* Worked around apparent glibc bug that leads to rare hangs when freeing
semaphores.
* Fixed segfault due to unaligned access in certain obscure problems
that use SSE and multiple threads.
* MPI transforms not included, as they are still in alpha; the alpha
versions of the MPI transforms have been moved to FFTW 3.3alpha1.
* Performance improvements for sizes with factors of 5 and 10.
* Documented FFTW_WISDOM_ONLY flag, at the suggestion of Mario
Emmenlauer and Phil Dumont.
* Port Cell code to SDK2.1 (libspe2), as opposed to the old libspe1 code.
* Performance improvements in Cell code for N < 32k, thanks to Jan Wagner
for the suggestions.
* Cycle counter for Sun x86_64 compiler, and compilation fix in cycle
counter for AIX/xlc (thanks to Jeff Haferman for the bug report).
* Fixed incorrect type prefix in MPI code that prevented wisdom routines
from working in single precision (thanks to Eric A. Borisch for the report).
* Added 'make check' for MPI code (which still fails in a couple corner
cases, but should be much better than in alpha2).
* Many other small fixes.
Upstream changes:
2.25 September 9 - Minor
+ Fix for set_properties() bug due to 5.10/5.8 UTF-8 differences.
+ Fix for failing tests due to localtime() issues.
2.24 September 6 - Minor
+ Added set_properties() method to set document properties.
Added test suite and example.
Pkgsrc changes:
o Update to use Module::Build
o Adjust MASTER_SITES, dist not present in common directory
(reported upstream)
Upstream changes:
0.41 24 October 2008
+ Changed maintainership to John McNamara.
! Fixed bug when parsing RK numbers (generally ints or small floats).
http://rt.cpan.org/Public/Bug/Display.html?id=39892
! Changed margin units to inches to (cleanly) avoid undef warning in
SaveParser.
0.33 2008.09.07
- Default format for formatted dates changed from 'm-d-yy' to 'yyyy-mm-dd'
- Numeric fields with date-formats now promote to Date
- Added docs about date type 14 problem
- skip another test when prereq is missing
- split Spreadsheet::ParseExcel::SaveParser into packages
- split Spreadsheet::ParseExcel into packages
Pkgsrc changes:
o Add a patch to make ExtUtils::MakeMaker emit use of the gmp
library. Actual use will be handled by bulidlink / wrapper.
o Added commented-out extra modules which can be optionally
used during "make test" if various TEST_* environment variables
are set.
Upstream changes:
2.05 2008-10-06 Greg
- New maintainer: Greg Sabino Mullane
- Allow tests to work on 64-bit platforms. Patch from Flo.
(CPAN bugs #5960, #30327, #27641, #12751, #15459)
- Add support for probab_prime function. Patch by shlomif@iglu.org.il.
(CPAN bug #6184)
- Get smarter about detecting lack of GMP libraries.
(CPAN bug #18709)
- Add META.yml and some more tests.
* New API routines
* A crude implementation of CPLEX-like interface to GLPK API was
added to the package. Currently it allows using GLPK as a core
LP solver for Concorde, a well known computer code for solving
the symmetric TSP.
* Some bugs were fixed in the SQL table driver.
BaseCnv provides a few simple functions for converting between
arbitrary number bases. It is as fast as I currently know how to
make it (of course relying only on the lovely Perl). If you would
rather utilize an object syntax for number-base conversion, please
see Ken Williams's <Ken@Forum.Swarthmore.Edu> fine Math::BaseCalc
module.
Overview of changes in gcalctool 5.24.1
* Fixed GtkSpinButton warning (Robin Sonefors, Bug #553965)
* Only update bit panel when display contains a solved number (Bug #548690).
* gcalctool/gtk.c: Remove inline declaration so can compile in C89 (Jens Granseuer, Bug #553307).
* Updated translations: ar (Anas Afif Emad), bg (Alexander Shopov), pt_BR (Vladimir Melo).
Overview of changes in gcalctool 5.24.0
* Updated translations: af (Friedel Wolff), ar (Anas Afif Emad, Khaled Hosny),
bn_IN (Sankarshan Mukhopadhyay), da (Kenneth Nielsen),
dz (Pema Geyleg), gu (Sweta Kothari),
hr (Robert Sedak), hu (Gabor Kelemen),
it (Luca Ferretti), kn (Shankar Prasad),
ko (Changwoo Ryu), lt (Gintautas Miliauskas),
ml (Sreejith K incorporated, Praveen Arimbrathodiyil),
mr (Sandeep Shedmake), ro (Mişu Moldovan),
sq (Laurent Dhima), ta (Tirumurthi Vasudevan),
te (Krishnababu K), tr (Baris Cicek),
zh_CN (Funda Wang)
* Updated help: es (Jorge Gonzalez)
----
Overview of changes in gcalctool 5.23.92
* Updated translations: en_GB (Philip Withnall), ca (Gil Forcada),
bg (Alexander Shopov)
----
Overview of changes in gcalctool 5.23.91
* Fix packing for modulus button (Bug #548880)
* Change from OnlyShowIn=GNOME;XFCE; to NotShowIn=KDE; so
other desktops can use GCalctool (bug #518862).
----
Overview of changes in gcalctool 5.23.90
* Fix some small memory leaks (Felix Riemann, Bug #547942)
* More work tidying up MP code (Klaus Niederkrueger, Robert Ancell, Bug #524091)
* Updated translations: ar (Khaled Hosny), fi (Ilkka Tuohela), he (Yair Hershkovitz), ja (Takeshi Aihana), pt (Duarte Loreto), sk (Marcel Telka)
* Updated documentation: ru (Yuriy Penkin)
----
Overview of changes in gcalctool 5.23.6
* Deprecated left-to-right mode (Bug #500994).
* Updated remaining documentation (bg, zh_CN, zh_HK, zh_TW) to gnome-doc-utils (Robert Ancell, Bug #336104)
* Changed icon from deprecated 'gnome-calculator' to 'accessories-calculator') (Matthias Clasen, Bug #545074)
* Updated translations: ar (Djihed Afifi), fr (Claude Paroz), pt_BG (Fabrício Godoy)
----
Overview of changes in gcalctool 5.23.5
* Fix regression in factorial operation (Klaus Niederkrueger)
* Made trigonometric button text translatable (Yuri Penkin, Bug #540196)
* More work tidying up MP code (Klaus Niederkrueger, Robert Ancell, Bug #524091)
* Updated Japanese documentation to gnome-doc-utils (Claude Paroz, Takeshi Aihana, Bug #336104)
* Updated translations: ca (Joan Duran), oc (Yannig Marchegay), ru (Yuriy Penkin), sv (Daniel Nylander), th (Theppitak Karoonboonyanan)
----
Overview of changes in gcalctool 5.23.4
* Added workaround to stop display disappearing when editing large displays (Bug #524602)
* Applied second mp math tidy up patch from Klaus Niederkrueger (Bug #524091)
* Updated translations: ar (Djihed Afifi)
----
Overview of changes in gcalctool 5.23.3
* Default to no thousands separator not ',' for locales that do not require one (Bug #527669)
* Updated translations: ar (Djihed Afifi), et (Ivar Smolin), vi (Clytie Siddall)
----
Overview of changes in gcalctool 5.23.2
* Fixes the cursor from moving around when editing numbers with thousands separators (Bug #527669)
* Structural changes in preperation for full unicode support (Bug #530532)
* Updated translations: es (Jorge González), gl (Ignacio Casal Quinteiro), nb (Kjartan Maraas),
nl (Tino Meinen), pt_BR (Leonardo Ferreira Fontenelle), sl (Matej Urbančič)
----
Overview of changes in gcalctool 5.23.1
* Fixes a number of compiler warnings (Bugs #526976, #526702, #527318)
* Fixes incorrect negation precedence (Bug #526094)
* Fixes issues with thousands seperators and radix in non-english
locales (Bug #527669)
* Fixes regression in constant and function menus (Bug #527545)
* Fixes problem where display is invisible after solving equation
(Bug #524602)
This module is an extension of the Excel::Template module, which
allows the user to use various "engines" from which you can create
Excel files through Excel::Template.
This is a module used for templating Excel files. Its genesis came
from the need to use the same datastructure as HTML::Template, but
provide Excel files instead. The existing modules don't do the
trick, as they require replication of logic that's already been
done within HTML::Template.
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0.
The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=...").
A package that provides classes and methods for spatial data. The classes document
where the spatial location information resides, for 2D or 3D data. Utility functions
are provided, e.g. for plotting data as maps, spatial selection, as well as methods
for retrieving coordinates, for subsetting, print, summary, etc.
genetics 1.3.4 - 2008-08-20
---------------------------
- Fix bug in makeGenotypes that caused it to ignore the 'sep' argument
when determining which columns contain genotypes & add a corresponing
regression test
genetics 1.3.3 - 2007-04-29
---------------------------
- Correct 'obsolete' use of '$'. R no longer permits '$' to be used
to extract named elements from vectors (just lists).
- Remove the power.casectl() function, which was based on invalid
assumpations. It has been marked depreciated. Please use the
functions in the Bioconductor package 'GeneticsDesign' instead.
genetics 1.3.2 - 2007-11-20
---------------------------
- Fix bug in handling of assignment of NA value(s) to elements of an
existing genotype object.
- Fix warning messages from R CMD CHECK
- Correct documentation error by swapping definitions of kp and alpha
arguments of power.casectl().
genetics 1.3.1
--------------
- fixes in genotypeOrder to ensure all genotype/haplotype combinations
are used.
- genotypeOrder<- is now exported
genetics 1.3.0
--------------
- A note is now displayed on startup:
The R-Genetics project has developed an set of enhanced genetics
packages that will shortly replace 'genetics'. Please visit the
project homepage at http://rgenetics.org for more information.
- binsearch() has been moved to the gtools package
- New function groupGenotype to create groups/levels based on genotype
names
- Added some internal utility functions
(.genotype2Haplotype, .genotype2Allele, and .matchGenotype)
- Genotype class gets additional slot genotypeOrder (and genotype()
function gets additional argument with the same name) in order to enable
predefined order of genotypes in other functions e.g. summary
- Added order, sort and %in% methods for genotype and haplotype classes.
- Fixed genotype() with allow.partial.missing=FALSE when 'alleles' argument
is passed
- There is no more warning in genotype() if 'a1' or 'a2' have NA value(s)
and 'alleles'' argument is specified, since NA is NA anyway
- Fixed documentation of power.casectrl()
- added gtools to Depends as needed by expectedGenotypes(); the latter now
gives sorted genotypes according to order of given alleles
- print.HWE.test() wasn't displaying the observed vs expected genotype
frequency table. Fixed.
genetics 1.2.1
--------------
- Update Greg's email address
- Fixed a bug in function allele.number, as pointed out by Chris
Wallace
CHANGES IN 2.4.2 (2008-05-11)
-----------------------------
- Enhancements and bug fixes for read.xls() and xls2csv():
- More informative log messages when verbose=TRUE
- File paths containing spaces or other non-traditional characters
are now properly handled
- Better error messages, particularly when perl fails to generate
an output .csv file.
- The 'shortcut' character "~" (meaning user's home directory) is
now properly handled in file paths.
- XLS files created by OpenOffice are now properly handled. Thanks to
Robert Burns for pointing out the patch
(http://rt.cpan.org/Public/Bug/Display.html?id=7206)
CHANGES IN 2.4.1 (2008-03-24)
-----------------------------
- Update perl libraries needed by xls2csv() and read.xls()
to latest available versions on CRAN.
- Add read.xls() to exported function list
- Correct iris.xls example file. It didn't contain the complete
& properly formatted iris data set. Fixed.
- Fix typo in win32 example for read.xls()
CHANGES IN 2.4.0 (2008-01-30)
-----------------------------
- The keep() function now includes an 'all' argument to specify how
objects with names starting with '.' are handled.
- keep() now shows an informative warning message when a requested
object does not exist
- New vignette "Mapping Levels of a Factor" describing the use of
mapLevels().
- New vignette "Working with Unknown Values" describing the use of
isUnknown() and unknownToNA().
- Several enhancements to read.xls() (thanks to Gabor Grothendieck):
- New function xls2csv(), which handles converting an xls file
to a csv file and returns a connection to the
temporary csv file
- xls2csv() and read.xls() both allow a file or a url to be specified
- read.xls() has a new 'pattern' argument which, if supplied,
will ignore everything prior to the first line in th csv file
that matches the pattern. This is typically used if there
are a variable number of comment lines prior to the header
in which case one can specify one of the column
headings as the pattern. read.xls should
be compatible with the old read.xls.
- Minor fixes to drop.levels(), is.what().
- Implementation of unit tests for most functions.
CHANGES IN 2.3.1 (2006-10-29)
-----------------------------
- Arguments as well as their position of reorder.factor have been changed
to conform with reorder.factor method in stats package, due to collision
bug. Argument 'make.ordered' is now 'order' and old argument 'order' is
now 'new.order'! Therefore, you have to implicitly specify new.order i.e.
reorder(trt, new.order=c("PLACEBO", "300 MG", "600 MG", "1200 MG"))
- trim() gains ... argument.
- Added "unknown" methods for matrices.
- Added c() method for factors based on mapLevels() functions.
- Added write.fwf, which writes file in *F*ixed *W*idth *F*ormat.
CHANGES FROM 2.1.X to 2.3.0 (2006-09-19)
---------------------------------------
- Added mapLevels(), which produces a map with information on levels and/or
internal integer codes. Contributed by Gregor Gorjanc.
- Extended dropLevels() to work on the factors contained in a data
frame, as well as individual factors.
- Add unknown(), which changes given unknown value to NA and vice
versa. Contributed by Gregor Gorjanc.
- Extended trim() to handle a variety of data types data.frames,
lists, factors, etc. Code changes contributed by Gregor Gorjanc.
- Added resample() command that acts like sample() except that it
_always_ samples from the arguments provided, even if only a single
argument is present. This differs from sample() which behaves
differently in this case.
- Updated my email address.
gtools 2.5.0
------------
New features:
- Add checkRVersion() function to determin if a newer version of R is
available.
- Deprecated assert() in favor of base::stopifnot
Bug fixes:
- Fix bug in binsearch() identified by 2.6.0 R CMD CHECK
Other changes:
- Improve text explanation of how defmacro() and strmacro() differ from
function().
- Update definitions of odd() and even() to use modulus operator
instead of division.
gtools 2.4.0
------------
- Add binsearch() function, previously in the genetics() package.
gtools 2.3.1
------------
- Add ask() function to prompt the user and collect a single response.
gtools 2.3.0
------------
- Update email address for Greg
- Add new 'smartbind' function, which combines data frames
efficiently, even if they have different column names.
Changes in pixmap version 0.4-9
o Fixed a minor glitch in write.pnm.
Changes in pixmap version 0.4-8
o Fixed a bug that prevented plotting images with only 1 row (bug
report by Robert Esswein).
Changes in pixmap version 0.4-7
o Use LazyLoad instead of SaveImage.
Changes in pixmap version 0.4-6
o Modified one of the regression tests for changes in R 2.4:
terrain.colors() now return transparency information
-> do not use it in example.
Changes in pixmap version 0.4-5
o standardized license filed in DESCRIPTION file.
2007-12-24 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-26.
* R/date.R (summary.date): Add ... so that na.rm can be used,
Suggested by Steven McKinney <smckinney@bccrc.ca>.
2007-07-12 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-25.
(License): Clarify.
2007-02-01 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* inst/CITATION: Get date/year and version from the package
metadata.
2006-12-19 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-23.
* R/date.R (as.character.date): Add missing ... argument.
2006-09-29 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-22.
* R/date.R: Fix invalid escapes.
2006-09-09 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-21.
(Depends): Added.
2006-08-05 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-20.
* man/as.date.Rd: Fix inconsistency spotted by Antony Unwin
<unwin@math.uni-augsburg.de>.
2006-06-26 Kurt Hornik <Kurt.Hornik@wu-wien.ac.at>
* DESCRIPTION (Version): New version is 1.2-19.
* inst/CITATION: New file.
# 2008-05-23 - Version 1.59
- Corrected call of unexported function from
Sweave.R (utils package) in RweaveHTMLWritedoc.
- Corrected explicit call of S3Method print from
package xtable.
- Corrected explicit call of S3Method from package
nnet.
- Corrected explicit call of isInitialized from
nlme package.
- Corrected explicit call of volume from
cluster package.
- Corrected explicit calls of imp.moments
from boot package.
- Corrected explicit calls of splineOrder and
splineKnots from splines package.
- Corrected explicit call of date.ddmmmyy from
survival package.
- Fixed rpart HTML S3 method to include tree.depth
function defined internally, as rpart package is not
exporting it anymore.
- Fixed .HTML.file warning of no visible bindings
in almost every function of the package.
- Fixed bug in HTML.data.frame outputing invalid
code (missing opening <tr>) when row.names was
set to FALSE. As patch submited by Michael Irskens and
also reported by Rik Schoemaker.
- Fixed bug in HTML.matrix, opening of <tbody>
wasn't being carried. Pending the fixing of
excess of </tr>'s.
- Fixed miscelaneous bugs in CSS files.
# 2006-09-28 - Version 1.58
- Fixed bug in HTMLcore.R (unintended \ interpolation)
- Fixed bug in HTMLfi() call inside HTML.summary.lm,
which made R CMD check fail on Windows.
- Uniformization of capitalization of HTML tags
(to lowercase), in conformity with the
XHTML 1.0 standard.
- Updated HTML.data.frame to include row.names
option, as contributed by Tobias Verbeke on
2006-05-27.
# 2006-07-04 - Version 1.57
- Added the HTML2clip wrapper, suggested by Gabor
Gronthendieck.
- Miscelaneous fixes to documentation (contributed
by Tobias Verbeke)
- Cleaning up of man directory of spurious files as
suggested by Kurt Honik
