Commit graph

4 commits

Author SHA1 Message Date
bacon
0f55c4012d biology/kallisto: Update to 0.48.0
Long awaited bug fix release
Also unbundled htslib
Changes: https://github.com/pachterlab/kallisto/tags
2022-02-27 01:57:27 +00:00
bacon
119b451cf2 biology/kallisto: Upgrade to 0.46.1
Minor enhancements since 0.45
0.46.2 is available, but has serious regressions.
Reverted to bundled htslib 1.4.1, since kallisto source contains modified
htslib files that are incompatible with the current 1.10.2 package.
2020-07-23 19:22:00 +00:00
bacon
b0cd4ffec8 biology/kallisto: Switch from archivers/szip to archivers/libaec
libaec is a BSD-licensed drop-in replacement for the non-redistributable szip
2019-05-01 12:38:54 +00:00
bacon
4b7c925a95 biology/kallisto: import kallisto-0.45.0
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.
2018-12-21 19:00:56 +00:00