now the usual ternary value. Note that the position of "const" in the
mpfr_sum prototype has been fixed (the manual was correct); user code
should not be affected.
- Old, deprecated macros mpfr_add_one_ulp and mpfr_sub_one_ulp removed.
The mpfr_next* functions should be used instead.
- Internally, improved caching: a minimum of 10% increase of the precision
is guaranteed to avoid too many recomputations.
- Added internal small-precision mpz_t pool, which aims to avoid the
overhead of memory allocation, in particular.
New function mpfr_free_pool.
- Added configure option --enable-assert=none to avoid checking any assertion.
- The --enable-decimal-float configure option no longer requires
--with-gmp-build, and support for decimal floats is now automatically
detected by default (similarly for support for __float128).
- Updated tuning parameters.
- Better support for Automake 1.13+ (now used to generate the tarball).
- Dropped K&R C compatibility.
- Improved MPFR manual.
- New MPFRbench program (see the tools/bench directory).
- Major speedup in mpfr_add, mpfr_sub, mpfr_mul, mpfr_div and mpfr_sqrt when
all operands have the same precision and this precision is less than twice
the number of bits per word, e.g., less than 128 on a 64-bit computer.
- Speedup by a factor of almost 2 in the double <--> mpfr conversions
(mpfr_set_d and mpfr_get_d).
- Speedup in mpfr_log1p and mpfr_atanh for small arguments.
- Speedup in the mpfr_const_euler function (contributed by Fredrik Johansson),
in the computation of Bernoulli numbers (used in mpfr_gamma, mpfr_li2,
mpfr_digamma, mpfr_lngamma and mpfr_lgamma), in mpfr_div, in mpfr_fma
and mpfr_fms.
- Test coverage: 96.3% lines of code.
- Bug fixes. In particular: a speed improvement when the --enable-assert
or --enable-assert=full configure option is used with GCC; mpfr_get_str
now sets the NaN flag on NaN input and the inexact flag when the conversion
is inexact. For a full list, see http://www.mpfr.org/mpfr-3.1.6/#fixed
and the same section for any previous 3.1.x version (follow the links
in the "Changes..." sections).
- Microsoft Windows: Added support for thread-safe DLL (shared library).
Tested with MinGW, ICC and MSVC.
- Limited pkg-config support.
- Autotools: Under Linux, make sure that the old dtags (when supported)
are used if LD_LIBRARY_PATH is defined; otherwise "make check" would
check an installed, compatible MPFR library found in LD_LIBRARY_PATH
instead of the one that has been built with "make".
- New: optional "make check-gmp-symbols", mainly for binary distributions,
to check that MPFR does not use GMP internal symbols (experimental).
Vector generalized linear and additive models, and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This
package fits many models and distribution by maximum likelihood
estimation (MLE) or penalized MLE. Also fits constrained ordination
models in ecology.
Packaged by Mike M. Volokhov, and updated by Kamil Rytarowski and me.
Add missing DEPENDS
Upstream changes:
Changes to Version 2.1-6
o Made several functions compatible with vcov() in R-devel (3.5.0).
Changes to Version 2.1-5
o Fixed bug in boot.hist, and made Boot.default more general. Added a vcov method for boot objects
o Fixed bug in gamLine with non-dentity links.
o Removed the skewPower transformation functions, and added bcnPower transformation family. Same transformation, new name, new computational algorithms, improved documentation.
o Fixed bug (reported by Bruno Hebling Vieira) in print.summary.Anova.mlm() that could cause adjusted p-values to be incorrectly ordered.
Changes to Version 2.1-4
o The smoother functions loessLine, gamLine and quantregLine used in many car functions now evaluate the smoother at an equally spaced grid of points rather than at the observed values on the horizontal axis of a plot.
o spreadLevelPlot.lm now accepts point marking as in most other graphical functions in car.
o Bug fixed in one of the skewPower support functions; thans to Balazs Banfai
o Added support for lmer objects in power transformations
o Added support for skewPower family power transformations for lm and lmer objects
o Added list, data.frame, and matrix methods for Boxplot(), suggestion of Michael Friendly
o Added adaptiveKernel() density estimator, with option to use it in densityPlot().
Changes to Version 2.1-3
o Corrected documentation for mcPlots
o added id.location argument to showLabels to vary location of labels
o added fix for compatiblity with Rcmdr with missing data in several plotting functions.
o deltaMethod() now reports confidence intervals.
o print.summary.Anova.mlm() has new SSP and SSPE arguments to determine whether the corresponding matrices are printed (suggestion of Michael Friendly).
o summary() and print() methods for Anova.mlm() can now report univariate ANOVAs (suggestion and some code by Michael Friendly).
o added "value" and "vcov" attributes to objects returned by linearHypothesis() (after suggestions by Liviu Andronic and Steven Yen).
o compareCoefs() now checks classes of models.
o small fixes/changes.
Changes to Version 2.1-2
o Modified scatter3d() so that plots can be embedded in HTML.
Changes to Version 2.1-1
o influencePlot now returns Cook's distance, not its square root.
o Anova() now supports "coxme" objects (produced by coxme() in coxme package) (request of Philipp Sprenger).
o Anova() now works via its default method with "vglm" objects produced by functions in the VGAM package; and the default method of linearHypothesis() again works with these objects (problem reported by Michael Friendly).
o Fixed Anova.coxph() so that it takes account of method (ties) argument (bug reported by Karl Ove Hufthammer).
o Improvements to Anova.default() so that a wider variety of model classes are accommodated (following request of Liviu Andronic.)
o dataEllipse() now throws an error if there are too few colors for the number of groups (fixing bug reported by Ottorino Pantani).
o spreadLevelPlot.lm() now includes an optional smoother in addition to the fitted straight line (suggestion of Michael Friendly).
o No longer import methods (as opposed to generics) directly from pbkrtest.
o Added axis.ticks argument to scatter3d() (code contributed by David Winsemius).
Changes to Version 2.1-0
o New power family called skewPower has been added that can be used with the Box Cox method with a few negative responses (joint work with Doug Hawkins). Several functions modified to accomodate two-parameter power families.
o Fixed bug in Anova() for coxph models with clusters (reported by Jesus Humberto Gomez ), due apparently to a change in coxph().
Changes to Version 2.0-26
o Anova() F-tests for binomial and Poisson GLMs now changes error.estimate="dispersion" to "pearson" as advertized (bug reported by Will Petry).
o Improved behavior of above-plot legends in scatterplot().
o Fixed sp() (bug reported by Cesar Rabak).
o Conforms to new CRAN requirements for package imports.
Changes to Version 2.0-25
o Fixed df check in linearHypothesis.default() (bug report by Pierre Chausse).
o Fixed bug when vcov. argument to Anova() is a function (reported by Liviu Andronic).
o Now export .carEnv to avoid problem with update() in Boot() (reported by Alan T. Arnholt).
Changes to Version 2.0-24
o Fixed broken URLs.
o Changed handling of .carEnv environment.
o Moved pbkrtest, quantreg, and mgcv from Suggests: to Imports:.
Changes to Version 2.0-23
o Modified ScatterplotSmoothers to add an 'offset' to the vertical axis of spread smooths. This is required in the marginal model plot functions.
o Fixed labels on mcPlot with overlay=FALSE
o Check for 0 residual df and 0 residual deviance (within rounding) in Anova() and linearHypothesis() (problem reported by Jonathan Love).
o Fixed model.matrix.lme and model.matrix.gls utility functions, and hence Anova and vif, respectively, to work with models specified with formulas supplied as objects (after problem noted by Gang Chen).
o Added Wong data set, used in mixed-models appendix.
Changes to Version 2.0-22
o corrected bug in 'terms' argument in residualPlots, and other graphic functions with a 'terms' argument
o added residual curvature tests for glm.nb
o mcPlot and mcPlots draw 'marginal/conditional' plots for lm objects. The marginal plot is of the centered response versus a centered regressor; the conditional plot is the corresponding added-variable plot. The plots can be overlaid or viewed side-by-side.
o added argument marginal.scale to avPlots to scale the added-variable plot for Y on X|Z using the scale from the marginal plot of Y vs X ignoring X. The default is FALSE, corresponding to using scaling to maximize resolution or use xlim and ylim to set user scaling.
o Fixed bugs in Anova.survreg() that could affect types II, II tests, both Wald and LR, and one similar bug in linearHypothesis.survreg().
o Replaced calls to require() with requireNamespace() where possible (suggestion of Brian Ripley).
o The following functions now produce warnings rather than errors when there are empty groups: scatterplot(), scatterplotMatrix(), scatter3d(), densityPlot().
o Corrected name of "Blackmoor" dataset to "Blackmore".
o Added KosteckiDillon migraines dataset (contributed by Georges Monette).
o introduced linearHypothesis.rlm() for rlm models (suggestion of Matthieu Stigler).
o Small bug fixes/improvements.
Changes to Version 2.0-21
o residualPlot error when using 'type="rstudent" has been fixed.
o Minor change to "recode" documentation; improved error checking in recode().
o Fixed a bug in gamLine with non-canonical links. (Thanks to Hani Christoph)
o Added has.intercept.multinom() to make Anova() work with multinom objects fit to a dichotomous response (after bug report by Kristian Hovde Liland).
o Replaced vif.lm() with vif.default() to cover wider variety of models (after question by Laura Rigg about gls models).
o Diagonal panels in scatterplotMatrix() (except for histograms) show groups separately when plotted by groups (suggestion by Erich Neuwirth).
o Added vcov. argument to Anova.lm().
Changes to Version 2.0-20
o Added new id.method="r" to showLabels for labeling plots of residuals; default id.method changed in residualPlots.
o Fixed handling of labels argument to outlierTest() (bug report by Stephane Laurent).
o Accommodate numeric variables consisting entirely of NAs in recode() (suggestion of Karl Ove Hufthammer).
o Prevent dataEllipse() from opening a graphics device when draw=FALSE (fixing bug reported by Rafael Laboissiere).
o The functions makeHypothesis() and printHypothesis(), intended for internal use, are exported so that they can be used in other packages (request of Arne Henningsen).
o Small fixes.
Changes to Version 2.0-19
o allow a grouping variable for color, symbol and fits in residualPlots
o fixed axis labelling probelm in influenceIndexPlot
o fixed scoping problems in Boot, bootCase, and ncvTest
o added an argument to deltaMethod for passing arguments to get scoping right when calling linearHypothesis in another function; other deltaMethod bugs fixed
o slight modification to documentation of Boot
o summary() method for "Anova.mlm" objects now returns an object, printed by a corresponding print() method (adapting code contributed by Gabriel Baud-Bovy).
o added .merMod methods to Anova(), deltaMethod(), linearHypothesis(), matchCoefs(), and unexported utilities df.residual() and has.intercept(); insured compatibility with nlme and CRAN and developments versions of lme4.
o added use argument to scatterplotMatrix() (suggestion of Antoine Lizee).
o export linearHypothesis.default() for use in other packages (suggestion of Achim Zeileis).
o small changes and fixes.
Upstream changes:
5.30
1. Removed Y argument in crq GRAD subroutine, which seems to be superflous.
5.31
1. Added bag of little bootstraps option to summary.rq. Needs further
testing.
5.32
1. Modified the BLB code to use boot.rq.wxy so that the inner loop was all
in fortran, would be nicer if this loop were done with "fn" rather than "br".
See the note in boot.rq above boot.rq.spwy.
2. modified the crq.pdf file to fix a mento in the description of the Peng
Huang algorithm.
5.33
1. Added option to return density estimates from predict.rqs
2. modified rq.fit.fnb to include a rhs input argument.
3. modified boot.crq to properly deal with only one tau requests
and also changed the default for printing progress report to n - 100,000.
Both suggested by Steve Portnoy.
4. modified boot.rq so it returns cov(B$B) not cov(B) as reported
by Marco Geraci
5. Fixed bug in anova.rqlist to correct error when "fn" method was used
and no $y component was returned. Reported by Tom LaBone.
6. Fixed bug in summary.rqss -- control parameters weren't getting
passed to chol call properly. (Reparted by Geoffrey Shideler (NOAA).)
7. Added init.c to register .Fortran calls and removed the package =
"quantreg" argument.
5.34
1. Fix a bug in rqss to allow control parameters to be passed to rqss.fit
when the method is "lasso" (pointed out by Heracles Apergis.)
2. changed nrow(R) to NROW(R) in rq.fit.hogg thanks to Paul Newell for bug
report.
3. fixed axis label typo in demo engel2.
4. Added Panel.R demo to illustrate fixed effect panel estimation, a la
Galvao job market talk.
5. Some changes to crq.fit.por as suggested by SLP:
line 1: add an input variable mw (the error messages suggest changing mw if
there are problems with resolving degeneracies or trying to pivot too far,
and so it should be possible to do this without getting into the deep part of
the code)
lines 3 and 5: test that x is a matrix and add column names if they are
missing
line 39: define mw so that the fortran constraint is satisfied
Upstream changes:
The version 1.71
1. Fixed the REAL*8 and INTEGER*4 occurences in accordance with Kurt's email.
The version 1.73
1. changed occurences of unix.time to system.time in accordance with Kurt's
directive.
The version 1.74
1. One more unix -> system
The version 1.75
1. package -> PACKAGE [per Kurt's email of 3/2/17]
The version 1.76
1. Used package_native_routine_registration_skeleton to remove
PACKAGE = SparseM [per Kurt's email of 3/2/17]
The version 1.77
1. Changed setMethod for diag (matrix.csr) in accordance with MM's suggestion
2. removed setGeneric for image also suggested by MM.
